DK954592 |
Clone id |
TST39A01NGRL0020_N14 |
Library |
TST39 |
Length |
449 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_N14. 5' end sequence. |
Accession |
DK954592 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL184Contig1 |
Sequence |
TCGGTTTTCTCTGCTCCCATTTCGACAGGAGTGCTGCACTCTTGATTCACATCTGCAGCA GCCATGACGAAGAGAACAAAGAAGGCAGGCATTGTTGGCAAATATGGAACCCGTTATGGC GCGAGTTTGAAAAGGCCCATCTTTTAGAACCACGGAAGCCAACATGCGAAGTACTTCTGT GAATTTTGTGGGAAGTTTGCAGTGAAGAGGAAAGCTGTTGGAATCTGGTCCTGCAAGGAC TGCAACAAGATCAAGGCCGGTGGTGCCTACACGTTAAATACTGCCAGTGCTGTAACTGTG CGTAGTACCATCAGACGATTGAGGGAGCAGGTTGAAGGATAGACTGCTGATTTGAGTGCA TGTAGTCAGAGTGGAATTGTAACTGCAGCTGCTGCAAATTTTGCTAATATGAAAACCTCT TGAACGTAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5QM99 |
Definition |
sp|Q5QM99|RL37A_ORYSJ 60S ribosomal protein L37a OS=Oryza sativa subsp. japonica |
Align length |
91 |
Score (bit) |
160.0 |
E-value |
2.0e-39 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7E3N1 |
Definition |
tr|B7E3N1|B7E3N1_ORYSJ cDNA clone:001-027-A05, full insert sequence OS=Oryza sativa subsp. japonica |
Align length |
91 |
Score (bit) |
160.0 |
E-value |
3.0e-38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954592|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_N14, 5' (427 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7E3N1|B7E3N1_ORYSJ cDNA clone:001-027-A05, full insert seque... 160 3e-38 tr|B4FHM5|B4FHM5_MAIZE 60S ribosomal protein L37a OS=Zea mays PE... 160 3e-38 tr|A9NL27|A9NL27_PICSI Putative uncharacterized protein OS=Picea... 160 3e-38 tr|A2Y7B6|A2Y7B6_ORYSI Putative uncharacterized protein OS=Oryza... 160 3e-38 tr|A9PAT8|A9PAT8_POPTR Putative uncharacterized protein OS=Popul... 160 4e-38 tr|A9NT67|A9NT67_PICSI Putative uncharacterized protein OS=Picea... 160 4e-38 tr|A7PK59|A7PK59_VITVI Chromosome chr15 scaffold_19, whole genom... 159 9e-38 tr|Q5GMM4|Q5GMM4_CAPCH 60S ribosomal protein L37a OS=Capsicum ch... 158 1e-37 tr|B7FGL8|B7FGL8_MEDTR Putative uncharacterized protein OS=Medic... 158 1e-37 tr|B6SX68|B6SX68_MAIZE 60S ribosomal protein L37a OS=Zea mays PE... 158 1e-37 tr|B4FMW5|B4FMW5_MAIZE Putative uncharacterized protein OS=Zea m... 158 1e-37 tr|A9PAM1|A9PAM1_POPTR Putative uncharacterized protein OS=Popul... 158 1e-37 tr|A2ZWJ4|A2ZWJ4_ORYSJ Putative uncharacterized protein OS=Oryza... 158 1e-37 tr|B6TIA2|B6TIA2_MAIZE 60S ribosomal protein L37a OS=Zea mays PE... 158 1e-37 tr|B6T831|B6T831_MAIZE 60S ribosomal protein L37a OS=Zea mays PE... 158 1e-37 tr|A9RCY9|A9RCY9_PHYPA Predicted protein OS=Physcomitrella paten... 158 1e-37 tr|B6TPN9|B6TPN9_MAIZE 60S ribosomal protein L37a OS=Zea mays PE... 156 4e-37 tr|A9RBA3|A9RBA3_PHYPA Predicted protein (Fragment) OS=Physcomit... 156 6e-37 tr|A8HY08|A8HY08_CHLRE Ribosomal protein L37a OS=Chlamydomonas r... 151 2e-35 tr|B6TBB9|B6TBB9_MAIZE 60S ribosomal protein L37a OS=Zea mays PE... 137 4e-31 tr|B8A0J3|B8A0J3_MAIZE Putative uncharacterized protein OS=Zea m... 133 5e-30 tr|A6R893|A6R893_AJECN 60S ribosomal protein L43 OS=Ajellomyces ... 129 7e-29 tr|A2QK12|A2QK12_ASPNC Contig An04c0310, complete genome OS=Aspe... 129 7e-29 tr|B2W6G0|B2W6G0_PYRTR 60S ribosomal protein L37a OS=Pyrenophora... 126 6e-28 tr|A8N9Y8|A8N9Y8_COPC7 Putative uncharacterized protein OS=Copri... 126 6e-28 tr|A8QDG2|A8QDG2_BRUMA 60S ribosomal protein L37a, putative OS=B... 125 8e-28 tr|B6HJJ3|B6HJJ3_PENCH Pc21g19530 protein OS=Penicillium chrysog... 125 8e-28 tr|Q0UK77|Q0UK77_PHANO Putative uncharacterized protein OS=Phaeo... 125 1e-27 tr|Q5KLK6|Q5KLK6_CRYNE 60s ribosomal protein l37a, putative (Put... 125 1e-27 tr|Q0C8B8|Q0C8B8_ASPTN 60S ribosomal protein L43 OS=Aspergillus ... 125 1e-27
>tr|B7E3N1|B7E3N1_ORYSJ cDNA clone:001-027-A05, full insert sequence OS=Oryza sativa subsp. japonica PE=4 SV=1 Length = 92
Score = 160 bits (405), Expect = 3e-38 Identities = 77/91 (84%), Positives = 82/91 (90%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH+KYFCEFCGKFAVKRKAVGIW CKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYT+NTASAVTVRSTIRRLREQ E Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91
>tr|B4FHM5|B4FHM5_MAIZE 60S ribosomal protein L37a OS=Zea mays PE=4 SV=1 Length = 92
Score = 160 bits (405), Expect = 3e-38 Identities = 77/91 (84%), Positives = 82/91 (90%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH+KYFCEFCGKFAVKRKAVGIW CKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYT+NTASAVTVRSTIRRLREQ E Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91
>tr|A9NL27|A9NL27_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 92
Score = 160 bits (405), Expect = 3e-38 Identities = 78/92 (84%), Positives = 82/92 (89%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH+K+FCEFCGKFAVKRKAVGIW CKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVEG 339 KIKAGGAYTLNT SAVTVRSTIRRLREQ EG Sbjct: 61 GKIKAGGAYTLNTPSAVTVRSTIRRLREQTEG 92
>tr|A2Y7B6|A2Y7B6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03269 PE=4 SV=1 Length = 92
Score = 160 bits (405), Expect = 3e-38 Identities = 77/91 (84%), Positives = 82/91 (90%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH+KYFCEFCGKFAVKRKAVGIW CKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYT+NTASAVTVRSTIRRLREQ E Sbjct: 61 GKVKAGGAYTMNTASAVTVRSTIRRLREQTE 91
>tr|A9PAT8|A9PAT8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 92
Score = 160 bits (404), Expect = 4e-38 Identities = 77/91 (84%), Positives = 83/91 (91%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH+K+FCEFCGK+AVKRKAVGIWSCKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWSCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYTLNTASAVTVRSTIRRLREQ E Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
>tr|A9NT67|A9NT67_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 92
Score = 160 bits (404), Expect = 4e-38 Identities = 77/92 (83%), Positives = 82/92 (89%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH+K+FCEFCGKFAVKRKAVGIW CKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKFAVKRKAVGIWGCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVEG 339 K+KAGGAYTLNT SAVTVRSTIRRLREQ EG Sbjct: 61 GKVKAGGAYTLNTPSAVTVRSTIRRLREQTEG 92
>tr|A7PK59|A7PK59_VITVI Chromosome chr15 scaffold_19, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019030001 PE=4 SV=1 Length = 103
Score = 159 bits (401), Expect = 9e-38 Identities = 76/91 (83%), Positives = 83/91 (91%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 +TKRTKKAGIVGKYGTRYGASL++ I SQH+KYFCEFCGK+AVKRKAVGIW+CKDC Sbjct: 12 ITKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWACKDC 71
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYTLNTASAVTVRSTIRRLREQ E Sbjct: 72 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 102
>tr|Q5GMM4|Q5GMM4_CAPCH 60S ribosomal protein L37a OS=Capsicum chinense PE=4 SV=1 Length = 92
Score = 158 bits (400), Expect = 1e-37 Identities = 76/91 (83%), Positives = 82/91 (90%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH++YFCEFCGK+AVKRKAVGIW CKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSEYFCEFCGKYAVKRKAVGIWGCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYTLNTASAVTVRSTIRRLREQ E Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
>tr|B7FGL8|B7FGL8_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=4 SV=1 Length = 92
Score = 158 bits (400), Expect = 1e-37 Identities = 76/91 (83%), Positives = 82/91 (90%) Frame = +1
Query: 64 MTKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDC 243 MTKRTKKAGIVGKYGTRYGASL++ I SQH+K+FCEFCGK+AVKRKAVGIW CKDC Sbjct: 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKFFCEFCGKYAVKRKAVGIWGCKDC 60
Query: 244 NKIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYTLNTASAVTVRSTIRRLREQ E Sbjct: 61 GKVKAGGAYTLNTASAVTVRSTIRRLREQTE 91
>tr|B6SX68|B6SX68_MAIZE 60S ribosomal protein L37a OS=Zea mays PE=4 SV=1 Length = 95
Score = 158 bits (400), Expect = 1e-37 Identities = 76/90 (84%), Positives = 81/90 (90%) Frame = +1
Query: 67 TKRTKKAGIVGKYGTRYGASLKRPIF*NHGSQHAKYFCEFCGKFAVKRKAVGIWSCKDCN 246 TKRTKKAGIVGKYGTRYGASL++ I SQH+KYFCEFCGKFAVKRKAVGIW CKDC Sbjct: 5 TKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCG 64
Query: 247 KIKAGGAYTLNTASAVTVRSTIRRLREQVE 336 K+KAGGAYT+NTASAVTVRSTIRRLREQ E Sbjct: 65 KVKAGGAYTMNTASAVTVRSTIRRLREQTE 94
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