DK954736 |
Clone id |
TST39A01NGRL0021_D19 |
Library |
TST39 |
Length |
585 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_D19. 5' end sequence. |
Accession |
DK954736 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL106Contig1 |
Sequence |
GCAGGAGGGCGTCGATATGAGCCCGGCTGCCGTGGATATGAGCAGCAGCGCCATGGATGC TCTCTCCTGTGCGAGCCTCTCTGTGCGCCAGTCATCCCTCCGGCGCTGGTCCTCCTCTCC TCTGTTCGCCAATCGCCTGGCTATGCCCAGCTCTGAGCTTCCTTTGTGCCGCTCTACCTC AGGTGCTTCGTCGTCTCCTTCAAAGCCTCTCACTATAGCTAACTCTTACAGCCCCAGGCG GCCTTCTGATAGAAGCTTCAGAAGGGACCAGCCCAACGTGTACGAGCTGGACTTGGAGGA GCAGGTGAGCCAGATTGATATGGATCCCAACAAGATGCTACAGCCTGGAGACCCCAATTC TATGCAGGCCATTATTAAGGATGTCATGCCTGTAGGTTACTTCGTCTCTCTGCCCACAGG CAGAGATGGGTATCTTCCAGCAGATGACTTGGGCTTTACAGGTGGGCTTGCTATTCTGCG CAAGCTTTTCAAGGAGGGTCAAGAGATTACTGTGCGCATTGTTTGTCGCGGTGGGGCAGG AAGGGAGATTGTTTCTGTGAAAAAGCCTGAGTTTGCCCCTCCCAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6K8Z4 |
Definition |
sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp. japonica |
Align length |
54 |
Score (bit) |
33.5 |
E-value |
0.77 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PEK9 |
Definition |
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
69 |
Score (bit) |
37.4 |
E-value |
0.59 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954736|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_D19, 5' (570 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom... 37 0.59 tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas... 37 0.77 tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta Mad-... 37 0.78 tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-... 37 0.78 tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th... 37 1.00 tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter... 37 1.00 tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.0 tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.0 tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.0 tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta Mad-... 37 1.0 tr|B8P873|B8P873_9APHY Predicted protein OS=Postia placenta Mad-... 36 1.3 tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte... 36 1.7 tr|B8PLX5|B8PLX5_9APHY Predicted protein OS=Postia placenta Mad-... 36 1.7 tr|B8PLJ0|B8PLJ0_9APHY Predicted protein OS=Postia placenta Mad-... 36 1.7 tr|B8PJD5|B8PJD5_9APHY Predicted protein OS=Postia placenta Mad-... 36 1.7 tr|B8P9K3|B8P9K3_9APHY Predicted protein OS=Postia placenta Mad-... 36 1.7 tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermoto... 35 2.2 tr|B8PKA8|B8PKA8_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.3 tr|B8PJB7|B8PJB7_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.3 tr|B8P4Q7|B8P4Q7_9APHY Predicted protein OS=Postia placenta Mad-... 35 2.3 tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen... 35 2.9 tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reduct... 35 2.9 tr|B8P242|B8P242_9APHY Predicted protein OS=Postia placenta Mad-... 35 3.0 tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo... 35 3.8 tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct... 35 3.8 tr|Q08Q81|Q08Q81_STIAU Putative uncharacterized protein OS=Stigm... 35 3.8 tr|B3DUV3|B3DUV3_METI4 Ribosomal protein S1 OS=Methylacidiphilum... 34 5.0 tr|B8PMD6|B8PMD6_9APHY Predicted protein OS=Postia placenta Mad-... 34 5.0 tr|Q8KFN4|Q8KFN4_CHLTE Ribosomal protein S1 OS=Chlorobium tepidu... 34 6.5 tr|Q1D6H1|Q1D6H1_MYXXD Ribosomal protein S1 family protein OS=My... 34 6.5
>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001 PE=4 SV=1 Length = 553
Score = 37.4 bits (85), Expect = 0.59 Identities = 21/69 (30%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +2
Query: 362 MQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTG-GLAILRKLFKEGQEITVRIVCRGGA 538 ++ +K++ G F+SLP G +G+LP + G G + + GQE++VR++ R Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324
Query: 539 GREIVSVKK 565 G+ +++KK Sbjct: 325 GQVTLTMKK 333
>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1 Length = 715
Score = 37.0 bits (84), Expect = 0.77 Identities = 17/50 (34%), Positives = 31/50 (62%) Frame = +2
Query: 374 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 523 +K +MP G FV + G+DG L ++ +T L + +FKEG ++ V+++ Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLL 684
>tr|B8PN02|B8PN02_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_104026 PE=4 SV=1 Length = 355
Score = 37.0 bits (84), Expect = 0.78 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -1
Query: 195 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 25 ++EA VE ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 101 EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARITAAE 157
Query: 24 GLISTPS 4 GL+S P+ Sbjct: 158 GLLSDPA 164
>tr|B8P3D7|B8P3D7_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_97308 PE=4 SV=1 Length = 1213
Score = 37.0 bits (84), Expect = 0.78 Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -1
Query: 195 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 25 ++EA VE ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 931 EEEARRVEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 987
Query: 24 GLISTPS 4 GL+S P+ Sbjct: 988 GLLSDPA 994
>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4 SV=1 Length = 616
Score = 36.6 bits (83), Expect = 1.00 Identities = 17/50 (34%), Positives = 29/50 (58%) Frame = +2
Query: 374 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 523 I ++ G V LP+G DG++PA L GG+ + FK G E+ ++++ Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVI 534
>tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=CHAB381_0481 PE=4 SV=1 Length = 557
Score = 36.6 bits (83), Expect = 1.00 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%) Frame = +2
Query: 338 LQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVR 517 L+ GD ++Q + ++ P G FV L +G+L ++ + + + EGQEI V Sbjct: 284 LEVGD--TIQVTVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDFISEGQEINVE 341
Query: 518 IVCRGGAGREI-VSVK 562 +V G R + VS+K Sbjct: 342 VVEINGDDRRLRVSLK 357
>tr|B8PMW1|B8PMW1_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_96931 PE=4 SV=1 Length = 332
Score = 36.6 bits (83), Expect = 1.0 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -1
Query: 195 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 25 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 98 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 154
Query: 24 GLISTPS 4 GL+S P+ Sbjct: 155 GLLSDPA 161
>tr|B8PM62|B8PM62_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_98462 PE=4 SV=1 Length = 249
Score = 36.6 bits (83), Expect = 1.0 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -1
Query: 195 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 25 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 115 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 171
Query: 24 GLISTPS 4 GL+S P+ Sbjct: 172 GLLSDPA 178
>tr|B8PIT6|B8PIT6_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_97913 PE=4 SV=1 Length = 362
Score = 36.6 bits (83), Expect = 1.0 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -1
Query: 195 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 25 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 108 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELARIAAAE 164
Query: 24 GLISTPS 4 GL+S P+ Sbjct: 165 GLLSDPA 171
>tr|B8P8M1|B8P8M1_9APHY Predicted protein OS=Postia placenta Mad-698-R GN=POSPLDRAFT_106563 PE=4 SV=1 Length = 374
Score = 36.6 bits (83), Expect = 1.0 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Frame = -1
Query: 195 DDEAPEVERHKGSSELGIARRLAN---RGEEDQRRRDDWRTERLAQERASMALLLISTAA 25 ++EA +E ++ RRL + R EE++RR +D ER AQE A L I+ A Sbjct: 107 EEEARRIEEAAKRAKAAEERRLEDERRRKEEEERRLED---ERRAQEAADEELAQIAAAE 163
Query: 24 GLISTPS 4 GL+S P+ Sbjct: 164 GLLSDPA 170
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