DK954836 |
Clone id |
TST39A01NGRL0021_I04 |
Library |
TST39 |
Length |
508 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_I04. 5' end sequence. |
Accession |
DK954836 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2165Contig1 |
Sequence |
GGACCAAAATAAGAAGATATTCTTTCCAATGTGCGCACGCTACAAAGGCAACTGGATATT TGAAGGACCAGTAGAAGGGAAGTGCTGGGCTTTTTCATGCATTTATGGAGTCCTCGCCAG ACTTCTTTTCCAGAGCCACAGGGTTTATAAACAGATAAATCCACAGGTCTCGGAAATTTG TGTTTAAAAGGCGACATGGTCAGTGTGCTGGAGATTATATTGCGGAGACATATTTTCATG TACCGGTGGGAGAAGTTCTTGTGCTCCTGCTTGTGGTACAAAATCATTCCAAGGAGATAC ACAAGTAATTTTGCCTTTGCAACTCCTTATGACACCACGTTTGTAATTATATCGTTTGCC ATTTGTATCTAGTGGAGGAACTCTTGTTATTGACATTATGGATTATTATACAACAAATAA TGCCTAGTTTTTGTGGAAATAAAGAGGTTTTACTGAGGTTTTGTCTAANAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A3LPQ8 |
Definition |
sp|A3LPQ8|MED10_PICST Mediator of RNA polymerase II transcription subunit 10 OS=Pichia stipitis |
Align length |
58 |
Score (bit) |
35.4 |
E-value |
0.11 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8F4P4 |
Definition |
tr|Q8F4P4|Q8F4P4_LEPIN Putative uncharacterized protein OS=Leptospira interrogans |
Align length |
77 |
Score (bit) |
35.4 |
E-value |
1.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954836|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_I04, 5' (451 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q8F4P4|Q8F4P4_LEPIN Putative uncharacterized protein OS=Lepto... 35 1.4 tr|Q72R39|Q72R39_LEPIC Putative uncharacterized protein OS=Lepto... 35 1.4 tr|Q8CGT8|Q8CGT8_MOUSE Argonaute 4 protein OS=Mus musculus GN=Ei... 35 1.9 tr|Q3ECU7|Q3ECU7_ARATH Uncharacterized protein At1g48410.2 OS=Ar... 35 1.9 tr|A7MD27|A7MD27_HUMAN Eukaryotic translation initiation factor ... 35 1.9 tr|Q15FB6|Q15FB6_9HYPO P450 monooxygenase OS=Neotyphodium lolii ... 35 2.5 tr|Q5ZMW0|Q5ZMW0_CHICK Putative uncharacterized protein OS=Gallu... 35 2.5 tr|Q4KLV6|Q4KLV6_XENLA MGC114859 protein OS=Xenopus laevis GN=ei... 35 2.5 tr|Q4SVE6|Q4SVE6_TETNG Chromosome 21 SCAF13761, whole genome sho... 34 3.2 tr|A9RTW5|A9RTW5_PHYPA Argonaute family member OS=Physcomitrella... 34 4.2 tr|Q4S7L5|Q4S7L5_TETNG Chromosome undetermined SCAF14714, whole ... 33 5.5 tr|Q8CGU0|Q8CGU0_MOUSE Argonaute 1 protein (Fragment) OS=Mus mus... 33 5.5 tr|A2VDG1|A2VDG1_MOUSE Eif2c1 protein (Fragment) OS=Mus musculus... 33 5.5 tr|A1L365|A1L365_MOUSE Eukaryotic translation initiation factor ... 33 5.5 tr|Q7PZ41|Q7PZ41_ANOGA AGAP011717-PA OS=Anopheles gambiae GN=AGA... 33 5.5 tr|Q28ZU1|Q28ZU1_DROPS GA19767 OS=Drosophila pseudoobscura pseud... 33 5.5 tr|Q16M62|Q16M62_AEDAE Eukaryotic translation initiation factor ... 33 5.5 tr|Q16EE2|Q16EE2_AEDAE Eukaryotic translation initiation factor ... 33 5.5 tr|B7QCC4|B7QCC4_IXOSC Translation initiation factor 2C, putativ... 33 5.5 tr|B4N5V9|B4N5V9_DROWI GK17851 OS=Drosophila willistoni GN=GK178... 33 5.5 tr|B4LJF3|B4LJF3_DROVI GJ21530 OS=Drosophila virilis GN=GJ21530 ... 33 5.5 tr|B4JW20|B4JW20_DROGR GH22955 OS=Drosophila grimshawi GN=GH2295... 33 5.5 tr|B4GGS7|B4GGS7_DROPE GL17077 OS=Drosophila persimilis GN=GL170... 33 5.5 tr|B3MHG1|B3MHG1_DROAN GF11153 OS=Drosophila ananassae GN=GF1115... 33 5.5 tr|B0WFU8|B0WFU8_CULQU Eukaryotic translation initiation factor ... 33 5.5 tr|A9NJ58|A9NJ58_PENMO Argonaute 1 isoform B OS=Penaeus monodon ... 33 5.5 tr|A9NJ57|A9NJ57_PENMO Argonaute 1 isoform A OS=Penaeus monodon ... 33 5.5 tr|Q5TA58|Q5TA58_HUMAN Eukaryotic translation initiation factor ... 33 5.5 tr|B3KME0|B3KME0_HUMAN cDNA FLJ10760 fis, clone NT2RP3004618, hi... 33 5.5 tr|B2RAD8|B2RAD8_HUMAN cDNA, FLJ94852, highly similar to Homo sa... 33 5.5
>tr|Q8F4P4|Q8F4P4_LEPIN Putative uncharacterized protein OS=Leptospira interrogans GN=LA1996 PE=4 SV=1 Length = 216
Score = 35.4 bits (80), Expect = 1.4 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -3
Query: 362 MANDIITNVVS*GVAKAKLLVYLLGMILYHKQEHKNFSHRYMKICLRNIISSTLTMSP-F 186 + ++I ++VS GV ++K+L+Y L + KNFS +KICL + + L +S F Sbjct: 101 LTSEIQNSLVSLGVDESKILIYKLEP---YPTGAKNFSKSLLKICLDRQLKNILILSKRF 157
Query: 185 KHKFPRPVDLSVYKPCG 135 + F + + SV P G Sbjct: 158 ESSFNQRLYESVLGPAG 174
>tr|Q72R39|Q72R39_LEPIC Putative uncharacterized protein OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=LIC_11912 PE=4 SV=1 Length = 216
Score = 35.4 bits (80), Expect = 1.4 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Frame = -3
Query: 362 MANDIITNVVS*GVAKAKLLVYLLGMILYHKQEHKNFSHRYMKICLRNIISSTLTMSP-F 186 + ++I ++VS GV ++K+L+Y L + KNFS +KICL + + L +S F Sbjct: 101 LTSEIQNSLVSLGVDESKILIYKLEP---YPTGAKNFSKSLLKICLDRQLKNILILSKRF 157
Query: 185 KHKFPRPVDLSVYKPCG 135 + F + + SV P G Sbjct: 158 ESSFNQRLYESVLGPAG 174
>tr|Q8CGT8|Q8CGT8_MOUSE Argonaute 4 protein OS=Mus musculus GN=Eif2c4 PE=2 SV=1 Length = 1112
Score = 35.0 bits (79), Expect = 1.9 Identities = 23/85 (27%), Positives = 41/85 (48%) Frame = -3
Query: 305 LVYLLGMILYHKQEHKNFSHRYMKICLRNIISSTLTMSPFKHKFPRPVDLSVYKPCGSGK 126 L LL + H E + S + + + R++ S T P F P + Y P G G+ Sbjct: 277 LQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYT--PVGRSFFSPPE-GYYHPLGGGR 333
Query: 125 EVWRGLHKCMKKPSTSLLLVLQISS 51 EVW G H+ ++ +++L + +S+ Sbjct: 334 EVWFGFHQSVRPAMWNMMLNIDVSA 358
>tr|Q3ECU7|Q3ECU7_ARATH Uncharacterized protein At1g48410.2 OS=Arabidopsis thaliana GN=At1g48410 PE=4 SV=1 Length = 1050
Score = 35.0 bits (79), Expect = 1.9 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = -3
Query: 323 VAKAKLLVYLLGMILYHKQ-EHKNFSHRYMKICLRNIISSTLTMSPFKHKFPRPVDLSVY 147 VA+A L + LGM L KQ + + + + I LR + +S + P F P D+ Sbjct: 294 VARADL--HHLGMFLEGKQSDAPQEALQVLDIVLRELPTSRIRYIPVGRSFYSP-DIGKK 350
Query: 146 KPCGSGKEVWRGLHKCMKKPSTSLLLVLQISS 51 + G G E WRG ++ ++ L L + +SS Sbjct: 351 QSLGDGLESWRGFYQSIRPTQMGLSLNIDMSS 382
>tr|A7MD27|A7MD27_HUMAN Eukaryotic translation initiation factor 2C, 4 OS=Homo sapiens GN=EIF2C4 PE=2 SV=1 Length = 861
Score = 35.0 bits (79), Expect = 1.9 Identities = 23/85 (27%), Positives = 41/85 (48%) Frame = -3
Query: 305 LVYLLGMILYHKQEHKNFSHRYMKICLRNIISSTLTMSPFKHKFPRPVDLSVYKPCGSGK 126 L LL + H E + S + + + R++ S T P F P + Y P G G+ Sbjct: 130 LQLLLEALAGHLNEVPDDSVQALDVITRHLPSMRYT--PVGRSFFSPPE-GYYHPLGGGR 186
Query: 125 EVWRGLHKCMKKPSTSLLLVLQISS 51 EVW G H+ ++ +++L + +S+ Sbjct: 187 EVWFGFHQSVRPAMWNMMLNIDVSA 211
>tr|Q15FB6|Q15FB6_9HYPO P450 monooxygenase OS=Neotyphodium lolii GN=ltmJ PE=4 SV=1 Length = 525
Score = 34.7 bits (78), Expect = 2.5 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 4/92 (4%) Frame = +2
Query: 17 IFFPMCARYKGNWIFEGPVEGKCWAFSCIYGVLARLLFQSHRV----YKQINPQVSEICV 184 IF MC+ GN P G W F + V R +FQS + Y + + +I Sbjct: 32 IFCIMCSWLPGNGEMRAPFVGYRWPFEPTFWVRMRFIFQSLGMMTEGYSKFKDSMFKITT 91
Query: 185 *KATWSVCWRLYCGDIFSCTGGRSSCAPACGT 280 A W V + Y D+ S R S A T Sbjct: 92 NDADWLVLSQRYLDDLQSLPAERLSHTDALVT 123
>tr|Q5ZMW0|Q5ZMW0_CHICK Putative uncharacterized protein OS=Gallus gallus GN=RCJMB04_1a17 PE=2 SV=1 Length = 794
Score = 34.7 bits (78), Expect = 2.5 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -3
Query: 305 LVYLLGMILYHKQEHKNFSHRYMKICLRNIISSTLTMSPFKHKFPRPVDLSVYKPCGSGK 126 L LL + H E S + + + R++ S T P F P + Y P G G+ Sbjct: 63 LQLLLEALAGHLNEVPEDSVQALDVITRHLPSMRYT--PVGRSFFSPPE-GYYHPLGGGR 119
Query: 125 EVWRGLHKCMKKPSTSLLLVLQISS 51 EVW G H+ ++ +++L + +S+ Sbjct: 120 EVWFGFHQSVRPAMWNMMLNIDVSA 144
>tr|Q4KLV6|Q4KLV6_XENLA MGC114859 protein OS=Xenopus laevis GN=eif2c3 PE=2 SV=1 Length = 884
Score = 34.7 bits (78), Expect = 2.5 Identities = 23/85 (27%), Positives = 41/85 (48%) Frame = -3
Query: 305 LVYLLGMILYHKQEHKNFSHRYMKICLRNIISSTLTMSPFKHKFPRPVDLSVYKPCGSGK 126 L LL + H E + S + + + R++ S T P F P + Y P G G+ Sbjct: 153 LQLLLEALSGHLSEVPDDSVQALDVITRHLPSMRYT--PVGRSFFSPPE-GYYHPLGGGR 209
Query: 125 EVWRGLHKCMKKPSTSLLLVLQISS 51 EVW G H+ ++ +++L + +S+ Sbjct: 210 EVWFGFHQSVRPAMWNMMLNIDVSA 234
>tr|Q4SVE6|Q4SVE6_TETNG Chromosome 21 SCAF13761, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00012015001 PE=4 SV=1 Length = 945
Score = 34.3 bits (77), Expect = 3.2 Identities = 23/85 (27%), Positives = 40/85 (47%) Frame = -3
Query: 305 LVYLLGMILYHKQEHKNFSHRYMKICLRNIISSTLTMSPFKHKFPRPVDLSVYKPCGSGK 126 L LL + H E S + + + R++ S T P F P + Y P G G+ Sbjct: 142 LQMLLEALSGHLNEVPEDSVQALDVITRHLPSMRYT--PVGRSFFSPPE-GYYHPLGGGR 198
Query: 125 EVWRGLHKCMKKPSTSLLLVLQISS 51 EVW G H+ ++ +++L + +S+ Sbjct: 199 EVWFGFHQSVRPAMWNMMLNIDVSA 223
>tr|A9RTW5|A9RTW5_PHYPA Argonaute family member OS=Physcomitrella patens subsp. patens GN=PpAGO1a PE=4 SV=1 Length = 1120
Score = 33.9 bits (76), Expect = 4.2 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%) Frame = -3
Query: 314 AKLLVYLLGMILYHKQ-EHKNFSHRYMKICLRNIISSTLTMSPFKHKFPRPVDLSVYKPC 138 A+ ++ LG L +Q + + + + I LR + + SP F P +L +P Sbjct: 363 ARADLHHLGQFLLGRQADAPQEALQVLDIVLRELPTHRCVYSPVGRSFYSP-NLGTRQPL 421
Query: 137 GSGKEVWRGLHKCMKKPSTSLLLVLQISS 51 G G E WRG ++ ++ L L + +SS Sbjct: 422 GDGLESWRGFYQSIRPTQMGLSLNIDMSS 450
|