DK954568 |
Clone id |
TST39A01NGRL0020_M13 |
Library |
TST39 |
Length |
614 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_M13. 5' end sequence. |
Accession |
DK954568 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3251Contig1 |
Sequence |
GATATCGTCGAGGGGCGTTCTCAAAATGGAGCATGGCCTCTCACTACTTCCCAAGCGCCC ACAACCCCAAGACACAGAAAACGCGCACCTACACTCACGCAACAGAGCTCTCTGCTACGA GAGATAGCTAGAGAGAGGGAGAGAGAGTCCTTGTATGTGTACTGTGCGTCGCGCCGCTCC GCTCTTCCCTCTCTCTGGTAATGGACAACCCAAATGATCCAGCAACTCGTTGGATCTCGT TCCTTGAGCACAACCTTCTTGACATTGAACCTGCTCCCAACTCCGCAGAAGCCCCTTTCT GGAATGCCTGCAGTGAAAACGAGAACCTGAAGGCCGAATACAACGTCTTGAACCATGACA ATAACACTAAGAAAAGGACAAGAGAAGAGTATTCTAGTGGAGCATGCAAAAGGGACGATT GCCCGAGTGGAGCGTGTGGAAAGGCATGTCGAGAGAAGCTGCGTAGGGACAGGCTAAACG ACAGGTTCATGGAGTTGAGTGCGATTCTCGAGCCAGACAAGCCGCCAAAGATGGATAAAG CTTCAATCCTCCGTGATGCAGCTAGGATCTTGGGACAGTTACGGGTCGAAGCTCAGCAGC TGAAAGATGCTAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9FH37 |
Definition |
sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis thaliana |
Align length |
74 |
Score (bit) |
91.7 |
E-value |
3.0e-18 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NRC9 |
Definition |
tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
131 |
Score (bit) |
107.0 |
E-value |
4.0e-22 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954568|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_M13, 5' (614 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea... 107 4e-22 tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella paten... 105 3e-21 tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella paten... 98 3e-19 tr|A9TH67|A9TH67_PHYPA Predicted protein (Fragment) OS=Physcomit... 94 5e-18 tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome... 94 6e-18 tr|Q7XXQ5|Q7XXQ5_ORYSJ BHLH transcription factor OS=Oryza sativa... 92 2e-17 tr|B8B796|B8B796_ORYSI Putative uncharacterized protein OS=Oryza... 92 2e-17 tr|A3BKT7|A3BKT7_ORYSJ Putative uncharacterized protein OS=Oryza... 92 2e-17 tr|Q6ZGM4|Q6ZGM4_ORYSJ BHLH transcription factor OS=Oryza sativa... 91 4e-17 tr|A2X043|A2X043_ORYSI Putative uncharacterized protein OS=Oryza... 91 4e-17 tr|B4FUY2|B4FUY2_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 91 5e-17 tr|B7FHK4|B7FHK4_MEDTR Putative uncharacterized protein OS=Medic... 91 7e-17 tr|B6SST8|B6SST8_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 91 7e-17 tr|B4FGY4|B4FGY4_MAIZE Putative uncharacterized protein OS=Zea m... 91 7e-17 tr|B7FHX6|B7FHX6_MEDTR Putative uncharacterized protein OS=Medic... 90 9e-17 tr|A3BPH0|A3BPH0_ORYSJ Putative uncharacterized protein OS=Oryza... 90 9e-17 tr|B6TNC2|B6TNC2_MAIZE BHLH transcription factor OS=Zea mays PE=... 89 2e-16 tr|B4FRK4|B4FRK4_MAIZE Putative uncharacterized protein OS=Zea m... 89 2e-16 tr|Q6ZKI8|Q6ZKI8_ORYSJ Os08g0138500 protein OS=Oryza sativa subs... 88 3e-16 tr|A2YR23|A2YR23_ORYSI Putative uncharacterized protein OS=Oryza... 88 3e-16 tr|B6T879|B6T879_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 87 8e-16 tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotia... 87 8e-16 tr|A9PJ95|A9PJ95_POPJC Putative uncharacterized protein OS=Popul... 86 1e-15 tr|B6UCV4|B6UCV4_MAIZE BHLH transcription factor OS=Zea mays PE=... 85 4e-15 tr|Q84PA6|Q84PA6_ORYSJ Helix-loop-helix-like protein (Fragment) ... 84 5e-15 tr|B6TTJ8|B6TTJ8_MAIZE BHLH transcription factor OS=Zea mays PE=... 79 2e-13 tr|B4G0P0|B4G0P0_MAIZE Putative uncharacterized protein OS=Zea m... 70 1e-10 tr|B8A1W1|B8A1W1_MAIZE Putative uncharacterized protein OS=Zea m... 69 3e-10 tr|A3B4Q1|A3B4Q1_ORYSJ Putative uncharacterized protein OS=Oryza... 65 3e-09 tr|A2Y5C1|A2Y5C1_ORYSI Putative uncharacterized protein OS=Oryza... 65 3e-09
>tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 238
Score = 107 bits (268), Expect = 4e-22 Identities = 56/131 (42%), Positives = 79/131 (60%) Frame = +3
Query: 222 ATRWISFLEHNLLDIEPAPNSAEAPFWNACSENENLKAEYNVLNHDNNTKKRTREEYSSG 401 + +W+S+ + LLD A FW N+ +V +N +E+ Sbjct: 6 SNKWLSYFDEPLLDEVGVGQPANPFFWCGPGINDQPDVSGSVEIDGSNKDIDEQEKLCPR 65
Query: 402 ACKRDDCPSGACGKACREKLRRDRLNDRFMELSAILEPDKPPKMDKASILRDAARILGQL 581 R++ G KACREK+RRDRLNDRFMELS++LEP +PPK DKA+IL DAAR++ QL Sbjct: 66 KRPREESSGGPGSKACREKMRRDRLNDRFMELSSVLEPGRPPKTDKATILSDAARVMSQL 125
Query: 582 RVEAQQLKDAN 614 R +AQ+LK++N Sbjct: 126 RADAQKLKESN 136
>tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_195760 PE=4 SV=1 Length = 238
Score = 105 bits (261), Expect = 3e-21 Identities = 60/139 (43%), Positives = 88/139 (63%) Frame = +3
Query: 198 VMDNPNDPATRWISFLEHNLLDIEPAPNSAEAPFWNACSENENLKAEYNVLNHDNNTKKR 377 +M +P++ ++W+S+L NLL E S PF+ ++ + + ++ N + + Sbjct: 1 MMSSPSN-TSKWMSYLAENLLAEEEVQPSN--PFFWCTTQQPVEQIDCSIDNECSKGESD 57
Query: 378 TREEYSSGACKRDDCPSGACGKACREKLRRDRLNDRFMELSAILEPDKPPKMDKASILRD 557 E+ S R++ SG+ KACREK+RRDRLNDRF++LSA LEP +PPK DKA+IL D Sbjct: 58 VPEKSCSRKRSREEGSSGSGNKACREKMRRDRLNDRFLDLSAALEPGRPPKTDKATILSD 117
Query: 558 AARILGQLRVEAQQLKDAN 614 A RIL QLR EAQ L ++N Sbjct: 118 AVRILTQLRAEAQGLTESN 136
>tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_67124 PE=4 SV=1 Length = 201
Score = 98.2 bits (243), Expect = 3e-19 Identities = 57/100 (57%), Positives = 71/100 (71%) Frame = +3
Query: 315 ENENLKAEYNVLNHDNNTKKRTREEYSSGACKRDDCPSGACGKACREKLRRDRLNDRFME 494 +NE K + +VL + ++KR+RE+ AC SGA KACREK+RRDRLNDRF+E Sbjct: 11 DNECSKGDSDVLEK-SCSRKRSRED----AC------SGAGNKACREKMRRDRLNDRFLE 59
Query: 495 LSAILEPDKPPKMDKASILRDAARILGQLRVEAQQLKDAN 614 LSA LEP +PPK DKA+IL DA RIL QLR EAQ L ++N Sbjct: 60 LSAALEPGRPPKTDKATILSDAVRILTQLRAEAQGLTESN 99
>tr|A9TH67|A9TH67_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_145569 PE=4 SV=1 Length = 172
Score = 94.4 bits (233), Expect = 5e-18 Identities = 46/68 (67%), Positives = 54/68 (79%) Frame = +3
Query: 411 RDDCPSGACGKACREKLRRDRLNDRFMELSAILEPDKPPKMDKASILRDAARILGQLRVE 590 R++ GA KACREK+RRDRLNDRF+EL AILEP +PPK DKA+IL DA RIL QLR E Sbjct: 3 REEISGGAGNKACREKMRRDRLNDRFLELGAILEPGRPPKTDKATILSDAVRILTQLRAE 62
Query: 591 AQQLKDAN 614 AQ L ++N Sbjct: 63 AQGLTESN 70
>tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027432001 PE=4 SV=1 Length = 237
Score = 94.0 bits (232), Expect = 6e-18 Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 14/145 (9%) Frame = +3
Query: 222 ATRWISFLEHNLLDIEPAPNSAEAPF-----WN---ACSENENLKAEYNVLNHDNN---- 365 AT W+ E+ L++ P P+S A W A + + N+ E + D++ Sbjct: 6 ATNWL--YEYGLIEDIPVPDSNFANTNSGFAWTPVQALNTSANVSGEIDGSFGDSDGIKE 63
Query: 366 --TKKRTREEYSSGACKRDDCPSGACGKACREKLRRDRLNDRFMELSAILEPDKPPKMDK 539 +KKR R E S GA + KACREKLRRDRLND+FMEL +ILEP +PPK DK Sbjct: 64 TGSKKRVRSE-SCGA---------SSSKACREKLRRDRLNDKFMELGSILEPGRPPKTDK 113
Query: 540 ASILRDAARILGQLRVEAQQLKDAN 614 +SIL DA R++ QLR E+Q+LKD+N Sbjct: 114 SSILIDAVRMVTQLRGESQKLKDSN 138
>tr|Q7XXQ5|Q7XXQ5_ORYSJ BHLH transcription factor OS=Oryza sativa subsp. japonica GN=Os07g0543000 PE=2 SV=1 Length = 256
Score = 92.4 bits (228), Expect = 2e-17 Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 1/117 (0%) Frame = +3
Query: 267 EPAPNSAEAPFWNACSE-NENLKAEYNVLNHDNNTKKRTREEYSSGACKRDDCPSGACGK 443 +P + AP NAC+E N ++ E+ + T KR R E + PS K Sbjct: 53 QPVAPATAAP--NACAEINGSVDCEHG---KEQPTNKRPRSESGTR-------PSS---K 97
Query: 444 ACREKLRRDRLNDRFMELSAILEPDKPPKMDKASILRDAARILGQLRVEAQQLKDAN 614 ACREK+RRD+LN+RF+EL A+LEP K PKMDK+SIL DA R++ +LR EAQ+LK++N Sbjct: 98 ACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMAELRSEAQKLKESN 154
>tr|B8B796|B8B796_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_26369 PE=4 SV=1 Length = 256
Score = 92.4 bits (228), Expect = 2e-17 Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 1/117 (0%) Frame = +3
Query: 267 EPAPNSAEAPFWNACSE-NENLKAEYNVLNHDNNTKKRTREEYSSGACKRDDCPSGACGK 443 +P + AP NAC+E N ++ E+ + T KR R E + PS K Sbjct: 53 QPVAPATAAP--NACAEINGSVDCEHG---KEQPTNKRPRSESGTR-------PSS---K 97
Query: 444 ACREKLRRDRLNDRFMELSAILEPDKPPKMDKASILRDAARILGQLRVEAQQLKDAN 614 ACREK+RRD+LN+RF+EL A+LEP K PKMDK+SIL DA R++ +LR EAQ+LK++N Sbjct: 98 ACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMAELRSEAQKLKESN 154
>tr|A3BKT7|A3BKT7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_023659 PE=4 SV=1 Length = 236
Score = 92.0 bits (227), Expect = 2e-17 Identities = 42/71 (59%), Positives = 56/71 (78%) Frame = +3
Query: 402 ACKRDDCPSGACGKACREKLRRDRLNDRFMELSAILEPDKPPKMDKASILRDAARILGQL 581 AC R + + KACREK+RRD+LN+RF+EL A+LEP K PKMDK+SIL DA R++ +L Sbjct: 64 ACPRSESGTRPSSKACREKVRRDKLNERFLELGAVLEPGKTPKMDKSSILNDAIRVMAEL 123
Query: 582 RVEAQQLKDAN 614 R EAQ+LK++N Sbjct: 124 RSEAQKLKESN 134
>tr|Q6ZGM4|Q6ZGM4_ORYSJ BHLH transcription factor OS=Oryza sativa subsp. japonica GN=OJ1442_E05.19 PE=2 SV=1 Length = 236
Score = 91.3 bits (225), Expect = 4e-17 Identities = 47/81 (58%), Positives = 61/81 (75%) Frame = +3
Query: 372 KRTREEYSSGACKRDDCPSGACGKACREKLRRDRLNDRFMELSAILEPDKPPKMDKASIL 551 KR R+E SS SG KACREK+RRDRLNDRF+ELS+++ PDK K+DKA+IL Sbjct: 57 KRGRDESSS---------SGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANIL 107
Query: 552 RDAARILGQLRVEAQQLKDAN 614 DAAR+L +LR EA++LK++N Sbjct: 108 SDAARLLAELRGEAEKLKESN 128
>tr|A2X043|A2X043_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05583 PE=4 SV=1 Length = 236
Score = 91.3 bits (225), Expect = 4e-17 Identities = 47/81 (58%), Positives = 61/81 (75%) Frame = +3
Query: 372 KRTREEYSSGACKRDDCPSGACGKACREKLRRDRLNDRFMELSAILEPDKPPKMDKASIL 551 KR R+E SS SG KACREK+RRDRLNDRF+ELS+++ PDK K+DKA+IL Sbjct: 57 KRGRDESSS---------SGPKSKACREKIRRDRLNDRFLELSSVINPDKQAKLDKANIL 107
Query: 552 RDAARILGQLRVEAQQLKDAN 614 DAAR+L +LR EA++LK++N Sbjct: 108 SDAARLLAELRGEAEKLKESN 128
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