DK954525 |
Clone id |
TST39A01NGRL0020_K18 |
Library |
TST39 |
Length |
577 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_K18. 5' end sequence. |
Accession |
DK954525 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL196Contig1 |
Sequence |
GACGGCTTGTTGCCGTCTTCTGCACCTTCTGTGCGTTTGTGTAGGGTTTGAGGAACCGTC CTAGGTTGGGTCTTCTCCTTTAAGGTTTCCTTCCTCTATCAGGGTTTCGACCATGGCTGC TGCCACAGAATACCGCTGCTTCGTGGGAGGCCTAGCCTGGTCTACCAGCGACCAGGGCCT CGAAGATGCTTTCAGTCCCTACGGCCAAGTGATCGAGTCCAAGGTGATAAATGATCGGGA GACTGGGAGGTCTCGTGGGTTTGGTTTTGTCACCTTTGCTGATGAGCAGTCCATGATGGA CGCAATTGAGGGCATGAATGGAAAAGATTTGGATGGGCGAAGCATCACTGTGAACCAGGC CCAAAGTCGCAGTGGAGGTGGAGGTGGAGGTGGAGGTGGCTATCGAGGATCCGGAGGTGG GGGTGGAGGCTATAGCAGTGGTTCACGCTATGGTGACAGGGAAAGTGGGTATGGAGGAAG GTCAAATGGAGGTGGCTATGGTGGTGGGCGGGAGCGCAGCAGTTATGGTGGAGGAGGTGG TGTTGGATATGGCGAAAGGGGGAAGAAATGGTTATGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49310 |
Definition |
sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba |
Align length |
79 |
Score (bit) |
139.0 |
E-value |
1.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954525|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_K18, 5' (577 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=S... 139 1e-32 sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabi... 136 7e-32 sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-ind... 135 1e-31 sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorgh... 135 1e-31 sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=S... 135 2e-31 sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus ... 134 3e-31 sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Bra... 129 1e-29 sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabi... 126 7e-29 sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragmen... 95 2e-19 sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitocho... 94 6e-19 sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=... 92 1e-18 sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus... 92 2e-18 sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pong... 92 2e-18 sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus ... 92 2e-18 sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo... 92 2e-18 sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cric... 92 2e-18 sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=... 90 9e-18 sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic O... 89 1e-17 sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=... 89 2e-17 sp|Q9ZUU4|ROC1_ARATH Putative ribonucleoprotein At2g37220, chlor... 88 4e-17 sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=... 87 5e-17 sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 87 6e-17 sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus muscu... 87 8e-17 sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=... 86 1e-16 sp|O93235|CIRBP_XENLA Cold-inducible RNA-binding protein OS=Xeno... 85 3e-16 sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic O... 84 5e-16 sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=... 84 5e-16 sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapi... 83 9e-16 sp|P39697|RT19_ARATH 40S ribosomal protein S19, mitochondrial OS... 79 2e-14 sp|A5A6M3|HNRPG_PANTR Heterogeneous nuclear ribonucleoprotein G ... 78 3e-14
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1 Length = 166
Score = 139 bits (349), Expect = 1e-32 Identities = 64/79 (81%), Positives = 73/79 (92%) Frame = +2
Query: 128 EYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMMDAI 307 EYRCFVGGLAW+T D+ LE AFS YG+V++SK+INDRETGRSRGFGFVTF DE+SM DAI Sbjct: 7 EYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66
Query: 308 EGMNGKDLDGRSITVNQAQ 364 EGMNG+DLDGRSITVN+AQ Sbjct: 67 EGMNGQDLDGRSITVNEAQ 85
>sp|Q03250|GRP7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1 Length = 176
Score = 136 bits (343), Expect = 7e-32 Identities = 63/79 (79%), Positives = 72/79 (91%) Frame = +2
Query: 128 EYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMMDAI 307 EYRCFVGGLAW+T D+ LE AF+ YG VI+SK+INDRETGRSRGFGFVTF DE++M DAI Sbjct: 7 EYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAI 66
Query: 308 EGMNGKDLDGRSITVNQAQ 364 EGMNG+DLDGRSITVN+AQ Sbjct: 67 EGMNGQDLDGRSITVNEAQ 85
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1 Length = 157
Score = 135 bits (340), Expect = 1e-31 Identities = 62/83 (74%), Positives = 75/83 (90%) Frame = +2
Query: 116 AAATEYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSM 295 AA EYRCFVGGLAW+TS++ LE+AF+ YG++++SKVI DRETGRSRGFGFVTF+ E SM Sbjct: 3 AADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSM 62
Query: 296 MDAIEGMNGKDLDGRSITVNQAQ 364 +DAIE MNGK+LDGR+ITVNQAQ Sbjct: 63 LDAIENMNGKELDGRNITVNQAQ 85
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1 Length = 168
Score = 135 bits (340), Expect = 1e-31 Identities = 64/83 (77%), Positives = 75/83 (90%) Frame = +2
Query: 116 AAATEYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSM 295 AA EYRCFVGGLAW+T+++ LE AF+ +GQVI+SKVI DRETGRSRGFGFVTF+ EQSM Sbjct: 3 AADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSM 62
Query: 296 MDAIEGMNGKDLDGRSITVNQAQ 364 +DAIE MNGK+LDGR+ITVNQAQ Sbjct: 63 LDAIENMNGKELDGRNITVNQAQ 85
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1 Length = 169
Score = 135 bits (339), Expect = 2e-31 Identities = 61/79 (77%), Positives = 73/79 (92%) Frame = +2
Query: 128 EYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMMDAI 307 EYRCFVGGLAW+T ++ LE AFS +G++++SK+INDRETGRSRGFGFVTF DE+SM DAI Sbjct: 7 EYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 66
Query: 308 EGMNGKDLDGRSITVNQAQ 364 EGMNG+DLDGRSITVN+AQ Sbjct: 67 EGMNGQDLDGRSITVNEAQ 85
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1 Length = 157
Score = 134 bits (338), Expect = 3e-31 Identities = 61/82 (74%), Positives = 73/82 (89%) Frame = +2
Query: 119 AATEYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMM 298 A EYRCFVGGLAW+T+D+ LE AFS +G + +SK+INDRETGRSRGFGFVTF DE+SM Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 299 DAIEGMNGKDLDGRSITVNQAQ 364 DAIEGMNG++LDGR+ITVN+AQ Sbjct: 62 DAIEGMNGQELDGRNITVNEAQ 83
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1 Length = 169
Score = 129 bits (324), Expect = 1e-29 Identities = 60/79 (75%), Positives = 70/79 (88%) Frame = +2
Query: 128 EYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMMDAI 307 EYRCFVGGLAW+T D LE FS +G+VI+SK+INDRETGRSRGFGFVTF DE+SM DAI Sbjct: 5 EYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAI 64
Query: 308 EGMNGKDLDGRSITVNQAQ 364 + MNGK+LDGR+ITVN+AQ Sbjct: 65 DEMNGKELDGRTITVNEAQ 83
>sp|Q03251|GRP8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1 Length = 169
Score = 126 bits (317), Expect = 7e-29 Identities = 58/79 (73%), Positives = 70/79 (88%) Frame = +2
Query: 128 EYRCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMMDAI 307 EYRCFVGGLAW+T+D+ L+ FS +G VI+SK+INDRE+GRSRGFGFVTF DE++M DAI Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 308 EGMNGKDLDGRSITVNQAQ 364 E MNGK+LDGR ITVN+AQ Sbjct: 65 EEMNGKELDGRVITVNEAQ 83
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor GN=GRP1 PE=2 SV=1 Length = 142
Score = 95.1 bits (235), Expect = 2e-19 Identities = 45/62 (72%), Positives = 54/62 (87%) Frame = +2
Query: 179 LEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMMDAIEGMNGKDLDGRSITVNQ 358 L AFS YG+V+ESK+I DRET RSRGFGFVTF+ E++M AIEGMNGK+LDGR+ITVN+ Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62
Query: 359 AQ 364 AQ Sbjct: 63 AQ 64
>sp|Q9SVM8|GRP2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1 Length = 158
Score = 93.6 bits (231), Expect = 6e-19 Identities = 44/76 (57%), Positives = 56/76 (73%) Frame = +2
Query: 134 RCFVGGLAWSTSDQGLEDAFSPYGQVIESKVINDRETGRSRGFGFVTFADEQSMMDAIEG 313 + F+GGL+W T D L DAF+ +G V+++KVI DRETGRSRGFGFV F DE + AI Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 314 MNGKDLDGRSITVNQA 361 M+GK+L+GR I VN A Sbjct: 96 MDGKELNGRHIRVNPA 111
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8RW11 |
Definition |
tr|Q8RW11|Q8RW11_RUMOB Putative glycine rich protein OS=Rumex obtusifolius |
Align length |
84 |
Score (bit) |
142.0 |
E-value |
2.0e-32 |
Report |
|