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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954523
Clone id TST39A01NGRL0020_K16
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_K16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTTCTTCTGTTGCTTCGTAAGCCCTCAGCTCCTAATCCGTCCCTCAGCTGCGCGCACAA
CTCTGCTGACGTACGGTTGCTCTACGGGGCTTTACCGGCCAAGGTCAAGGTGTGGGCTGC
AGCCGCAGGTGTACCAGAGGGCCCGTTCGTCTGCAATCTCATATTTTCAACAGTTTATTC
AAGGCCATTGGAAGAGTGGACAATCTGGAGACCTTCACATTCAAGATGTTGCCTTCATCT
CTTACTTGTTCTTCTCTTGCTAGTGAGAGTATGAAGCTTACTTTTGATGCAAGTTCCAAG
AAGTGGCCACCTCAACAGACAATGCTGCATAATGTGCAAAAGAAGGGTAGAACATTTTGT
ACAATGTTCAATAACGAGTCTGGCTCTGTACAATATGACCAAGGGATACCACAGCAGCCA
CGACCTCAGCAGCGTTTTCCACCACCACAATATAACCAAGGGACATCACAGCAGCCGCTG
CAGCAGCAGCCTGGGCCGCCACAATATAACCAAGGGATACAGCAGCAG
■■Homology search results ■■ -
sp_hit_id Q54ES9
Definition sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta OS=Dictyostelium discoideum
Align length 36
Score (bit) 32.7
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954523|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_K16, 5'
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta OS=Dictyos...    33   1.1  
sp|Q9FVV9|NAP5_ARATH Probable non-intrinsic ABC protein 5 OS=Ara...    32   1.9  
sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila ...    32   2.4  
sp|Q9LK64|MRP3_ARATH Multidrug resistance-associated protein 3 O...    31   3.2  
sp|Q8BGV9|ATG4D_MOUSE Cysteine protease ATG4D OS=Mus musculus GN...    30   7.2  
sp|Q9VK89|TRM1_DROME Probable N(2),N(2)-dimethylguanosine tRNA m...    30   9.2  
sp|Q9FYH1|HAC2_ARATH Histone acetyltransferase HAC2 OS=Arabidops...    30   9.2  

>sp|Q54ES9|TCPB_DICDI T-complex protein 1 subunit beta
           OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1
          Length = 532

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 335 CKRRVEHFVQCSITSLALYNMTKGYHSSHDLSSVFH 442
           CK+ V+H + C +    +YN+ + Y + H + S+ H
Sbjct: 278 CKKIVDHGINCFVNRQLVYNLPEQYFAEHGVMSIEH 313


>sp|Q9FVV9|NAP5_ARATH Probable non-intrinsic ABC protein 5
           OS=Arabidopsis thaliana GN=NAP5 PE=3 SV=1
          Length = 324

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -1

Query: 402 LVILYRARLVIEHCTKCSTLLLHIMQHCLLRWP----LLGTCIKSKLHT 268
           L IL RA L++    K +T L H M HC+ R P    +  TC K+ +++
Sbjct: 275 LCILVRATLLVTAGYKTATELFHKMHHCIFRSPMSFKIAKTCSKTCIYS 323


>sp|Q7YZH1|RNO_DROME PHD finger protein rhinoceros OS=Drosophila
           melanogaster GN=rno PE=1 SV=1
          Length = 3241

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +2

Query: 326 CIMCKRRVEHFVQCSITSL-ALYNMTKGYHSSHDLSSVFHHHNITKGHHSSRCSSSLGRH 502
           C++C++RV   +QCS+      Y++T  +    ++ ++    N   G    +  S   +H
Sbjct: 424 CVLCRKRVGSCIQCSVKPCKTAYHVTCAFQHGLEMRAIIEEGNAEDG---VKLRSYCQKH 480

Query: 503 NITKG 517
           +++KG
Sbjct: 481 SMSKG 485


>sp|Q9LK64|MRP3_ARATH Multidrug resistance-associated protein 3
            OS=Arabidopsis thaliana GN=MRP3 PE=1 SV=1
          Length = 1514

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -1

Query: 402  LVILYRARLVIEHCTKCSTLLLHIMQHCLLRWPL 301
            L IL RA L++    K +T L H M HC+ R P+
Sbjct: 1003 LCILLRATLLVTAGYKTATELFHKMHHCIFRSPM 1036


>sp|Q8BGV9|ATG4D_MOUSE Cysteine protease ATG4D OS=Mus musculus
           GN=Atg4d PE=2 SV=1
          Length = 474

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 10/46 (21%)
 Frame = -1

Query: 411 WY-PLVILYRARLVIEHCTKCSTLLLHIMQHC---------LLRWP 304
           WY P V+ +  R  +E C++ S L++++ Q C         LL WP
Sbjct: 246 WYGPSVVAHILRKAVESCSEVSRLVVYVSQDCTVYKADVARLLSWP 291


>sp|Q9VK89|TRM1_DROME Probable N(2),N(2)-dimethylguanosine tRNA
           methyltransferase OS=Drosophila melanogaster GN=CG6388
           PE=2 SV=1
          Length = 578

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = +3

Query: 18  VSPQLLIRPSAARTTLLTYGCSTGLYRPRSRCGLQPQVYQRARSSAISYFQQFIQGHWKS 197
           V+P+ +I P +    +L+  C T +Y       L P+   ++R SA+S FQ+    HW  
Sbjct: 460 VNPERMI-PGSPLAAILSKEC-TAVYEFDE---LHPEANPKSRKSALSRFQENPTPHWGP 514

Query: 198 GQSGDLHIQD 227
           G    + I D
Sbjct: 515 GTRATIMIGD 524


>sp|Q9FYH1|HAC2_ARATH Histone acetyltransferase HAC2 OS=Arabidopsis
            thaliana GN=HAC2 PE=2 SV=1
          Length = 1357

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 389  YNMTKGYHSSHDLSSVFHHHNITKGHHSSRCSSSL 493
            YN     H+ H    + HH + +  HH S+ SSSL
Sbjct: 1189 YNFHTLRHAKHSSMMILHHLHTSNKHHCSQNSSSL 1223
tr_hit_id Q6JGV5
Definition tr|Q6JGV5|Q6JGV5_9CLOS P28 OS=Strawberry pallidosis associated virus
Align length 48
Score (bit) 36.2
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954523|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0020_K16, 5'
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6JGV5|Q6JGV5_9CLOS P28 OS=Strawberry pallidosis associated v...    36   1.0  
tr|A7RFG5|A7RFG5_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   3.0  
tr|A9RHY4|A9RHY4_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.0  
tr|Q7PQ17|Q7PQ17_ANOGA AGAP005043-PA OS=Anopheles gambiae GN=AGA...    34   5.2  
tr|A7UT73|A7UT73_ANOGA AGAP005043-PB OS=Anopheles gambiae GN=AGA...    34   5.2  
tr|Q5C0N0|Q5C0N0_SCHJA SJCHGC06763 protein (Fragment) OS=Schisto...    33   6.7  
tr|Q642T9|Q642T9_XENTR Homeobox A1 OS=Xenopus tropicalis GN=hoxa...    33   8.8  

>tr|Q6JGV5|Q6JGV5_9CLOS P28 OS=Strawberry pallidosis associated
           virus PE=4 SV=1
          Length = 239

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 3/48 (6%)
 Frame = +2

Query: 386 LYNMTKGYHSSHDLSSVFHHHNITKGHHSSRCSSSLGRH---NITKGY 520
           L NM KGY    D++++FHH+NI   + S   +S++ +H   N++ GY
Sbjct: 125 LINMRKGYFDFIDVTNLFHHYNI---YDSKSLNSAVAKHIEANVSLGY 169


>tr|A7RFG5|A7RFG5_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g80159 PE=4 SV=1
          Length = 464

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 326 CIMCKRRVEHFVQCSITS-LALYNMTKGYHSSHDLSSVFHHHNITKGHHSSRCSSSLGRH 502
           C +CK +V   +QCS+ S +  +++T G+    D+ ++     +    H S CS   G  
Sbjct: 249 CYLCKEKVGACIQCSVKSCVTAFHVTCGFQEGLDMRTILDDTEVDGVRHVSYCSKH-GYK 307

Query: 503 NITKGYS 523
           N + G S
Sbjct: 308 NKSPGKS 314


>tr|A9RHY4|A9RHY4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_66466 PE=4 SV=1
          Length = 566

 Score = 34.3 bits (77), Expect = 4.0
 Identities = 19/39 (48%), Positives = 22/39 (56%)
 Frame = +2

Query: 404 GYHSSHDLSSVFHHHNITKGHHSSRCSSSLGRHNITKGY 520
           G+HSSH  SS  HHHN   GHH  R S   G H+   G+
Sbjct: 398 GHHSSHHHSSHGHHHN-KDGHHGHRSS---GYHHKEHGH 432


>tr|Q7PQ17|Q7PQ17_ANOGA AGAP005043-PA OS=Anopheles gambiae
           GN=AGAP005043 PE=4 SV=4
          Length = 902

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 401 KGYHSSHDLSSVFHHHNITKGHHSS 475
           KGYH SHDL  V   HN+ K H  S
Sbjct: 143 KGYHCSHDLKYVLFKHNVKKHHRLS 167


>tr|A7UT73|A7UT73_ANOGA AGAP005043-PB OS=Anopheles gambiae
           GN=AGAP005043 PE=4 SV=1
          Length = 855

 Score = 33.9 bits (76), Expect = 5.2
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 401 KGYHSSHDLSSVFHHHNITKGHHSS 475
           KGYH SHDL  V   HN+ K H  S
Sbjct: 143 KGYHCSHDLKYVLFKHNVKKHHRLS 167


>tr|Q5C0N0|Q5C0N0_SCHJA SJCHGC06763 protein (Fragment)
           OS=Schistosoma japonicum PE=2 SV=2
          Length = 139

 Score = 33.5 bits (75), Expect = 6.7
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +2

Query: 386 LYNMTKGYHSSHDLSSVFHHHNIT--KGHHSSRCSSSL 493
           +Y+ TK  HS H  S+ +HHH+    K  HSS   SSL
Sbjct: 25  VYSSTKTSHSHHSSSTTYHHHHDRRKKRRHSSSSRSSL 62


>tr|Q642T9|Q642T9_XENTR Homeobox A1 OS=Xenopus tropicalis GN=hoxa1
           PE=2 SV=1
          Length = 323

 Score = 33.1 bits (74), Expect = 8.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 407 YHSSHDLSSVFHHHNITKGHHSSRCSSSLGRHNITKGYS 523
           +H  H   +  HH+N+   +  + C S+ G  N + GYS
Sbjct: 66  HHHHHQAGAFQHHNNLGMSYTHTSCGSNYGMQNFSPGYS 104