DK954822 |
Clone id |
TST39A01NGRL0021_H14 |
Library |
TST39 |
Length |
554 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_H14. 5' end sequence. |
Accession |
DK954822 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL128Contig1 |
Sequence |
GGACAACATATGGTTTAAGCCTGTGGCCAAGGTTATGGATGACAGAGATGAAGCCATCAG GCAGAAGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGC TGAGGCGATCCTCAAGGCCGCACGTGCAGAGACCACGGCGGAGCTCAACAAGATGAAGAG GGAGACGGCAGCAAAGCTTGATGCCAAGCTTCAGGAATCACGCGAAAGAATAGAGAAAGA GCTTGCAGAAGCTATTGCAAACCTAGAGGTGCAGAAGCAGGAGACTTTGAAGAGCCTTGA CAAGGAAGTCCAAGATCTAAGTGAGGAGATTATTGCTAAGGTCATTCCCTTCAAGATATG AGATGTGAGTTCGTCCTATTTTTTTGCTCCTTGCACTTCATTTCCGGCTGGAGCGAGAGG CCCTTTCAACAATGCCCCCTCTCGCCCTGTTGTACCCGATCATGTAATTTGTCCAAATGT AATTGCCTCTCACATTGATAATGCCATGTGCAAGACCTGGCTGAATTCAAAAAAAAAAAA AAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
116 |
Score (bit) |
126.0 |
E-value |
7.0e-29 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954822|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_H14, 5' (528 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 126 7e-29 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 70 5e-12 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 69 2e-11 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 67 7e-11 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 67 7e-11 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 60 6e-09 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 60 8e-09 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 59 1e-08 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 58 3e-08 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 56 1e-07 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 56 1e-07 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 55 2e-07 sp|Q5SHB3|CNPD_THET8 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 46 1e-04 sp|Q72HM1|CNPD_THET2 2',3'-cyclic-nucleotide 2'-phosphodiesteras... 45 2e-04 sp|P26681|ATPF_ENTHR ATP synthase B chain OS=Enterococcus hirae ... 45 2e-04 sp|O29104|VATE_ARCFU V-type ATP synthase subunit E OS=Archaeoglo... 44 5e-04 sp|Q5TZA2|CROCC_HUMAN Rootletin OS=Homo sapiens GN=CROCC PE=1 SV=1 44 6e-04 sp|A2AJI0|MA7D1_MOUSE MAP7 domain-containing protein 1 OS=Mus mu... 43 0.001 sp|Q9Y4D1|DAAM1_HUMAN Disheveled-associated activator of morphog... 42 0.002 sp|Q80UF4|SDCG8_MOUSE Serologically defined colon cancer antigen... 41 0.003 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 41 0.003 sp|Q8CJ40|CROCC_MOUSE Rootletin OS=Mus musculus GN=Crocc PE=1 SV=1 41 0.004 sp|P57120|ATPF_BUCAI ATP synthase B chain OS=Buchnera aphidicola... 41 0.004 sp|Q9UPV0|CE164_HUMAN Centrosomal protein of 164 kDa OS=Homo sap... 40 0.005 sp|O27351|DNAK_METTH Chaperone protein dnaK OS=Methanobacterium ... 40 0.007 sp|O51876|ATPF_BUCAP ATP synthase B chain OS=Buchnera aphidicola... 40 0.007 sp|Q62209|SYCP1_MOUSE Synaptonemal complex protein 1 OS=Mus musc... 40 0.009 sp|Q15149|PLEC1_HUMAN Plectin-1 OS=Homo sapiens GN=PLEC1 PE=1 SV=3 40 0.009 sp|Q9JI55|PLEC1_CRIGR Plectin-1 (Fragment) OS=Cricetulus griseus... 40 0.009 sp|Q03410|SYCP1_RAT Synaptonemal complex protein 1 OS=Rattus nor... 39 0.012
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 126 bits (316), Expect = 7e-29 Identities = 58/116 (50%), Positives = 90/116 (77%) Frame = +2
Query: 2 DNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKR 181 D I++ P+ MD RD +I+++L V+D S E+K+L+EQA A+++AARAE +A LNKMK+ Sbjct: 105 DKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQANAVMRAARAEISAALNKMKK 164
Query: 182 ETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVIP 349 ET +++AKL E R++IE EL EA+ +LE QK++T+KSLD ++ LS++I+ KV+P Sbjct: 165 ETQLEVEAKLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLP 220
>sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanophora paradoxa GN=atpG PE=3 SV=1 Length = 164
Score = 70.5 bits (171), Expect = 5e-12 Identities = 38/117 (32%), Positives = 65/117 (55%) Frame = +2
Query: 8 IWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKRET 187 +++KP+ K++D+R E I+ + +L Q E + AR + N + E Sbjct: 45 VFYKPLIKILDERKEYIQSNFNEAEKCLAQAAELTTQYETKITDARQNASKLTNTTRSEI 104
Query: 188 AAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVIPFKI 358 + KL+E++++ + ELA A LE+QK E LKSL+ EVQ LS +I+ K++ +I Sbjct: 105 QRFVSEKLEEAQKKADSELASATNKLELQKDEALKSLESEVQTLSTKILEKLLGIQI 161
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 68.6 bits (166), Expect = 2e-11 Identities = 34/111 (30%), Positives = 65/111 (58%) Frame = +2
Query: 14 FKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKRETAA 193 +KP+ + +D+RDE IR L ++ + +L Q E L R E A + + + E Sbjct: 48 YKPLGQALDNRDEYIRTNLQQAKERLQQATELANQYEQELAYTRREAQAIIEEARAEAQK 107
Query: 194 KLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 346 A++ +++ ++ EL +A A ++ QKQ TL++L+ +V LSE+++AK++ Sbjct: 108 IATAEIAAAQQALQAELMKAQAEIDQQKQATLQALEGQVSSLSEQLLAKLL 158
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 66.6 bits (161), Expect = 7e-11 Identities = 37/115 (32%), Positives = 65/115 (56%) Frame = +2
Query: 2 DNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKR 181 + I++KPV KV+D+RDE IR L + + +L + E L AR ++ ++ Sbjct: 38 NTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADELAAKYEEDLSEARRNAQLKIASSQK 97
Query: 182 ETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 346 E + +++++ EK +AEA L VQK+E LK+L+ +V LS++I K++ Sbjct: 98 EAQNIVSEDIKKAQLNAEKLIAEASKQLNVQKEEALKTLENQVDTLSDQIKVKLL 152
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 66.6 bits (161), Expect = 7e-11 Identities = 34/115 (29%), Positives = 67/115 (58%) Frame = +2
Query: 2 DNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKR 181 + I++KPV K++D+RDE IR L + + +L + E L AR + A++ ++ Sbjct: 38 NTIFYKPVTKILDERDEYIRTTLTTASSMLVKADELAAKYEEDLSKARRDAQAKIAASQK 97
Query: 182 ETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 346 + + + +++++ EK + EA L +QK+E LK+L+ +V LS++I K++ Sbjct: 98 DAQSIVSEDIKKAQMNAEKLITEASKQLNIQKEEALKTLEDQVDTLSDQIKTKLL 152
>sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific OS=Propionigenium modestum GN=atpF PE=1 SV=2 Length = 168
Score = 60.1 bits (144), Expect = 6e-09 Identities = 34/114 (29%), Positives = 60/114 (52%) Frame = +2
Query: 17 KPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKRETAAK 196 KP+AKV+D R E I L + + K +A+ I+K+A+ E L + +++ + Sbjct: 35 KPIAKVLDARKEKIANDLKQAEIDKEMAAKANGEAQGIVKSAKTEANEMLLRAEKKADER 94
Query: 197 LDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVIPFKI 358 + L+E+ + EK L A +E K++ K L EV DL+ ++ K+I K+ Sbjct: 95 KETILKEANTQREKMLKSAEVEIEKMKEQARKELQLEVTDLAVKLAEKMINEKV 148
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 59.7 bits (143), Expect = 8e-09 Identities = 32/113 (28%), Positives = 61/113 (53%) Frame = +2
Query: 8 IWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKRET 187 +++KP KV+DDRD+ +R + E+K L Q E L A R ++ A + + + E Sbjct: 43 VFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKALTAQYEQELAATRKQSQALIAEAQTEA 102
Query: 188 AAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 346 +L E++ + + +A ++ QK L++LD++V LS +I+ K++ Sbjct: 103 GRIAAQQLAEAQREAQAQREQAQQEIDQQKAVALQALDQQVDALSHQILDKLL 155
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 59.3 bits (142), Expect = 1e-08 Identities = 32/113 (28%), Positives = 66/113 (58%) Frame = +2
Query: 8 IWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKRET 187 +++ PVAKV+D+R+E IR+ L D + + + +Q E L R E ++ ++E Sbjct: 45 VFYNPVAKVLDEREEYIRKNLTQASDILAKAEAITKQYEKDLAQERREAQLIISVAQKEA 104
Query: 188 AAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 346 + +++++++ E + EA + L QKQ+ L +L+ +V L+E+I +K++ Sbjct: 105 QDIVALEIKQAQKDTELLVNEATSQLNSQKQKALSALEDQVNTLTEQIKSKLL 157
>sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. (strain PCC 6803) GN=atpG PE=3 SV=1 Length = 143
Score = 57.8 bits (138), Expect = 3e-08 Identities = 31/113 (27%), Positives = 61/113 (53%) Frame = +2
Query: 8 IWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKRET 187 I++KP+ KV+D+R + IR R+ + K + ++ E + AR ++ A + + E Sbjct: 25 IFYKPMNKVLDERADYIRTNEEDARERLAKAKAITQEYEQQITDARRQSQAVIADAQAEA 84
Query: 188 AAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 346 K+ E++ +++ A +E Q+Q L SL++EV LS +I+ K++ Sbjct: 85 RRLAAEKIAEAQRESQRQKETAAQEIEAQRQSALSSLEQEVAALSNQILHKLL 137
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 55.8 bits (133), Expect = 1e-07 Identities = 29/115 (25%), Positives = 69/115 (60%) Frame = +2
Query: 2 DNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQEQAEAILKAARAETTAELNKMKR 181 D ++KP+ KV+ DR+ I + L S S++ K+ + E ++ ++ E+ ++ +K Sbjct: 39 DITFYKPINKVLKDRENYILKTLESATQISEKTKETLARYEEVILKSKKESQQLIDSIKT 98
Query: 182 ETAAKLDAKLQESRERIEKELAEAIANLEVQKQETLKSLDKEVQDLSEEIIAKVI 346 +T + +L +++ + ++++I L +K++TLK L+++ ++LS++I K+I Sbjct: 99 KTEHDIVNELIQTQNSTREFISKSIKELYRKKEQTLKVLEEDTENLSDKIYLKLI 153
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T949 |
Definition |
tr|A9T949|A9T949_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
119 |
Score (bit) |
175.0 |
E-value |
1.0e-42 |
Report |
![](http://dbarchive.biosciencedbc.jp/images/togodb/expand.png) |