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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954733
Clone id TST39A01NGRL0021_D16
Library
Length 559
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_D16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGCATACATATCTTATCTCTCTCATTTTTTGTGTGTACAGCTCGTAACCTTATCTTCTCC
GTCTCTTCTCTACACTTCTCCATCCCCCTGAAGCCATGAGCATCCGTGACTCTGTCCGCT
TCCGTGTCGACTCCACAAATGGTATCAGAGCACTAGCTTTGTCTTGGGTAAAAAGCTCCT
GGAAGGAAGAGTTTGAGCAGACAGGAAACAAAGGGGGAGGCTCTGAGAGAGTTGGAAGAA
CAACCTTGTTGATCTCACTCTCTGCGGGGTTGTCTTATTTCAGCTCCGACGGCTGTTGGT
GGCACTACCACAACAATGCCCATGTAAGGGCGGTTCAACCATCAATGCAGTGCCTAAGAG
GGCAGCACTACCGACAAACAAGAGAAGGCCGGCTAGGCTCAGGAGGCTGTCAGGGGCTCT
GGGAGTAGACCAAGGGCACGATTGCAGGAGAAGGCTCGTTCATGTAGGAGAAGGCAACAA
CAACACACAAGGAGTGGGGGTTTTGAGAGCAACTGCAGAGGGGCGCCAGGCCTTGCACAT
GGCAGCTTACATTAAGCCT
■■Homology search results ■■ -
sp_hit_id Q80V70
Definition sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like domains 6 OS=Mus musculus
Align length 42
Score (bit) 33.5
E-value 0.73
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954733|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_D16, 5'
         (559 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like doma...    33   0.73 
sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=C...    33   1.2  
sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domain...    32   1.6  
sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus m...    32   2.7  
sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis glossi...    31   4.7  
sp|P19091|ANDR_MOUSE Androgen receptor OS=Mus musculus GN=Ar PE=...    30   6.2  
sp|P0A4R4|URED_BORPE Urease accessory protein ureD OS=Bordetella...    30   8.0  
sp|P0A4R6|URED_BORPA Urease accessory protein ureD OS=Bordetella...    30   8.0  
sp|P0A4R5|URED_BORBR Urease accessory protein ureD OS=Bordetella...    30   8.0  
sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=...    30   8.1  
sp|O75095|MEGF6_HUMAN Multiple epidermal growth factor-like doma...    30   8.1  

>sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like domains
           6 OS=Mus musculus GN=Megf6 PE=2 SV=3
          Length = 1572

 Score = 33.5 bits (75), Expect = 0.73
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 427 RPRARLQEKARSCRRRQQQHTRSGGFESNCRGAPGLAHGSLH 552
           RP+ +LQE  R C RR      +GG    C+   GLAH   H
Sbjct: 232 RPQYQLQEDGRRCVRRSPCADGNGGCMHTCQELRGLAHCGCH 273


>sp|P39881|CUX1_CANFA Homeobox protein cut-like 1 (Fragment) OS=Canis
            familiaris GN=CUX1 PE=2 SV=1
          Length = 975

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = +1

Query: 406  AVRGSGSRPRARLQEKARSCRRRQQQHTRSGG---FESNCRGAPGLAHGSLH 552
            A RG   RP AR + + R  RRR+++H R GG        RG P  A    H
Sbjct: 857  AARGPSRRPGARAKPRRR--RRRRRRHARGGGRRYLSRPARGGPCRARDGAH 906


>sp|O88281|MEGF6_RAT Multiple epidermal growth factor-like domains 6
           OS=Rattus norvegicus GN=Megf6 PE=2 SV=1
          Length = 1574

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 427 RPRARLQEKARSCRRRQQQHTRSGGFESNCRGAPGLAHGSLH 552
           RP+ +LQE  R C RR      +GG    C+   GLAH   H
Sbjct: 233 RPQYQLQEDGRRCVRRSPCAEGNGGCMHICQELRGLAHCGCH 274


>sp|Q924N4|S12A6_MOUSE Solute carrier family 12 member 6 OS=Mus
           musculus GN=Slc12a6 PE=1 SV=1
          Length = 1150

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
 Frame = +3

Query: 78  LHPPEAMSIRDSVRFRV------------DSTNGIRALALSWVKSSWKEEFEQTGNKGGG 221
           +HPPEA +   SVRF V            D++  + + + S V+ S +E   +T      
Sbjct: 1   MHPPEATTKMSSVRFMVTPTKIDDIPGLSDTSPDLSSRSSSRVRFSSRESVPETSRSEPM 60

Query: 222 SERVGRTTLLISLSAGLSYFSSDGCWWHYHNNAHVRAVQPSMQCLRGQHYRQTREG 389
           SE  G TT L +++      SSD       +N       PS   + G+H +   +G
Sbjct: 61  SELSGATTSLATVALDP---SSDRT-----SNPQDVTEDPSQNSITGEHSQLLDDG 108


>sp|Q2NQN8|RL18_SODGM 50S ribosomal protein L18 OS=Sodalis
           glossinidius (strain morsitans) GN=rplR PE=3 SV=1
          Length = 117

 Score = 30.8 bits (68), Expect = 4.7
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
 Frame = +3

Query: 123 RVDSTNGIRAL-ALSWVKSSWKEEFEQTGNKGGGSERVGRTTLLISLSAGLSYFSSDGCW 299
           +V + NG   L A S V+ +  E+ + TGNK   +  VG+T  + +L  G+   S D   
Sbjct: 38  QVIAPNGSEVLVAASTVEKAIAEQLKGTGNKDAAAA-VGKTIAVRALEKGIKDVSFDRSG 96

Query: 300 WHYHNNAHVRA 332
           + YH      A
Sbjct: 97  FQYHGRVQALA 107


>sp|P19091|ANDR_MOUSE Androgen receptor OS=Mus musculus GN=Ar PE=1
           SV=1
          Length = 899

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 11/55 (20%)
 Frame = +1

Query: 400 QEAVRGSGSR---------PRARLQEKARSC--RRRQQQHTRSGGFESNCRGAPG 531
           +EA++  G R         P A LQ++  +   RRR+QQHT  G  +++ RG  G
Sbjct: 31  REAIQNPGPRHPEAANIAPPGACLQQRQETSPRRRRRQQHTEDGSPQAHIRGPTG 85


>sp|P0A4R4|URED_BORPE Urease accessory protein ureD OS=Bordetella
           pertussis GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 75  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKE 188
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQ 95


>sp|P0A4R6|URED_BORPA Urease accessory protein ureD OS=Bordetella
           parapertussis GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 75  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKE 188
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQ 95


>sp|P0A4R5|URED_BORBR Urease accessory protein ureD OS=Bordetella
           bronchiseptica GN=ureD PE=3 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 75  LLHPPEAMSIRDSVRFRVDSTNGIRAL-----ALSWVKSSWKE 188
           +LHPP  ++  D++  RVD   G RA      A  W KS+ ++
Sbjct: 53  ILHPPSGIAGGDALEIRVDVAGGARAALTTPGATRWYKSNGRQ 95


>sp|Q76I79|SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus
           musculus GN=Ssh1 PE=1 SV=1
          Length = 1042

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 29/95 (30%), Positives = 41/95 (43%)
 Frame = +2

Query: 182 EGRV*ADRKQRGRL*ESWKNNLVDLTLCGVVLFQLRRLLVALPQQCPCKGGSTINAVPKR 361
           EG + A +++  +L   W+    D T+     F    L  AL  Q PC   +T   +P R
Sbjct: 444 EGILDASKQRHNKL---WRQQPTDDTIAEPSEFLPETLDGALDAQLPCLDDTTHPGLP-R 499

Query: 362 AALPTNKRRPARLRRLSGALGVDQGHDCRRRLVHV 466
           +  P     P   RRLS  L +   HD    LVH+
Sbjct: 500 SLAPGGPALPCCFRRLSDPLLLPH-HDETGGLVHL 533
tr_hit_id B5YLR2
Definition tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335
Align length 65
Score (bit) 37.4
E-value 0.55
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954733|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_D16, 5'
         (559 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira pseudo...    37   0.55 
tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein OS=Botry...    34   4.7  
tr|B1ASH4|B1ASH4_MOUSE Multiple EGF-like-domains 6 (Fragment) OS...    33   8.1  

>tr|B5YLR2|B5YLR2_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPS_10869 PE=4 SV=1
          Length = 414

 Score = 37.4 bits (85), Expect = 0.55
 Identities = 25/65 (38%), Positives = 32/65 (49%)
 Frame = +3

Query: 69  STLLHPPEAMSIRDSVRFRVDSTNGIRALALSWVKSSWKEEFEQTGNKGGGSERVGRTTL 248
           ST  HPP     + S+R+R++S   + A      K  WK +FE   NK GGS   G T L
Sbjct: 2   STKSHPPSVSLGKPSLRYRLESYYSLIAPDAIADKEDWKRKFEIIYNKFGGSVE-GETRL 60

Query: 249 LISLS 263
              LS
Sbjct: 61  ANKLS 65


>tr|A6SS60|A6SS60_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_15625
           PE=4 SV=1
          Length = 371

 Score = 34.3 bits (77), Expect = 4.7
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
 Frame = -1

Query: 268 PAESEINKVVLPT----LSEPPP---LFPVCSNSSFQELFTQDKASALIPFVESTRK 119
           P +   NK V+P     L EPPP   LFP  ++SSF +   ++  +AL P +  TR+
Sbjct: 148 PKKQRSNKQVVPPIIIGLHEPPPQAALFPPIASSSFHDSHGRNTLNALAPKITETRE 204


>tr|B1ASH4|B1ASH4_MOUSE Multiple EGF-like-domains 6 (Fragment)
           OS=Mus musculus GN=Megf6 PE=4 SV=1
          Length = 1192

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 427 RPRARLQEKARSCRRRQQQHTRSGGFESNCRGAPGLAHGSLH 552
           RP+ +LQE  R C RR      +GG    C+   GLAH   H
Sbjct: 124 RPQYQLQEDGRRCVRRSPCADGNGGCMHTCQELRGLAHCGCH 165