DK954787 |
Clone id |
TST39A01NGRL0021_G01 |
Library |
TST39 |
Length |
642 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_G01. 5' end sequence. |
Accession |
DK954787 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL340Contig1 |
Sequence |
CCTTGGCGTCATCTCTCAGTACTCCACTTCTTCTGCGAGATCACAGAAACGGGCACTTCG CGGAAGCCATCGCTATTCTAACTGTAAATTCAATCAGGGTATTACCTTCCACCCGCAGAA GCTTCTCGAATTAGACATGGCCTCTTTGAGAAGTGCTTCTCTTCCCACGCAGTGTTTCGT TACAGCCCACACGTCTGCTGAACCATTGTGCAAGCATGCACACACCCCTCGCCATATCCA CACAAGCTATGCTGTTCTTTCAAGCTGCAAACGCCCTGGATTTGATGGAACCCACCAAGC AGCTTCTACACACCGCCCTGGGAACCACAGAATTGAAACCTTTAATTTAAGTGGTCTCAC AGAGAATGAGAATGCTCATGAGGAGGGACACGCTGACTTTACCCTTTCAATTCGTGCTAT GGCTCCTGTTATGAAAAAAGGATACGGTGCATTTGGCGGTGGAGCTACCCTTGAAAAATC AAAGCTTGATTTGTCTCAGAAAACTTCGCAAGTAGCACCAAAGACCGAGGATGGTGGTGG TGGTGGAGATATTGGCAAGGGAATAAATCATGGCGGTGGAGATGGAGGTGACGATGGAGG TGATGATGATGATTACTTTGGGGATGCAGATGATGATGATGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9GK80 |
Definition |
sp|Q9GK80|UPAR_PANTR Urokinase plasminogen activator surface receptor OS=Pan troglodytes |
Align length |
56 |
Score (bit) |
30.4 |
E-value |
8.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7PYS5 |
Definition |
tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
34 |
Score (bit) |
45.4 |
E-value |
0.003 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954787|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_G01, 5' (642 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genom... 45 0.003 tr|A9RE60|A9RE60_PHYPA Predicted protein (Fragment) OS=Physcomit... 41 0.054 tr|A3BF39|A3BF39_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.12 tr|Q0WLD5|Q0WLD5_ARATH Putative uncharacterized protein At5g2469... 39 0.27 tr|B8B248|B8B248_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.35 tr|Q9FIR5|Q9FIR5_ARATH Arabidopsis thaliana genomic DNA, chromos... 38 0.60 tr|Q93W02|Q93W02_ARATH AT5g24690/MXC17_8 (Putative uncharacteriz... 38 0.60 tr|Q0WMD6|Q0WMD6_ARATH Putative uncharacterized protein At5g2469... 38 0.60 tr|Q0WMB2|Q0WMB2_ARATH Putative uncharacterized protein At5g2469... 38 0.60 tr|Q0WL68|Q0WL68_ARATH Putative uncharacterized protein At5g2469... 38 0.60 tr|Q0WKZ9|Q0WKZ9_ARATH Putative uncharacterized protein At5g2469... 38 0.60 tr|A9RKY3|A9RKY3_PHYPA Predicted protein OS=Physcomitrella paten... 35 3.0 tr|B7FHF2|B7FHF2_MEDTR Putative uncharacterized protein OS=Medic... 35 3.9
>tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026559001 PE=4 SV=1 Length = 504
Score = 45.4 bits (106), Expect = 0.003 Identities = 23/34 (67%), Positives = 28/34 (82%) Frame = +2
Query: 425 PVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPKT 526 PVMK YG+FG TLEKSKLDLSQK S+++P+T Sbjct: 90 PVMKGKYGSFGA-VTLEKSKLDLSQKQSRLSPET 122
>tr|A9RE60|A9RE60_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_22569 PE=4 SV=1 Length = 431
Score = 41.2 bits (95), Expect = 0.054 Identities = 22/29 (75%), Positives = 24/29 (82%), Gaps = 1/29 (3%) Frame = +2
Query: 446 GAFGGG-ATLEKSKLDLSQKTSQVAPKTE 529 GAFGGG ATLEKSKLDLSQ TS+V + E Sbjct: 1 GAFGGGGATLEKSKLDLSQSTSRVKQEVE 29
>tr|A3BF39|A3BF39_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_021661 PE=3 SV=1 Length = 1067
Score = 40.0 bits (92), Expect = 0.12 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 4/133 (3%) Frame = +2
Query: 41 SQKRALRGSHRYSNCKFNQGITFHPQKLLELDMASLRSASLPTQCFVTAHTS----AEPL 208 S K+ SH S+ K N G++ H M S + +S+ H EP Sbjct: 714 SPKKCCSSSHHGSHAKKNHGVSHHCSDGPCKSMVSCKESSVAKNACHDHHHEHNHHEEPA 773
Query: 209 CKHAHTPRHIHTSYAVLSSCKRPGFDGTHQAASTHRPGNHRIETFNLSGLTENENAHEEG 388 KH+ H S+CK P + H NH +T NL T+ + H Sbjct: 774 HKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHD-TKKHDCHGHE 832
Query: 389 HADFTLSIRAMAP 427 H+ + A+ P Sbjct: 833 HSTCKEELNALPP 845
>tr|Q0WLD5|Q0WLD5_ARATH Putative uncharacterized protein At5g24690 OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1 Length = 521
Score = 38.9 bits (89), Expect = 0.27 Identities = 18/35 (51%), Positives = 26/35 (74%) Frame = +2
Query: 419 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 523 M PVMK +G+ G TLEK KLD++QK S+++P+ Sbjct: 82 MCPVMKGKFGSVGA-VTLEKGKLDMTQKISEISPE 115
>tr|B8B248|B8B248_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_24354 PE=4 SV=1 Length = 1069
Score = 38.5 bits (88), Expect = 0.35 Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 4/133 (3%) Frame = +2
Query: 41 SQKRALRGSHRYSNCKFNQGITFHPQKLLELDMASLRSASLPTQCFVTAHTS----AEPL 208 S K+ SH S+ K N GI+ H M S + +S H EP Sbjct: 714 SPKKCCSSSHHGSHAKKNYGISNHCSDGPCKSMVSCKESSAAKNACHDHHHEHNHREEPA 773
Query: 209 CKHAHTPRHIHTSYAVLSSCKRPGFDGTHQAASTHRPGNHRIETFNLSGLTENENAHEEG 388 KH+ H S+CK P + H NH +T NL T+ + H Sbjct: 774 HKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHD-TKKHDCHGHE 832
Query: 389 HADFTLSIRAMAP 427 H+ + A+ P Sbjct: 833 HSTCKEELNALPP 845
>tr|Q9FIR5|Q9FIR5_ARATH Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXC17 OS=Arabidopsis thaliana PE=4 SV=1 Length = 129
Score = 37.7 bits (86), Expect = 0.60 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +2
Query: 419 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 523 M PVMK +G+ G TLEK KLD++QK S+ +P+ Sbjct: 82 MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115
>tr|Q93W02|Q93W02_ARATH AT5g24690/MXC17_8 (Putative uncharacterized protein At5g24690) (Putative uncharacterized protein At5g24700) OS=Arabidopsis thaliana GN=At5g24700 PE=2 SV=1 Length = 521
Score = 37.7 bits (86), Expect = 0.60 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +2
Query: 419 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 523 M PVMK +G+ G TLEK KLD++QK S+ +P+ Sbjct: 82 MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115
>tr|Q0WMD6|Q0WMD6_ARATH Putative uncharacterized protein At5g24690 OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1 Length = 521
Score = 37.7 bits (86), Expect = 0.60 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +2
Query: 419 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 523 M PVMK +G+ G TLEK KLD++QK S+ +P+ Sbjct: 82 MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115
>tr|Q0WMB2|Q0WMB2_ARATH Putative uncharacterized protein At5g24690 OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1 Length = 521
Score = 37.7 bits (86), Expect = 0.60 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +2
Query: 419 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 523 M PVMK +G+ G TLEK KLD++QK S+ +P+ Sbjct: 82 MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115
>tr|Q0WL68|Q0WL68_ARATH Putative uncharacterized protein At5g24690 OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1 Length = 521
Score = 37.7 bits (86), Expect = 0.60 Identities = 18/35 (51%), Positives = 25/35 (71%) Frame = +2
Query: 419 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 523 M PVMK +G+ G TLEK KLD++QK S+ +P+ Sbjct: 82 MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115
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