DK954562 |
Clone id |
TST39A01NGRL0020_M07 |
Library |
TST39 |
Length |
630 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_M07. 5' end sequence. |
Accession |
DK954562 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1200Contig1 |
Sequence |
CACACACACACACACACACACACACACAAGCAGCAGGTCGAAACTATGGCTACACATGAA GATCACGACATAGGCGCGCCTGCAGCGATGGAAAGCCCATCGACTACAACAAACACGCAT GACACTGGTGCTGCTACCAGTCATCATTTGACGAGCTTCTACTGGGGCCATCTAGCTACC ATTCTGTTTGACGACTGGCGGACGACCTCGCCGGGCACCTACGTCGCCTCTCTGCTGGCC CTCCTACTCATCTCCTTCCTCTACCAATACCTTGAGCGCCTCACTTCGCCCTCCTCCCCT ATCCTCTTGCCCTATTCCTCCTCCTCTTCCTCATGCTGTCCAACCACCCCTCACAACAAT AACAATCATTCTAAACCAATTTCCCCTTCCCCCCACCAGCTACCCCTCCCCACCAAACTC CTCCTCACTTTGCTCTTCTCCCTCCGCGTCGGCCTCGCCTACCTTCTCATGCTCGCCGTC ATGTCCTTCAACGGCGGCGTCTTCCTCGCCGTCATCCTCGGACTCTCTGCTGGCTTCTTC GTCTTCCGCACAGACATCCATACGCCCAAATGTGTGCCGGTACTTTCAGCCTCTGATGCC AATCTCCACCCTTGAATCCAGCTTGCGCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q39065 |
Definition |
sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana |
Align length |
37 |
Score (bit) |
52.4 |
E-value |
2.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q93VM8 |
Definition |
tr|Q93VM8|Q93VM8_ARATH AT5g20650/T1M15_50 (COPT5) OS=Arabidopsis thaliana |
Align length |
137 |
Score (bit) |
65.9 |
E-value |
2.0e-09 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954562|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_M07, 5' (630 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q93VM8|Q93VM8_ARATH AT5g20650/T1M15_50 (COPT5) OS=Arabidopsis... 66 2e-09 tr|Q69P80|Q69P80_ORYSJ Os09g0440700 protein OS=Oryza sativa subs... 64 6e-09 tr|A2Z1P3|A2Z1P3_ORYSI Putative uncharacterized protein OS=Oryza... 64 6e-09 tr|A7PNX0|A7PNX0_VITVI Chromosome chr8 scaffold_23, whole genome... 59 3e-07 tr|A9NY93|A9NY93_PICSI Putative uncharacterized protein OS=Picea... 58 4e-07 tr|A9PD84|A9PD84_POPTR Putative uncharacterized protein OS=Popul... 58 5e-07 tr|A7P4V3|A7P4V3_VITVI Chromosome chr4 scaffold_6, whole genome ... 58 5e-07 tr|Q8SAA4|Q8SAA4_ARATH COPT5 (Fragment) OS=Arabidopsis thaliana ... 57 7e-07 tr|Q60EN8|Q60EN8_ORYSJ Os05g0424700 protein OS=Oryza sativa subs... 57 7e-07 tr|A2Y4V1|A2Y4V1_ORYSI Putative uncharacterized protein OS=Oryza... 57 7e-07 tr|A9S7E1|A9S7E1_PHYPA Ctr family transporter OS=Physcomitrella ... 57 1e-06 tr|Q94EE4|Q94EE4_ORYSJ Putative copper transporter protein OS=Or... 55 3e-06 tr|Q0JIY5|Q0JIY5_ORYSJ Os01g0770700 protein OS=Oryza sativa subs... 55 3e-06 tr|B8AA54|B8AA54_ORYSI Putative uncharacterized protein OS=Oryza... 55 3e-06 tr|Q6Z0Q9|Q6Z0Q9_ORYSJ COPT5-like protein OS=Oryza sativa subsp.... 55 5e-06 tr|A2YVV8|A2YVV8_ORYSI Putative uncharacterized protein OS=Oryza... 55 5e-06 tr|A9SWV9|A9SWV9_PHYPA Ctr family copper transporter OS=Physcomi... 54 6e-06 tr|Q8GWP3|Q8GWP3_ARATH Putative copper transport protein OS=Arab... 54 1e-05 tr|B6UHR5|B6UHR5_MAIZE Copper transporter 1 OS=Zea mays PE=2 SV=1 54 1e-05 tr|A9PEN3|A9PEN3_POPTR Putative uncharacterized protein OS=Popul... 54 1e-05 tr|Q5ZD08|Q5ZD08_ORYSJ cDNA clone:002-156-C01, full insert seque... 52 2e-05 tr|Q547P9|Q547P9_ARATH Copper transporter COPT1 (Copper transpor... 52 2e-05 tr|Q0JIY4|Q0JIY4_ORYSJ Os01g0770800 protein (Fragment) OS=Oryza ... 52 2e-05 tr|A7NYP4|A7NYP4_VITVI Chromosome chr6 scaffold_3, whole genome ... 52 2e-05 tr|A2ZY89|A2ZY89_ORYSJ Putative uncharacterized protein OS=Oryza... 52 2e-05 tr|Q9STG2|Q9STG2_ARATH Copper transporter protein homolog (At3g4... 52 4e-05 tr|Q0ZB34|Q0ZB34_CHLRE CTR family transmembrane copper ion trans... 51 7e-05 tr|B6TTV1|B6TTV1_MAIZE Copper transporter 1 OS=Zea mays PE=2 SV=1 51 7e-05 tr|B6SJM6|B6SJM6_MAIZE Copper transporter 1 OS=Zea mays PE=2 SV=1 51 7e-05 tr|A9NYF4|A9NYF4_PICSI Putative uncharacterized protein OS=Picea... 51 7e-05
>tr|Q93VM8|Q93VM8_ARATH AT5g20650/T1M15_50 (COPT5) OS=Arabidopsis thaliana GN=At5g20650 PE=2 SV=1 Length = 146
Score = 65.9 bits (159), Expect = 2e-09 Identities = 44/137 (32%), Positives = 61/137 (44%) Frame = +1
Query: 145 HLTSFYWGHLATILFDDWRTTSPGTYVXXXXXXXXXXXXXXXXERXXXXXXXXXXXXXXX 324 H+T FYWG ATILFD W+T S +Y+ E Sbjct: 3 HMT-FYWGIKATILFDFWKTDSWLSYILTLIACFVFSAFYQYLENRRIQFKSLSSSRRAP 61
Query: 325 XXXXXXXXXHNNNNHSKPISPSPHQXXXXXXXXXXXXFSLRVGLAYLLMLAVMSFNGGVF 504 +++ S P+ P F + + YLLMLA MSFNGGVF Sbjct: 62 PPP------RSSSGVSAPLIPKSGTRSAAKAASVLL-FGVNAAIGYLLMLAAMSFNGGVF 114
Query: 505 LAVILGLSAGFFVFRTD 555 +A+++GL+AG+ VFR+D Sbjct: 115 IAIVVGLTAGYAVFRSD 131
>tr|Q69P80|Q69P80_ORYSJ Os09g0440700 protein OS=Oryza sativa subsp. japonica GN=OJ1344_B01.31 PE=2 SV=1 Length = 149
Score = 64.3 bits (155), Expect = 6e-09 Identities = 44/136 (32%), Positives = 58/136 (42%) Frame = +1
Query: 145 HLTSFYWGHLATILFDDWRTTSPGTYVXXXXXXXXXXXXXXXXERXXXXXXXXXXXXXXX 324 H+T FYWG TILFD WRT + Y+ E Sbjct: 3 HMT-FYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVKLLAGAKPAS 61
Query: 325 XXXXXXXXXHNNNNHSKPISPSPHQXXXXXXXXXXXXFSLRVGLAYLLMLAVMSFNGGVF 504 ++ + + PS F + GL YLLMLAVMSFNGGVF Sbjct: 62 IPPPAS----SDAARAPLLLPSSAAGRWPARLATAGLFGVNSGLGYLLMLAVMSFNGGVF 117
Query: 505 LAVILGLSAGFFVFRT 552 +AV++GL+AG+ FR+ Sbjct: 118 VAVVVGLAAGYLAFRS 133
>tr|A2Z1P3|A2Z1P3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31527 PE=4 SV=1 Length = 149
Score = 64.3 bits (155), Expect = 6e-09 Identities = 44/136 (32%), Positives = 58/136 (42%) Frame = +1
Query: 145 HLTSFYWGHLATILFDDWRTTSPGTYVXXXXXXXXXXXXXXXXERXXXXXXXXXXXXXXX 324 H+T FYWG TILFD WRT + Y+ E Sbjct: 3 HMT-FYWGKDVTILFDGWRTATWTGYLLSLVALLLASAFYQYLEAFRIRVKLLAGAKPAS 61
Query: 325 XXXXXXXXXHNNNNHSKPISPSPHQXXXXXXXXXXXXFSLRVGLAYLLMLAVMSFNGGVF 504 ++ + + PS F + GL YLLMLAVMSFNGGVF Sbjct: 62 IPPPAS----SDAARAPLLLPSSAAGRWPARLATAGLFGVNSGLGYLLMLAVMSFNGGVF 117
Query: 505 LAVILGLSAGFFVFRT 552 +AV++GL+AG+ FR+ Sbjct: 118 VAVVVGLAAGYLAFRS 133
>tr|A7PNX0|A7PNX0_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021423001 PE=4 SV=1 Length = 287
Score = 58.5 bits (140), Expect = 3e-07 Identities = 40/134 (29%), Positives = 52/134 (38%) Frame = +1
Query: 145 HLTSFYWGHLATILFDDWRTTSPGTYVXXXXXXXXXXXXXXXXERXXXXXXXXXXXXXXX 324 H+T F+WG A ILF W TS G Y R Sbjct: 29 HMT-FFWGKNAEILFSGWPGTSSGMYALALILVFVVALLLEWLSR--------------- 72
Query: 325 XXXXXXXXXHNNNNHSKPISPSPHQXXXXXXXXXXXXFSLRVGLAYLLMLAVMSFNGGVF 504 S + P PH +++R G +Y+LMLAVMSFNGG+F Sbjct: 73 ---------------SSLLKPGPHNVTTGLLQTAL--YAIRSGFSYMLMLAVMSFNGGIF 115
Query: 505 LAVILGLSAGFFVF 546 LA + G + GF +F Sbjct: 116 LAAVAGHALGFLIF 129
Score = 45.1 bits (105), Expect = 0.004 Identities = 21/35 (60%), Positives = 27/35 (77%) Frame = +1
Query: 439 SLRVGLAYLLMLAVMSFNGGVFLAVILGLSAGFFV 543 ++R+GL YL+MLAVMSFN GV L I G + GFF+ Sbjct: 234 AVRMGLGYLVMLAVMSFNVGVLLVAIAGHAVGFFL 268
>tr|A9NY93|A9NY93_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 137
Score = 58.2 bits (139), Expect = 4e-07 Identities = 27/39 (69%), Positives = 30/39 (76%) Frame = +1
Query: 436 FSLRVGLAYLLMLAVMSFNGGVFLAVILGLSAGFFVFRT 552 F L GL YLLMLA MSFNGGVF+AVILG G+F FR+ Sbjct: 85 FGLNAGLGYLLMLAAMSFNGGVFIAVILGFVVGYFFFRS 123
>tr|A9PD84|A9PD84_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 149
Score = 57.8 bits (138), Expect = 5e-07 Identities = 25/40 (62%), Positives = 33/40 (82%) Frame = +1
Query: 436 FSLRVGLAYLLMLAVMSFNGGVFLAVILGLSAGFFVFRTD 555 F + G+ YLLML VMSFNGGVFLAV+LGL+ G+ +FR++ Sbjct: 96 FGINSGIGYLLMLVVMSFNGGVFLAVVLGLAIGYLLFRSE 135
>tr|A7P4V3|A7P4V3_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032295001 PE=4 SV=1 Length = 137
Score = 57.8 bits (138), Expect = 5e-07 Identities = 42/138 (30%), Positives = 55/138 (39%), Gaps = 2/138 (1%) Frame = +1
Query: 145 HLTSFYWGHLATILFDDWRTTSPGTYVXXXXXXXXXXXXXXXXERXXXXXXXXXXXXXXX 324 H+T FYW T+L D W+T S +Y E Sbjct: 3 HMT-FYWSTSVTLLIDSWKTESWASYGLTLLACLIASAFYQYLEDRRIRLKLIAASVG-- 59
Query: 325 XXXXXXXXXHNNNNHSKPISPSPHQXXXXXXXXXXXX--FSLRVGLAYLLMLAVMSFNGG 498 S P S SP + F + + YL+MLAVMSFNGG Sbjct: 60 ---------------SSPASASPIEEPLLHATKFAGAALFGINSAIGYLIMLAVMSFNGG 104
Query: 499 VFLAVILGLSAGFFVFRT 552 VFLAV+LGL+ G+ +FR+ Sbjct: 105 VFLAVVLGLAIGYLLFRS 122
>tr|Q8SAA4|Q8SAA4_ARATH COPT5 (Fragment) OS=Arabidopsis thaliana GN=COPT5 PE=2 SV=1 Length = 132
Score = 57.4 bits (137), Expect = 7e-07 Identities = 24/40 (60%), Positives = 33/40 (82%) Frame = +1
Query: 436 FSLRVGLAYLLMLAVMSFNGGVFLAVILGLSAGFFVFRTD 555 F + + YLLMLA MSFNGGVF+A+++GL+AG+ VFR+D Sbjct: 78 FGVNAAIGYLLMLAAMSFNGGVFIAIVVGLTAGYAVFRSD 117
>tr|Q60EN8|Q60EN8_ORYSJ Os05g0424700 protein OS=Oryza sativa subsp. japonica GN=OJ1212_B02.11 PE=2 SV=1 Length = 151
Score = 57.4 bits (137), Expect = 7e-07 Identities = 25/40 (62%), Positives = 34/40 (85%) Frame = +1
Query: 439 SLRVGLAYLLMLAVMSFNGGVFLAVILGLSAGFFVFRTDI 558 ++RVG+AYL+MLA+MSFNGGVFLA++ G +AGF FR + Sbjct: 92 AVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGL 131
>tr|A2Y4V1|A2Y4V1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20027 PE=4 SV=1 Length = 151
Score = 57.4 bits (137), Expect = 7e-07 Identities = 25/40 (62%), Positives = 34/40 (85%) Frame = +1
Query: 439 SLRVGLAYLLMLAVMSFNGGVFLAVILGLSAGFFVFRTDI 558 ++RVG+AYL+MLA+MSFNGGVFLA++ G +AGF FR + Sbjct: 92 AVRVGVAYLIMLALMSFNGGVFLAIVAGHAAGFLAFRAGL 131
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