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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954756
Clone id TST39A01NGRL0021_E16
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_E16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATCTGACCAATTTGAATCAAGACAGGTCCAGCCCTTGGTGTGCACATGCAGGGCCTCCTT
CTCTGAAAAAGATTTATGGGTGTTCCCCTTTCCAGTCTAAGTTCAAAAAGCTTGCTCCTA
TGGATGACCATTTAGTAAGTGGAGTCTTTGCAAAAGATGAGGAGGAAGCTGCGGTTCTTT
TGATGCATCTCTCTTGTGGCCTTGTGTACTGAGCCCAATGGCATGCTTAAGTCTTTGAGT
AGCACCATAACTTGAATGTGGAGCTTAAGCCAAGTGCATTGTATAATGAAATCAGTGTGC
AGGGGATGTTAGATGTAGTTATCTCGAATTAATGGAAGCAGGCATGCTTTCTGTTAGTCG
AGGCTCCTTAGAATCTGGTTGCTCAGGTGTAAAGTTAGCAGAGTAGGCCTTTGTGCGACC
AAGATCTCTGTCATTGTTCTGTTGTTGCTACGATGGTGCTCTGCAGGGTAGGGCTTTGTA
CTCTGGCCACTACCAAGTGTTGTACTCTAGGGTTCTTTTACTCTCGCAGACATACAAGCT
AGTATCTTCTTGCTTC
■■Homology search results ■■ -
sp_hit_id Q6NXE6
Definition sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo sapiens
Align length 65
Score (bit) 34.7
E-value 0.32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954756|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_E16, 5'
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=H...    35   0.32 
sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=M...    33   0.93 
sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsi...    32   2.7  
sp|Q9SZI6|GAT20_ARATH Putative GATA transcription factor 20 OS=A...    31   4.6  
sp|Q1LV17|I2BP1_DANRE Interferon regulatory factor 2-binding pro...    30   6.0  

>sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo
           sapiens GN=ARMC6 PE=1 SV=2
          Length = 501

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -3

Query: 350 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 171
           KA +LPL+      H  HTD + +  W    ++VM    D+ +P G  H   + + Q+N+
Sbjct: 218 KAGVLPLLTGAITHHGHHTDVVREACWA---LRVMTFDDDIRVPFGHAHNHAKMIVQENK 274

Query: 170 SFLLI 156
              ++
Sbjct: 275 GLKVL 279


>sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=Mus
           musculus GN=Armc6 PE=2 SV=1
          Length = 468

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 350 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 171
           KA +LPL+      H  H D + +  W    ++VM    D+ +P G  H+  + + Q+N+
Sbjct: 193 KAGVLPLLTAAITQHGQHADVVREACWA---LRVMTFDDDIRVPFGHAHEHAKMIVQENK 249

Query: 170 SFLLI 156
              ++
Sbjct: 250 GLKVL 254


>sp|Q5HZ36|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis
           thaliana GN=At5g56860 PE=2 SV=2
          Length = 398

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 15/22 (68%), Positives = 19/22 (86%)
 Frame = +3

Query: 144 VFAKDEEEAAVLLMHLSCGLVY 209
           VF +DE+EAAVLLM LS G+V+
Sbjct: 376 VFPQDEKEAAVLLMALSYGMVH 397


>sp|Q9SZI6|GAT20_ARATH Putative GATA transcription factor 20
           OS=Arabidopsis thaliana GN=At4g26150 PE=2 SV=1
          Length = 352

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 14/22 (63%), Positives = 19/22 (86%)
 Frame = +3

Query: 144 VFAKDEEEAAVLLMHLSCGLVY 209
           VF +DE+EAA+LLM LS G+V+
Sbjct: 330 VFPQDEKEAAILLMALSHGMVH 351


>sp|Q1LV17|I2BP1_DANRE Interferon regulatory factor 2-binding
           protein 1 OS=Danio rerio GN=irf2bp1 PE=2 SV=1
          Length = 605

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +3

Query: 18  QDRSSPWCAHAGP--PSLKKIYGCSPFQSKFKKLAPMDDHLVSGVFAKD 158
           ++R+  W     P   +L  + GC+PF  +FKK    D  LV  VFA D
Sbjct: 223 RNRADDWAGRPKPMRDALHTLSGCTPFNVRFKK----DHGLVGRVFAFD 267
tr_hit_id B8LRB8
Definition tr|B8LRB8|B8LRB8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 43
Score (bit) 41.6
E-value 0.029
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954756|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_E16, 5'
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LRB8|B8LRB8_PICSI Putative uncharacterized protein OS=Picea...    42   0.029
tr|A5B2U8|A5B2U8_VITVI Putative uncharacterized protein OS=Vitis...    37   0.54 
tr|A9RDP7|A9RDP7_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.70 
tr|A9T5B9|A9T5B9_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.6  
tr|A9SUP4|A9SUP4_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.6  
tr|Q68CW5|Q68CW5_HUMAN Putative uncharacterized protein DKFZp762...    35   3.5  
tr|B4E1N1|B4E1N1_HUMAN cDNA FLJ50945, highly similar to Armadill...    35   3.5  
tr|B6WX64|B6WX64_9DELT Putative uncharacterized protein OS=Desul...    35   3.6  
tr|B2RYL4|B2RYL4_RAT Armc6 protein (RCG38798, isoform CRA_a) OS=...    34   4.6  
tr|A7LVZ7|A7LVZ7_BACOV Putative uncharacterized protein OS=Bacte...    34   4.6  
tr|A8XN65|A8XN65_CAEBR Putative uncharacterized protein OS=Caeno...    34   4.6  
tr|A4SMA2|A4SMA2_AERS4 Putative uncharacterized protein OS=Aerom...    34   6.0  
tr|A9SUP3|A9SUP3_PHYPA Predicted protein OS=Physcomitrella paten...    34   6.0  
tr|A6ETL8|A6ETL8_9BACT Aminopeptidase OS=unidentified eubacteriu...    33   7.8  

>tr|B8LRB8|B8LRB8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 380

 Score = 41.6 bits (96), Expect = 0.029
 Identities = 24/43 (55%), Positives = 27/43 (62%), Gaps = 8/43 (18%)
 Frame = +3

Query: 105 KKLAPMDDHLVSG--------VFAKDEEEAAVLLMHLSCGLVY 209
           KK  P   HL +         VFA+DEEEAAVLLM LSCGLV+
Sbjct: 337 KKFVPSPIHLETNSSHSAFQRVFAQDEEEAAVLLMALSCGLVH 379


>tr|A5B2U8|A5B2U8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032017 PE=4 SV=1
          Length = 211

 Score = 37.4 bits (85), Expect = 0.54
 Identities = 17/22 (77%), Positives = 19/22 (86%)
 Frame = +3

Query: 144 VFAKDEEEAAVLLMHLSCGLVY 209
           VF +DEEEAA+LLM LSC LVY
Sbjct: 189 VFPRDEEEAAILLMALSCDLVY 210


>tr|A9RDP7|A9RDP7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_64713 PE=4 SV=1
          Length = 558

 Score = 37.0 bits (84), Expect = 0.70
 Identities = 23/50 (46%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
 Frame = +3

Query: 60  SLKKIYGCSPF-QSKFKKLAPMDDHLVSGVFAKDEEEAAVLLMHLSCGLV 206
           +L++ +  SP  +S+ K+L     +L  G F+ DEEE AVLLM LSCG+V
Sbjct: 512 TLQQDFRASPVSRSQVKEL-----NLQMGSFSSDEEEGAVLLMALSCGMV 556


>tr|A9T5B9|A9T5B9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_140427 PE=4 SV=1
          Length = 202

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 22/59 (37%), Positives = 33/59 (55%)
 Frame = +3

Query: 30  SPWCAHAGPPSLKKIYGCSPFQSKFKKLAPMDDHLVSGVFAKDEEEAAVLLMHLSCGLV 206
           SP  A +   +L + +  SP      ++   + ++  G F+ DEEE AVLLM LSCG+V
Sbjct: 146 SPLFASSPKSTLHRDFRASPVV----RIQDKELNMHVGSFSSDEEEGAVLLMALSCGMV 200


>tr|A9SUP4|A9SUP4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166660 PE=4 SV=1
          Length = 417

 Score = 35.8 bits (81), Expect = 1.6
 Identities = 27/68 (39%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 9   NLNQDRSSPW--CAHAGPPSLKKIYGCSPFQSKFKKLAPMDDHLVSGVFAKDEEEAAVLL 182
           NL  D   PW  C   G P  K+  G         KL     ++  G ++ DEEE AVLL
Sbjct: 355 NLMFDSCVPWQPCRLVGSP--KRSPGSRLASDHENKL-----NMQFGSYSSDEEEGAVLL 407

Query: 183 MHLSCGLV 206
           M LSCG+V
Sbjct: 408 MALSCGVV 415


>tr|Q68CW5|Q68CW5_HUMAN Putative uncharacterized protein
           DKFZp762A1314 (Fragment) OS=Homo sapiens
           GN=DKFZp762A1314 PE=2 SV=1
          Length = 443

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -3

Query: 350 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 171
           KA +LPL+      H  HTD + +  W    ++VM    D+ +P G  H   + + Q+N+
Sbjct: 106 KAGVLPLLTGAITHHGHHTDVVREACWA---LRVMTFDDDIRVPFGHAHNHAKMIVQENK 162

Query: 170 SFLLI 156
              ++
Sbjct: 163 GLKVL 167


>tr|B4E1N1|B4E1N1_HUMAN cDNA FLJ50945, highly similar to Armadillo
           repeat-containing protein 6 OS=Homo sapiens PE=2 SV=1
          Length = 408

 Score = 34.7 bits (78), Expect = 3.5
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -3

Query: 350 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 171
           KA +LPL+      H  HTD + +  W    ++VM    D+ +P G  H   + + Q+N+
Sbjct: 125 KAGVLPLLTGAITHHGHHTDVVREACWA---LRVMTFDDDIRVPFGHAHNHAKMIVQENK 181

Query: 170 SFLLI 156
              ++
Sbjct: 182 GLKVL 186


>tr|B6WX64|B6WX64_9DELT Putative uncharacterized protein
           OS=Desulfovibrio piger ATCC 29098 GN=DESPIG_02690 PE=4
           SV=1
          Length = 474

 Score = 34.7 bits (78), Expect = 3.6
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
 Frame = -1

Query: 310 NIPCTLISLYNALGLSSTFKLWCYSKT*ACHW------AQYTRPQERCIKRTAASSSSFA 149
           N+PC  + +Y  LGL     + C   T  C+W      A Y R + RC K        F 
Sbjct: 175 NVPCNYVLIYGKLGLPQLGAVGCGVATALCYWFMGLTLALYARREARCRK----LGPLFL 230

Query: 148 KTPLTKWSSIGASFLNLDW 92
              L + +  G     +DW
Sbjct: 231 PLLLPRTAGEGVEARRVDW 249


>tr|B2RYL4|B2RYL4_RAT Armc6 protein (RCG38798, isoform CRA_a)
           OS=Rattus norvegicus GN=Armc6 PE=2 SV=1
          Length = 468

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 18/65 (27%), Positives = 32/65 (49%)
 Frame = -3

Query: 350 KACLLPLIRDNYI*HPLHTDFIIQCTWLKLHIQVMVLLKDLSMPLGSVHKATREMHQKNR 171
           KA +LPL+      H  H D + +  W    ++VM    D+ +P G  H+  + + Q+NR
Sbjct: 193 KAGVLPLLTAAITQHGQHADVVREACWA---LRVMTFDDDIRVPFGHAHEHAKMIVQENR 249

Query: 170 SFLLI 156
              ++
Sbjct: 250 GLKVL 254


>tr|A7LVZ7|A7LVZ7_BACOV Putative uncharacterized protein
            OS=Bacteroides ovatus ATCC 8483 GN=BACOVA_01998 PE=3 SV=1
          Length = 1052

 Score = 34.3 bits (77), Expect = 4.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 447  QQQNNDRDLGRTKAYSANFTPEQPDSKEPRLTES 346
            +  N  RDL +  +Y+  +TPE P+S  PR T+S
Sbjct: 926  ENSNKTRDLNQYASYADRWTPENPESNIPRATDS 959