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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954506
Clone id TST39A01NGRL0020_J23
Library
Length 621
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_J23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGAAGCCCCACTAAGCTCTCTGGTTTCCAGGGCACCTTCCTTGTCGGTTGCTCCTCAGCA
TCTCTACTCACAAGGAGATCGCTCAATTACTTGCACAATCACAGAAAGGCCTCTGCTCTC
TGCATCAGGAGCGACAGCAATGGAAGTGCTGATGAGAAGCCACCTTTTGGGTACACAAGA
AAGGACGTCCTTCTGATTGGTCTTGGATTAACCCTTACTGGAGTGGGCCTTAAGTATGGG
CTTGAGTTTGCCGGACTTGATCCTCTCAAAGCCGGCAATGTGGTGCAGCTAGTCATGGTT
CTTGGTCTCACTGTCGGGTGGATTTCCACTTACTTATTTAGGGTCTCTACAAAAGATATG
ACATATGCCAAGCAGTTAAGGGACTACGAGAACAAAGTCATACAGAAACGGTTGGAAGAG
CTACCTGAAGCGGAGTTGGAGTCTTTGCTGGCCCAAGTTGAAGAGGAAAAGCAGCAACTA
AAAGCAAGACGAGCGAAAATGTCTAAACCTGAATAGAGATGTGAATAACTGGGCAATTTT
CATGTATGATATCCCCGTCACTTTGAAAGTGATGGGGGCCGTTTATGGTCGAAGTATAAA
AGGCTTACCTTTTGTCCTCCT
■■Homology search results ■■ -
sp_hit_id O57415
Definition sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1 OS=Gallus gallus
Align length 69
Score (bit) 31.2
E-value 4.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954506|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J23, 5'
         (621 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1 O...    31   4.5  
sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra ...    31   5.9  
sp|P70063|T7L1C_XENLA Transcription factor 7-like 1-C OS=Xenopus...    30   7.7  
sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein ...    30   7.7  
sp|Q0ULD0|NACB_PHANO Nascent polypeptide-associated complex subu...    30   7.7  

>sp|O57415|RREB1_CHICK RAS-responsive element-binding protein 1
           OS=Gallus gallus GN=RREB1 PE=2 SV=2
          Length = 1615

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -2

Query: 317 PTVRPRTMTSCTTLPAL---RGSSPANSSPYLRPTPVRVNPRPIRRTSFLVYPKGGFSSA 147
           P V PRT+ + +T P L   + +SP   SP L P P+R+    +  +S     + G  S+
Sbjct: 493 PLVTPRTVVATSTPPPLISAQQASPGCISPSLPPPPLRLIKNSVETSSNSHLSQPGAKSS 552

Query: 146 LPLLSLLMQ 120
            P   LL+Q
Sbjct: 553 -PSSQLLLQ 560


>sp|Q1XDL3|YCF36_PORYE Uncharacterized protein ycf36 OS=Porphyra
           yezoensis GN=ycf36 PE=3 SV=1
          Length = 165

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +2

Query: 425 LKRSWSLCWPKLKRKSSN*K 484
           LK SW  CWP L R+S N K
Sbjct: 23  LKNSWFFCWPTLSRRSYNKK 42


>sp|P70063|T7L1C_XENLA Transcription factor 7-like 1-C OS=Xenopus
           laevis GN=tcf7l1-C PE=2 SV=1
          Length = 550

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = -2

Query: 314 TVRPRTMTSCTTLPALRGSSPANSSPYLR-PTPVRVN--PRPIRRTSFLVYPKGGFSSAL 144
           T +P       +   L   SP++SS     P+PV  +   RPI  TS ++ P G F SAL
Sbjct: 472 TTKPEARALSHSAAFLASKSPSSSSLSGHLPSPVGASLLSRPIPLTSSILSPPGVFPSAL 531

Query: 143 PLLSLL 126
             L LL
Sbjct: 532 QALPLL 537


>sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein 1
           OS=Homo sapiens GN=SRRM1 PE=1 SV=2
          Length = 904

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 317 PTVRPRT-MTSCTTLPALRGSSPANSSPYLRPTPVRVNPRPIRRTSFLVYPKGGFSSALP 141
           P+ RPR   TS +  P  RG   A+SSP  R +P   + RPIRR S    PK    +A P
Sbjct: 684 PSPRPRAPQTSSSPPPVRRG---ASSSPQRRQSP-SPSTRPIRRVSRTPEPKKIKKAASP 739


>sp|Q0ULD0|NACB_PHANO Nascent polypeptide-associated complex subunit
           beta OS=Phaeosphaeria nodorum GN=EGD1 PE=3 SV=1
          Length = 160

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -3

Query: 568 FQSDGDIIHENCPVIHISIQV*TFSL--------VLLLVAAFPLQLGP 449
           F+SDG++IH + P +H S+   TF++        +  LV     QLGP
Sbjct: 60  FKSDGNVIHFSAPKVHASVPSNTFAIYGNGEDKELTELVPGILNQLGP 107
tr_hit_id A9NRG2
Definition tr|A9NRG2|A9NRG2_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 143
Score (bit) 126.0
E-value 9.0e-28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954506|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_J23, 5'
         (621 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NRG2|A9NRG2_PICSI Putative uncharacterized protein OS=Picea...   126   9e-28
tr|A9P076|A9P076_PICSI Putative uncharacterized protein OS=Picea...   126   1e-27
tr|Q8LR94|Q8LR94_ORYSJ Putative uncharacterized protein P0034E02...   121   3e-26
tr|A2WW44|A2WW44_ORYSI Putative uncharacterized protein OS=Oryza...   121   3e-26
tr|A9PID9|A9PID9_POPTR Putative uncharacterized protein OS=Popul...   120   5e-26
tr|A9RRC6|A9RRC6_PHYPA Predicted protein (Fragment) OS=Physcomit...   120   9e-26
tr|A7PH99|A7PH99_VITVI Chromosome chr17 scaffold_16, whole genom...   118   3e-25
tr|B6U2R8|B6U2R8_MAIZE Putative uncharacterized protein OS=Zea m...   117   6e-25
tr|B4FKC6|B4FKC6_MAIZE Putative uncharacterized protein OS=Zea m...   117   6e-25
tr|Q9LVH7|Q9LVH7_ARATH Dbj|BAA18124.1 OS=Arabidopsis thaliana PE...   112   2e-23
tr|Q94BY7|Q94BY7_ARATH AT3g17930/MEB5_15 OS=Arabidopsis thaliana...   112   2e-23
tr|Q8LDI7|Q8LDI7_ARATH Putative uncharacterized protein OS=Arabi...   112   2e-23
tr|A8JD41|A8JD41_CHLRE Predicted protein OS=Chlamydomonas reinha...    88   5e-16
tr|A4S6K2|A4S6K2_OSTLU Predicted protein OS=Ostreococcus lucimar...    87   1e-15
tr|Q00X05|Q00X05_OSTTA Homology to unknown gene OS=Ostreococcus ...    78   4e-13
tr|B7FZY4|B7FZY4_PHATR Predicted protein OS=Phaeodactylum tricor...    71   6e-11
tr|Q10W94|Q10W94_TRIEI Putative uncharacterized protein OS=Trich...    68   5e-10
tr|B4AV48|B4AV48_9CHRO Putative uncharacterized protein OS=Cyano...    65   2e-09
tr|B5W020|B5W020_SPIMA Putative uncharacterized protein OS=Arthr...    65   4e-09
tr|B4VXS2|B4VXS2_9CYAN Putative uncharacterized protein OS=Micro...    64   9e-09
tr|B1WNQ0|B1WNQ0_CYAA5 Putative uncharacterized protein OS=Cyano...    62   2e-08
tr|B7KCY5|B7KCY5_9CHRO Putative uncharacterized protein OS=Cyano...    62   3e-08
tr|B0JWY6|B0JWY6_MICAN Putative uncharacterized protein OS=Micro...    61   5e-08
tr|A8YEH1|A8YEH1_MICAE Similar to A0YVR4_9CYAN Hypothetical prot...    61   5e-08
tr|Q4BVD6|Q4BVD6_CROWT Putative uncharacterized protein OS=Croco...    61   6e-08
tr|A3ISK8|A3ISK8_9CHRO Putative uncharacterized protein OS=Cyano...    59   3e-07
tr|A0YVR4|A0YVR4_9CYAN Putative uncharacterized protein OS=Lyngb...    58   5e-07
tr|Q8DKZ2|Q8DKZ2_THEEB Tlr0707 protein OS=Thermosynechococcus el...    57   7e-07
tr|Q8YMW4|Q8YMW4_ANASP Alr4810 protein OS=Anabaena sp. (strain P...    57   9e-07
tr|Q5N325|Q5N325_SYNP6 Putative uncharacterized protein OS=Synec...    57   9e-07

>tr|A9NRG2|A9NRG2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 196

 Score =  126 bits (317), Expect = 9e-28
 Identities = 75/143 (52%), Positives = 87/143 (60%)
 Frame = +1

Query: 55  SASLLTRRSLNYLHNHRKASALCIRSDSNGSADEKPPFGYTRKDXXXXXXXXXXXXXXXX 234
           ++ L + +SL  L   R  SA      +  SA  K PFGYTRKD                
Sbjct: 48  NSGLPSSKSLKKL---RLFSAQTEADTTTTSAQGKIPFGYTRKDVLLIGLGLTGFGFGLK 104

Query: 235 XXXEFAGLDPLKAGNVVQLVMVLGLTVGWISTYLFRVSTKDMTYAKQLRDYENKVIQKRX 414
              EF GLD  KAGNVVQLVMVLGLTVGWIS+Y+FRVS+KDMTYA+QLRDYENKV+QKR 
Sbjct: 105 YGLEFIGLDSTKAGNVVQLVMVLGLTVGWISSYIFRVSSKDMTYAQQLRDYENKVMQKRL 164

Query: 415 XXXXXXXXXXXXAQVEEEKQQLK 483
                       AQVEEEKQ+L+
Sbjct: 165 EELPEAELEVLLAQVEEEKQRLQ 187


>tr|A9P076|A9P076_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 196

 Score =  126 bits (316), Expect = 1e-27
 Identities = 68/113 (60%), Positives = 75/113 (66%)
 Frame = +1

Query: 145 SADEKPPFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLKAGNVVQLVMVLGLTVGWI 324
           SA  K PFGYTRKD                   EF GLD  KAGNVVQLVMVLGLTVGWI
Sbjct: 75  SAQGKIPFGYTRKDVLLIGLGLTGFGFGLKYGLEFIGLDSTKAGNVVQLVMVLGLTVGWI 134

Query: 325 STYLFRVSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXXAQVEEEKQQLK 483
           S+Y+FRVS+KDMTYA+QLRDYENKV+QKR             AQVEEEKQ+L+
Sbjct: 135 SSYIFRVSSKDMTYAQQLRDYENKVMQKRLEELPEAELEVLLAQVEEEKQRLQ 187


>tr|Q8LR94|Q8LR94_ORYSJ Putative uncharacterized protein P0034E02.54
           (Putative uncharacterized protein) (Os01g0805200
           protein) OS=Oryza sativa subsp. japonica GN=P0034E02.54
           PE=4 SV=1
          Length = 209

 Score =  121 bits (304), Expect = 3e-26
 Identities = 64/130 (49%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
 Frame = +1

Query: 103 RKASALCIRSDS----NGSADEKPPFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLK 270
           R+   L +RS S    N + +EK PFGYTRKD                   E  G+DPL+
Sbjct: 59  RQRRRLVVRSSSSDETNSTTEEKTPFGYTRKDVLLIGVGVTLLGYGLKYGLELVGVDPLQ 118

Query: 271 AGNVVQLVMVLGLTVGWISTYLFRVSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXX 450
           AGN VQL++VLG+TVGWISTY+FRV+ KDMTYA+QLRDYE +V++KR             
Sbjct: 119 AGNAVQLIIVLGMTVGWISTYMFRVANKDMTYAQQLRDYEKQVMEKRLESLTEAELQVLL 178

Query: 451 AQVEEEKQQL 480
            QVEEEKQ+L
Sbjct: 179 EQVEEEKQRL 188


>tr|A2WW44|A2WW44_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04123 PE=4 SV=1
          Length = 209

 Score =  121 bits (304), Expect = 3e-26
 Identities = 64/130 (49%), Positives = 80/130 (61%), Gaps = 4/130 (3%)
 Frame = +1

Query: 103 RKASALCIRSDS----NGSADEKPPFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLK 270
           R+   L +RS S    N + +EK PFGYTRKD                   E  G+DPL+
Sbjct: 59  RQRRRLVVRSSSSDETNSTTEEKTPFGYTRKDVLLIGVGVTLLGYGLKYGLELVGVDPLQ 118

Query: 271 AGNVVQLVMVLGLTVGWISTYLFRVSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXX 450
           AGN VQL++VLG+TVGWISTY+FRV+ KDMTYA+QLRDYE +V++KR             
Sbjct: 119 AGNAVQLIIVLGMTVGWISTYMFRVANKDMTYAQQLRDYEKQVMEKRLESLTEAELQVLL 178

Query: 451 AQVEEEKQQL 480
            QVEEEKQ+L
Sbjct: 179 EQVEEEKQRL 188


>tr|A9PID9|A9PID9_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 204

 Score =  120 bits (302), Expect = 5e-26
 Identities = 63/117 (53%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
 Frame = +1

Query: 130 SDSNGSADE-KPPFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLKAGNVVQLVMVLG 306
           S  +GS+D+ K PFGY RKD                   E+AG+DPL+AGNVVQLV+VLG
Sbjct: 80  SSEDGSSDQGKTPFGYNRKDVLLIGLGVTLLGIGLESGLEYAGVDPLQAGNVVQLVLVLG 139

Query: 307 LTVGWISTYLFRVSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXXAQVEEEKQQ 477
           LTVGWISTY+FRVS K+MTYA+QLRDYENKV++KR              +VEEEK++
Sbjct: 140 LTVGWISTYIFRVSNKEMTYAQQLRDYENKVMEKRLEGLSEAELEALLERVEEEKRR 196


>tr|A9RRC6|A9RRC6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_118254 PE=4 SV=1
          Length = 116

 Score =  120 bits (300), Expect = 9e-26
 Identities = 61/112 (54%), Positives = 73/112 (65%)
 Frame = +1

Query: 163 PFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLKAGNVVQLVMVLGLTVGWISTYLFR 342
           PFGYTRKD                   EF G+DPL+AGNVVQ++MV GLT+GWIS+Y+FR
Sbjct: 1   PFGYTRKDVILIGVGLTAFGVGLKYGLEFFGVDPLRAGNVVQIIMVAGLTIGWISSYVFR 60

Query: 343 VSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXXAQVEEEKQQLKARRAK 498
           VS KDMTYAKQL+DYENKV++KR             AQVEEEK +L+  R K
Sbjct: 61  VSNKDMTYAKQLKDYENKVMEKRLEELPEAELETMLAQVEEEKIRLQQSREK 112


>tr|A7PH99|A7PH99_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017862001
           PE=4 SV=1
          Length = 127

 Score =  118 bits (295), Expect = 3e-25
 Identities = 60/106 (56%), Positives = 70/106 (66%)
 Frame = +1

Query: 163 PFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLKAGNVVQLVMVLGLTVGWISTYLFR 342
           PFGY RKD                   EF G+DPL+AGNVVQLV+VLGLT+GWISTY+FR
Sbjct: 15  PFGYNRKDVLLIGVGVTVLGIGLKSGLEFVGVDPLQAGNVVQLVLVLGLTIGWISTYIFR 74

Query: 343 VSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXXAQVEEEKQQL 480
           VS K+MTYA+QLRDYENKV+QKR              QVEEEK++L
Sbjct: 75  VSNKEMTYAQQLRDYENKVMQKRLEGLTEAELEVLLEQVEEEKRRL 120


>tr|B6U2R8|B6U2R8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 205

 Score =  117 bits (293), Expect = 6e-25
 Identities = 62/126 (49%), Positives = 77/126 (61%)
 Frame = +1

Query: 103 RKASALCIRSDSNGSADEKPPFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLKAGNV 282
           R +++     DS     EK PFGYTRKD                   E  G+DPL+AGNV
Sbjct: 65  RSSTSESSTDDSQSPKQEKAPFGYTRKDVLLIGLGVTAFGVGLKYGLELLGVDPLQAGNV 124

Query: 283 VQLVMVLGLTVGWISTYLFRVSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXXAQVE 462
           VQL++VLG+TVGWISTY+FRV+ KDMTYA QLRDYE +V++KR              QVE
Sbjct: 125 VQLLVVLGMTVGWISTYMFRVANKDMTYAHQLRDYEKQVMEKRLESLSEXELQALLEQVE 184

Query: 463 EEKQQL 480
           EEKQ++
Sbjct: 185 EEKQRV 190


>tr|B4FKC6|B4FKC6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 205

 Score =  117 bits (293), Expect = 6e-25
 Identities = 61/126 (48%), Positives = 76/126 (60%)
 Frame = +1

Query: 103 RKASALCIRSDSNGSADEKPPFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLKAGNV 282
           R +++     DS     EK PFGYTRKD                   E  G+DPL+AGNV
Sbjct: 65  RSSTSESSTDDSQSPKQEKAPFGYTRKDVLLIGLGVTAFGVGLKYGLELLGVDPLQAGNV 124

Query: 283 VQLVMVLGLTVGWISTYLFRVSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXXAQVE 462
           VQL++VLG+TVGWISTY+FRV+ KDMTYA QLRDYE +V++KR              QVE
Sbjct: 125 VQLLVVLGMTVGWISTYMFRVANKDMTYAHQLRDYEKQVMEKRLESLSEAELQALLEQVE 184

Query: 463 EEKQQL 480
           EEKQ++
Sbjct: 185 EEKQRV 190


>tr|Q9LVH7|Q9LVH7_ARATH Dbj|BAA18124.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 130

 Score =  112 bits (280), Expect = 2e-23
 Identities = 55/117 (47%), Positives = 74/117 (63%)
 Frame = +1

Query: 133 DSNGSADEKPPFGYTRKDXXXXXXXXXXXXXXXXXXXEFAGLDPLKAGNVVQLVMVLGLT 312
           D + +  +  PFGYTRKD                   E+ G+DPL+AGN VQL++VLGLT
Sbjct: 14  DDSATKTKTTPFGYTRKDVILIGVGVTALGIGLESGLEYVGVDPLQAGNAVQLILVLGLT 73

Query: 313 VGWISTYLFRVSTKDMTYAKQLRDYENKVIQKRXXXXXXXXXXXXXAQVEEEKQQLK 483
           +GWISTY+FRV  K+MTYA+QLRDYE++V+QKR             AQV+EEK +++
Sbjct: 74  LGWISTYIFRVGNKEMTYAQQLRDYESQVMQKRLESLSEAELEALMAQVDEEKTKVE 130