DK954779 |
Clone id |
TST39A01NGRL0021_F17 |
Library |
TST39 |
Length |
725 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_F17. 5' end sequence. |
Accession |
DK954779 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL98Contig1 |
Sequence |
CTACAAAAAAGTTGGCCAGTGCAGTGGAGAGCAGATCTGTGTGCTCAAGCAGCCATGGCG TGAGCAGACGGAACGCGCTTTCCTTAAGCAGCCGAAGGTCTTTCTCTGCGGCAAAACTTC TGGAAAAGGAAGGGCTCCTGGCAAGCGAGGAAATCGATTCTATAAGAACATTGGTTTGGG GTTTAAGACTGGCCGTCAATCTACAGCATCGACATACATTGACAAGAAGTGCCCTTTTAC GGGCAACGTTTCTATCCGAGGGCGCATTTTGACTGGGACTGTTAACTGCGCAAAAATGAC GAGGACAATAACTGTCAGGAGGGACTACTTGCATTTCGTGAAGAAATATCAAAGGTATGA GAAGAGGCATTCGAATTTGTCTGCCCACGTGTCTCCTTGCTTCCGTGTGAAAGAGGGGGA CAAGGTTATTATCGGGCAGTGCCGGCCTCTTTCAAAGACTGTAAGATTCAACGTCTTGAA GGTCTTTCCTATGGGAGCCGCAGAGGGTGGCAAGAAGGCATTCACTGCAATGTAGTGTAC CGTAGTTTTCCATCGAACCTAATTTTTGTCTAAATTTCATGGGGACCTTGGGACTCCTTG TGCGAAGGTCACTATTTTTGTGAAGCTAAAGGTTCACTGTCCGCTTCCCAAGAGCTGAAG TTTTTTCCAACGGCAACATTTTTTACATGGTTTTTTTGGTTTGAAAAAAAAAAAAAAAAA AAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O65569 |
Definition |
sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS=Arabidopsis thaliana |
Align length |
157 |
Score (bit) |
255.0 |
E-value |
1.0e-67 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S6F7 |
Definition |
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
158 |
Score (bit) |
265.0 |
E-value |
2.0e-69 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954779|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_F17, 5' (687 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 265 2e-69 tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 265 2e-69 tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 263 8e-69 tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 262 1e-68 tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 260 5e-68 tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 259 9e-68 tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 259 1e-67 tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 259 1e-67 tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 257 4e-67 tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 255 2e-66 tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 253 1e-65 tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 253 1e-65 tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 253 1e-65 tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 253 1e-65 tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 250 5e-65 tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 249 9e-65 tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 249 1e-64 tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 249 1e-64 tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 246 1e-63 tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 246 1e-63 tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 246 1e-63 tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 245 2e-63 tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 245 2e-63 tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 244 3e-63 tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 239 1e-61 tr|A4RYN3|A4RYN3_OSTLU Ribosomal protein S11, component of cytos... 219 1e-55 tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 217 6e-55 tr|A3BQN0|A3BQN0_ORYSJ Putative uncharacterized protein OS=Oryza... 213 9e-54 tr|Q209Q5|Q209Q5_9CHLO 40S ribosomal protein S11 OS=Chlamydomona... 211 3e-53 tr|Q7SFZ2|Q7SFZ2_NEUCR Putative uncharacterized protein OS=Neuro... 204 4e-51
>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1 Length = 160
Score = 265 bits (678), Expect = 2e-69 Identities = 128/158 (81%), Positives = 142/158 (89%), Gaps = 1/158 (0%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTE++FLKQPKVFL K S KG+A GK G RF+KN+GLGFKT R++ TYIDKKCPFT Sbjct: 3 EQTEKSFLKQPKVFLSTKASSKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 G+VSIRGRILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGD Sbjct: 63 GDVSIRGRILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 516 KVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 123 KVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1 Length = 160
Score = 265 bits (678), Expect = 2e-69 Identities = 128/158 (81%), Positives = 142/158 (89%), Gaps = 1/158 (0%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTE++FLKQPKVFL K S KG+A GK G RF+KN+GLGFKT R++ TYIDKKCPFT Sbjct: 3 EQTEKSFLKQPKVFLSTKASAKGKAAGKAGTRFWKNVGLGFKTPREAIEGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 G+VSIRGRILTGTVNC KMTRTIT+RRDYLHFV+KYQRYEKRHSNL+AHVSP FRVKEGD Sbjct: 63 GDVSIRGRILTGTVNCTKMTRTITIRRDYLHFVRKYQRYEKRHSNLAAHVSPAFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 516 KVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 123 KVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 159
Score = 263 bits (672), Expect = 8e-69 Identities = 125/157 (79%), Positives = 138/157 (87%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTERAFLKQPKVFLC K SGKG+ PGK GNRF+KNIGLGFKT R++ TYIDKKCPFT Sbjct: 3 EQTERAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 GNVSIRGRIL GT + AKM RTI VRR+YLH+V+KYQRYEKRHSN++AH+SPCFRVKEGD Sbjct: 63 GNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVRKYQRYEKRHSNIAAHISPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 516 VIIGQCRPLSKTVRFNVLKV P G+ GGKKAF A+ Sbjct: 123 HVIIGQCRPLSKTVRFNVLKVIPAGSKGGGKKAFAAV 159
>tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 262 bits (670), Expect = 1e-68 Identities = 126/158 (79%), Positives = 139/158 (87%), Gaps = 1/158 (0%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTE+AFLKQPKVFLC K SGKG+ PGK GNRF+K++GLGFKT R++T TYIDKKCPFT Sbjct: 3 EQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSVGLGFKTPREATEGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 GNVSIRGRIL GT + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD Sbjct: 63 GNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 123 HVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 260 bits (665), Expect = 5e-68 Identities = 125/158 (79%), Positives = 138/158 (87%), Gaps = 1/158 (0%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTE+AFLKQPKVFLC K SGKG+ PGK GNRF+K++GLGFKT R++ TYIDKKCPFT Sbjct: 3 EQTEKAFLKQPKVFLCSKKSGKGKRPGKGGNRFFKSVGLGFKTPREAIDGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 GNVSIRGRIL GT + AKM RTI VRR+YLHF+KKYQRYEKRHSN+ AHVSPCFRVKEGD Sbjct: 63 GNVSIRGRILAGTCHSAKMNRTIVVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 123 HVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28229 PE=4 SV=1 Length = 159
Score = 259 bits (663), Expect = 9e-68 Identities = 124/156 (79%), Positives = 135/156 (86%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTERAFLKQPKVFLC K SGKG+ PGK GNRF+KNIGLGFKT R++ TYIDKKCPFT Sbjct: 3 EQTERAFLKQPKVFLCPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 G VSIRGRI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD Sbjct: 63 GTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 513 VIIGQCRPLSKTVRFNV+KV P G+ GGKKAF A Sbjct: 123 HVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIA 158
>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum GN=rpS11 PE=2 SV=1 Length = 159
Score = 259 bits (662), Expect = 1e-67 Identities = 124/157 (78%), Positives = 135/157 (85%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTE+AFLKQPKVFL SGKG+ PGK GNRF+KNIGLGFKT R + TYIDKKCPFT Sbjct: 3 EQTEKAFLKQPKVFLSSNKSGKGKRPGKGGNRFWKNIGLGFKTPRDAIEGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 GNVSIRGRIL GT + AKM RTI VRR+YLH++KKYQRYEKRHSN+ AHVSPCFRVKEGD Sbjct: 63 GNVSIRGRILAGTCHSAKMQRTIIVRRNYLHYIKKYQRYEKRHSNIPAHVSPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 516 VIIGQCRP+SKTVRFNVLKV P GAA GGKKAFT + Sbjct: 123 HVIIGQCRPISKTVRFNVLKVIPAGAASGGKKAFTGL 159
>tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 160
Score = 259 bits (662), Expect = 1e-67 Identities = 126/158 (79%), Positives = 137/158 (86%), Gaps = 1/158 (0%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTERAFLKQPKVFL K SGKG+ PGK GNRF+KN+GLGFKT +++ TYIDKKCPFT Sbjct: 3 EQTERAFLKQPKVFLSSKKSGKGKRPGKGGNRFFKNVGLGFKTPKEAVQGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 GNVSIRGRIL GT AKMTRTI VRRDYLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD Sbjct: 63 GNVSIRGRILAGTCYSAKMTRTIIVRRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 VIIGQCRPLSKTVRFNVLKV P G++ G KKAFTA+ Sbjct: 123 HVIIGQCRPLSKTVRFNVLKVIPAGSSSGSAKKAFTAI 160
>tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 163
Score = 257 bits (657), Expect = 4e-67 Identities = 124/158 (78%), Positives = 138/158 (87%), Gaps = 1/158 (0%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTERAFLKQPKVFLC K SGKG+ PGK GNRF+K+IGLGFKT R++ Y+DKKCPFT Sbjct: 3 EQTERAFLKQPKVFLCSKKSGKGKRPGKGGNRFWKSIGLGFKTPREAIEGAYVDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 GNVSIRGRIL GT + AKM RTI VRR+YLH+VKKYQRYEKRHSN++AH+SPCFRVKEGD Sbjct: 63 GNVSIRGRILAGTCHSAKMNRTIIVRRNYLHYVKKYQRYEKRHSNIAAHISPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 516 VIIGQCRPLSKTVRFNVLKV P G+ G GKKAFTA+ Sbjct: 123 HVIIGQCRPLSKTVRFNVLKVIPAGSKGGSGKKAFTAI 160
>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2 SV=1 Length = 159
Score = 255 bits (651), Expect = 2e-66 Identities = 122/156 (78%), Positives = 135/156 (86%) Frame = +1
Query: 46 EQTERAFLKQPKVFLCGKTSGKGRAPGKRGNRFYKNIGLGFKTGRQSTASTYIDKKCPFT 225 EQTE+AFLKQPKVFL K SGKG+ PGK GNRF+K+IGLGFKT R++ TYIDKKCPFT Sbjct: 3 EQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFT 62
Query: 226 GNVSIRGRILTGTVNCAKMTRTITVRRDYLHFVKKYQRYEKRHSNLSAHVSPCFRVKEGD 405 G VSIRGRI+ GT + AKM RTI VRR+YLHFVKKYQRYEKRHSN+ AH+SPCFRVKEGD Sbjct: 63 GTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGD 122
Query: 406 KVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 513 VIIGQCRPLSKTVRFNV+KV P G+A GKKAFTA Sbjct: 123 HVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158
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