DK954639 |
Clone id |
TST39A01NGRL0020_P16 |
Library |
TST39 |
Length |
581 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0020_P16. 5' end sequence. |
Accession |
DK954639 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL202Contig1 |
Sequence |
GTGAGGGGCGATCTGGTGCAGGCCTCTCCATCCTCGGCACCATGTTGATTTCTAAGAAGA ATCGAGTGGAAGTTTACAAGTATCTTTTCAAAGAGGGGGTTCTCTATGCCAAAAAAGACT TCAATCTGCCAAAGCATCCAGACATTGATGTTCCAAATCTGCAAGTGATCAAGCTCATGC AGAGCTTCAAGTCTAAGGAATATGTCAAAGAGAATTTTGCTTGGATGCACTACTACTGGT ATTTGACCAATGATGGTATTGAGCACCTTAGAACATATCTCAATTTGCCCTCAGAGATTG TGCCCGCCACACTCAAGAAGTCTGCCAGGCCTCCTGGCAGGCCGATGGGTGGACCTCCCG GTGACCGGCCCCGTGGCCCCCCTCGAGACGGTGACAGGCCAAGGTTTGGTGACAGAGATG GTTATCGTGGTGGCCCTCCAAGGGGTCCAGGTGGTTTTGGTGACAAAGGTGGTGCCCCTG AAGGTTTTCAGCCCTCTTTCAGGAGTGGTGCTGGTGGGCGACCTGGCTTTCGGACGAGGT GGTGGTGGGTTTGGTGCAGGCCAACCCTCTCTTACGGAGTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9AYP4 |
Definition |
sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica |
Align length |
166 |
Score (bit) |
174.0 |
E-value |
4.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954639|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0020_P16, 5' (581 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa s... 174 4e-43 sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis... 172 8e-43 sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis... 166 6e-41 sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis... 160 3e-39 sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera fru... 145 1e-34 sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rube... 144 3e-34 sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicu... 137 4e-32 sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus G... 137 4e-32 sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens G... 137 4e-32 sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=... 137 4e-32 sp|Q07254|RS10_XENLA 40S ribosomal protein S10 OS=Xenopus laevis... 134 4e-31 sp|Q9VWG3|RS10B_DROME 40S ribosomal protein S10b OS=Drosophila m... 132 1e-30 sp|Q90YR4|RS10_ICTPU 40S ribosomal protein S10 OS=Ictalurus punc... 130 6e-30 sp|Q9VB14|RS10A_DROME 40S ribosomal protein S10a OS=Drosophila m... 127 5e-29 sp|Q9NQ39|RS10L_HUMAN Putative 40S ribosomal protein S10-like pr... 126 7e-29 sp|O13614|RS10B_SCHPO 40S ribosomal protein S10-B OS=Schizosacch... 119 1e-26 sp|O14112|RS10A_SCHPO 40S ribosomal protein S10-A OS=Schizosacch... 119 1e-26 sp|O77082|RS10_DICDI 40S ribosomal protein S10 OS=Dictyostelium ... 118 2e-26 sp|Q08745|RS10A_YEAST 40S ribosomal protein S10-A OS=Saccharomyc... 112 1e-24 sp|P46784|RS10B_YEAST 40S ribosomal protein S10-B OS=Saccharomyc... 112 2e-24 sp|P30427|PLEC1_RAT Plectin-1 OS=Rattus norvegicus GN=Plec1 PE=1... 100 9e-21 sp|Q9QXS1|PLEC1_MOUSE Plectin-1 OS=Mus musculus GN=Plec1 PE=1 SV=2 100 9e-21 sp|Q15149|PLEC1_HUMAN Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3 99 2e-20 sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l... 33 0.79 sp|Q8JFN7|ACH91_ONCMY Neuronal acetylcholine receptor subunit al... 33 0.79 sp|P0A0V6|HPN_HELPY Histidine-rich metal-binding polypeptide OS=... 33 1.0 sp|P0A0V7|HPN_HELPJ Histidine-rich metal-binding polypeptide OS=... 33 1.0 sp|Q1KXR1|YCF1_HELAN Putative membrane protein ycf1 OS=Helianthu... 32 2.3 sp|Q497K7|YB028_MOUSE Transmembrane protein ENSP00000343375 homo... 32 2.3 sp|Q71RP1|HPSE_RAT Heparanase OS=Rattus norvegicus GN=Hpse PE=2 ... 32 2.3
>sp|Q9AYP4|RS10_ORYSJ 40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2 Length = 183
Score = 174 bits (440), Expect = 4e-43 Identities = 95/166 (57%), Positives = 103/166 (62%), Gaps = 3/166 (1%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 221 M+I KKNR E+ KYLF+EGVLYAKKD+NL KHP IDVPNLQVIKLMQSFKSKEYV+E F+ Sbjct: 1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFS 60
Query: 222 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKSA---XXXXXXXXXXXXXXXXXXXXXX 392 W +YYWYLTNDGIEHLR YLNLPSEIVPATLKKSA Sbjct: 61 WQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGD 120
Query: 393 XXXXXXXXXXXXXXXXXXXXXXXXXXXAPEGFQPSFRSGAGGRPGF 530 AP FQPSFRS +GGRPGF Sbjct: 121 RPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPSFRS-SGGRPGF 165
>sp|Q9SW09|RS101_ARATH 40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1 Length = 177
Score = 172 bits (437), Expect = 8e-43 Identities = 93/163 (57%), Positives = 103/163 (63%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 221 M+IS+ NR E+ KYLFKEGV +AKKDFNLPKHP IDVPNLQVIKLMQSFKSKEYV+E FA Sbjct: 1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 222 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKSAXXXXXXXXXXXXXXXXXXXXXXXXX 401 WMHYYW+LTN+GIE LRTYLNLPS++VPATLKKSA Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA---KPGGRPFGGPPGDRQRGPPRSD 117
Query: 402 XXXXXXXXXXXXXXXXXXXXXXXXAPEGFQPSFRSGAGGRPGF 530 AP FQPSF+ G GGRPGF Sbjct: 118 GDRPRFGDRDGYRGGPRGGDEKGGAPADFQPSFQ-GGGGRPGF 159
>sp|Q9LTF2|RS103_ARATH 40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2 Length = 179
Score = 166 bits (421), Expect = 6e-41 Identities = 78/95 (82%), Positives = 87/95 (91%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 221 M+IS+ NR E+ KYLFKEGV +AKKDFNL KHP IDVPNLQVIKLMQSFKSKEYV+E FA Sbjct: 1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFA 60
Query: 222 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKSA 326 WMHYYW+LTN+GIE LRTYLNLPS++VPATLKKSA Sbjct: 61 WMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSA 95
>sp|Q9FFS8|RS102_ARATH 40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1 Length = 180
Score = 160 bits (406), Expect = 3e-39 Identities = 77/94 (81%), Positives = 87/94 (92%), Gaps = 1/94 (1%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDID-VPNLQVIKLMQSFKSKEYVKENF 218 M+IS+ NR E+ KYLFKEGVL+AKKDFNLP+HP I+ VPNLQVIKLMQSFKSKEYV+E F Sbjct: 1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60
Query: 219 AWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKK 320 AWMHYYW+LTN+GI+ LRTYLNLPSEIVPATLKK Sbjct: 61 AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKK 94
>sp|Q962R9|RS10_SPOFR 40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1 Length = 158
Score = 145 bits (367), Expect = 1e-34 Identities = 66/95 (69%), Positives = 83/95 (87%), Gaps = 1/95 (1%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDID-VPNLQVIKLMQSFKSKEYVKENF 218 ML+ K+NRV +Y+YLFKEGV+ AKKD++ PKHPD++ +PNLQVIK MQS KS+ YVKE F Sbjct: 1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQF 60
Query: 219 AWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 323 AW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S Sbjct: 61 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRS 95
>sp|O77302|RS10_LUMRU 40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1 Length = 156
Score = 144 bits (363), Expect = 3e-34 Identities = 66/93 (70%), Positives = 79/93 (84%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDIDVPNLQVIKLMQSFKSKEYVKENFA 221 ML+SKKNRV +Y+YLFKEGVL AKKDF+LPKH +IDVPNL VI+ MQS S+ YVKE F Sbjct: 1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFC 60
Query: 222 WMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKK 320 W HYYWYL N+GI++LR +L+LP EIVPATLK+ Sbjct: 61 WRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKR 93
>sp|P63326|RS10_RAT 40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1 Length = 165
Score = 137 bits (345), Expect = 4e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 212 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 213 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 323 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
>sp|P63325|RS10_MOUSE 40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1 Length = 165
Score = 137 bits (345), Expect = 4e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 212 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 213 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 323 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
>sp|P46783|RS10_HUMAN 40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1 Length = 165
Score = 137 bits (345), Expect = 4e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 212 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 213 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 323 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
>sp|Q3T0F4|RS10_BOVIN 40S ribosomal protein S10 OS=Bos taurus GN=RPS10 PE=2 SV=1 Length = 165
Score = 137 bits (345), Expect = 4e-32 Identities = 62/97 (63%), Positives = 81/97 (83%), Gaps = 3/97 (3%) Frame = +3
Query: 42 MLISKKNRVEVYKYLFKEGVLYAKKDFNLPKHPDI---DVPNLQVIKLMQSFKSKEYVKE 212 ML+ KKNR+ +Y+ LFKEGV+ AKKD ++PKHP++ +VPNL V+K MQS KS+ YVKE Sbjct: 1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 60
Query: 213 NFAWMHYYWYLTNDGIEHLRTYLNLPSEIVPATLKKS 323 FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S Sbjct: 61 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9U1Y5 |
Definition |
tr|A9U1Y5|A9U1Y5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
95 |
Score (bit) |
190.0 |
E-value |
4.0e-47 |
Report |
|