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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954839
Clone id TST39A01NGRL0021_I07
Library
Length 500
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_I07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTTACAGAGAACAGAAAGGTCGACGTCGTTTACAGAGAATTACAGAAAGGTCGACGCGC
ATACAGAGGGCTAGATCGCCTGGGTGAGATGGAAGCTCCTGCGTGCTCGTGATTGTCGGG
CATACCTGCGGTGTAGAGCTAGATTGCCTGGCTGGGGAGCCACTCCTGCGTGCTCGTGAG
TGTTGGGCATACCTGCGGTGTGAAGGGAGAAAGCCTGAGAGAGAGAGAGAGAACACTGCA
GTGAAAGGAAGTATTGCAGATCTTGCGAACCGAAGCAAAGAAGGGAACATCGCATTCAGC
AGGTTGTCATGCGCATTACAATGCGGAGGCGACTTGAATTTGGACTTCTGAGCCGCCTAA
TAAAACTAGTGTATTTGTGCTACCTTGTCTAGATTTTGTCACCCAATGTTAGATTGTACC
TCATGTGGACTCCCTACATTGGCTAAATGTGGATTTTTTTGCCCGTCTATTTATTTCAAT
ATGTAATCGGGCAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O29151
Definition sp|O29151|RS24_ARCFU 30S ribosomal protein S24e OS=Archaeoglobus fulgidus
Align length 41
Score (bit) 31.6
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954839|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_I07, 5'
         (500 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O29151|RS24_ARCFU 30S ribosomal protein S24e OS=Archaeoglobus...    32   2.1  
sp|Q2IKQ7|PUR9_ANADE Bifunctional purine biosynthesis protein pu...    31   3.7  
sp|P00735|THRB_BOVIN Prothrombin OS=Bos taurus GN=F2 PE=1 SV=2         30   8.2  

>sp|O29151|RS24_ARCFU 30S ribosomal protein S24e OS=Archaeoglobus
           fulgidus GN=rps24e PE=3 SV=1
          Length = 110

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 160 PLLRARECWAYLRCEGRKPERERENTAVKGSIADLANRSKE 282
           PLLR RE +  L  EG+ P R+     V+G IA L N   E
Sbjct: 15  PLLRRREVYCRLSFEGKTPSRKE----VRGKIAGLMNAEPE 51


>sp|Q2IKQ7|PUR9_ANADE Bifunctional purine biosynthesis protein purH
           OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=purH
           PE=3 SV=1
          Length = 524

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 88  DGSSCVLVIVGHTCGVELDCLAGEPLLRAREC 183
           D ++CV++     CGV     AGE   RAREC
Sbjct: 270 DETACVVIKHNTPCGVSTGRTAGEAFARAREC 301


>sp|P00735|THRB_BOVIN Prothrombin OS=Bos taurus GN=F2 PE=1 SV=2
          Length = 625

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 127 CGVELDCLAGEPLLRARECWA-YLRCEGRKPERERENTAVKGSIADLANRSKEGNIAFSR 303
           C  E    A E L      WA Y  CE  +  RE+ N  ++G+ A+    +  GN++ +R
Sbjct: 66  CSREEAFEALESLSATDAFWAKYTACESARNPREKLNECLEGNCAEGVGMNYRGNVSVTR 125

Query: 304 --LSCAL 318
             + C L
Sbjct: 126 SGIECQL 132
tr_hit_id A7IM09
Definition tr|A7IM09|A7IM09_XANP2 Lytic transglycosylase catalytic OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2)
Align length 47
Score (bit) 34.7
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954839|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_I07, 5'
         (500 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7IM09|A7IM09_XANP2 Lytic transglycosylase catalytic OS=Xanth...    35   2.6  
tr|Q6C473|Q6C473_YARLI YALI0E29161p OS=Yarrowia lipolytica GN=YA...    34   3.3  
tr|A9RVI0|A9RVI0_PHYPA Predicted protein OS=Physcomitrella paten...    34   4.4  
tr|B0FLQ9|B0FLQ9_STRPU Seali OS=Strongylocentrotus purpuratus PE...    34   4.4  
tr|B6KJR6|B6KJR6_TOXGO Sec7 domain-containing protein OS=Toxopla...    33   5.7  
tr|B6KCS5|B6KCS5_TOXGO Putative uncharacterized protein OS=Toxop...    33   5.7  
tr|B4IY19|B4IY19_DROGR GH16936 OS=Drosophila grimshawi GN=GH1693...    33   5.7  
tr|Q4SB25|Q4SB25_TETNG Chromosome undetermined SCAF14677, whole ...    33   7.4  
tr|Q2PR57|Q2PR57_TETNG Odorant receptor OS=Tetraodon nigroviridi...    33   7.4  
tr|B0R1A0|B0R1A0_DANRE Novel protein similar to vertebrate plasm...    33   9.7  
tr|B8CDB7|B8CDB7_THAPS Predicted protein OS=Thalassiosira pseudo...    33   9.7  
tr|B8AZQ1|B8AZQ1_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.7  
tr|B3MN55|B3MN55_DROAN GF14242 OS=Drosophila ananassae GN=GF1424...    33   9.7  
tr|A4HLW9|A4HLW9_LEIBR Putative uncharacterized protein OS=Leish...    33   9.7  
tr|Q2UUA8|Q2UUA8_ASPOR Predicted protein OS=Aspergillus oryzae G...    33   9.7  
tr|B8NRU4|B8NRU4_ASPFL Putative uncharacterized protein OS=Asper...    33   9.7  

>tr|A7IM09|A7IM09_XANP2 Lytic transglycosylase catalytic
           OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 /
           Py2) GN=Xaut_3828 PE=3 SV=1
          Length = 772

 Score = 34.7 bits (78), Expect = 2.6
 Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
 Frame = -1

Query: 203 SHRRYAQHSRARRSGSPA--RQSSSTPQVCPTITSTQELPSHPGDLA 69
           +H+  A+ S ++ SG PA  R  ++TPQV PT+ ++  +P   GDLA
Sbjct: 101 AHKDAAKPSTSKPSGKPATARAPAATPQVAPTLGASSNIPG--GDLA 145


>tr|Q6C473|Q6C473_YARLI YALI0E29161p OS=Yarrowia lipolytica
           GN=YALI0E29161g PE=4 SV=2
          Length = 2031

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = -1

Query: 284 PSLLRFARSAILPFTAVFSLSLSGFLPSHRRYAQHSRARRSGSPARQSSSTPQVCPTITS 105
           P LL    S     T+  S ++SG LP  R  + HSR   S +P+R  S TP + P+  +
Sbjct: 17  PKLLSNIYSKFRSITSAASSAVSGVLPKER--SGHSRTS-SQAPSRAHSCTPSIAPSFRA 73

Query: 104 TQE 96
           + E
Sbjct: 74  SDE 76


>tr|A9RVI0|A9RVI0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_161291 PE=4 SV=1
          Length = 2216

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 24/86 (27%), Positives = 39/86 (45%)
 Frame = -1

Query: 308 DNLLNAMFPSLLRFARSAILPFTAVFSLSLSGFLPSHRRYAQHSRARRSGSPARQSSSTP 129
           D+L+  ++ S ++   ++ LPF  V S S +G  P    YA+    + SGS     SS P
Sbjct: 262 DDLVTQLYKSKIQAYDASSLPFHVVGSTSATGTTPVQMCYAEVLLDQLSGSTRATRSSAP 321

Query: 128 QVCPTITSTQELPSHPGDLALCMRVD 51
           +   T +  +   S  G   L   +D
Sbjct: 322 EASETKSHGKAFNSADGGHVLIYPLD 347


>tr|B0FLQ9|B0FLQ9_STRPU Seali OS=Strongylocentrotus purpuratus PE=2
           SV=1
          Length = 959

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -1

Query: 215 GFLPSHRRYAQHSRARRSGSPARQSSSTPQVCPTITSTQELPS 87
           GF    +  AQ S AR++ SPARQS S P   P+ T     PS
Sbjct: 110 GFTSQQQPTAQKSPARQTPSPARQSPSPPGKSPSPTGKSPSPS 152


>tr|B6KJR6|B6KJR6_TOXGO Sec7 domain-containing protein OS=Toxoplasma
            gondii ME49 GN=TGME49_032190 PE=4 SV=1
          Length = 3294

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 27/78 (34%), Positives = 35/78 (44%)
 Frame = -1

Query: 320  CNAHDNLLNAMFPSLLRFARSAILPFTAVFSLSLSGFLPSHRRYAQHSRARRSGSPARQS 141
            C   D LL+ +F SL   A   +     + +L LS F PS    +    A  SG PAR S
Sbjct: 1995 CFKFDQLLSQIFTSLPPAAALPLASVLVLHTLPLSSFPPSAPSLSDSPPA--SGDPARAS 2052

Query: 140  SSTPQVCPTITSTQELPS 87
            SS   V    +S  E P+
Sbjct: 2053 SSLAAVAAGDSSFLESPN 2070


>tr|B6KCS5|B6KCS5_TOXGO Putative uncharacterized protein OS=Toxoplasma
            gondii ME49 GN=TGME49_069670 PE=4 SV=1
          Length = 2127

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -1

Query: 239  AVFSLSLSGFLPSHRRYAQHSRARRSGSPARQSSSTPQVCPTITSTQELPSHPGDLALCM 60
            A F++  SG L    R    SR    G PA          P I    E  +  GD+A+C 
Sbjct: 1002 AAFAVLPSGLLSQEGRPRSLSRPSTFGLPAVSRPLANAALPGILFPAETEAGRGDVAVCA 1061

Query: 59   RVDLSVILCKR-RRPFC 12
            R + S    +R R P+C
Sbjct: 1062 RTENSTEAARRDRGPYC 1078


>tr|B4IY19|B4IY19_DROGR GH16936 OS=Drosophila grimshawi GN=GH16936
           PE=4 SV=1
          Length = 410

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +1

Query: 208 RKPERERENTAVKGSIADLANRSKEGNIAFSRLSCALQCGGDLNLDF 348
           RKP++E +N  V   I ++ + +K  N AF+R    L    +LNL+F
Sbjct: 72  RKPKKEPQNVLVAEKITEMQSLTKFPNPAFTRTHAPLIKDSELNLEF 118


>tr|Q4SB25|Q4SB25_TETNG Chromosome undetermined SCAF14677, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00021157001 PE=3 SV=1
          Length = 314

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 332 SPPHCNAHDNLLNAMFPSLLRFARSAILPFTAVFSLSLSG 213
           SP H  +H   +   FP L R+ R  +LPF+A + L L G
Sbjct: 5   SPGHNLSHSTFIFRGFPELHRYRRLLVLPFSATYLLVLLG 44


>tr|Q2PR57|Q2PR57_TETNG Odorant receptor OS=Tetraodon nigroviridis
           GN=OR14677-8 PE=3 SV=1
          Length = 329

 Score = 33.1 bits (74), Expect = 7.4
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -1

Query: 332 SPPHCNAHDNLLNAMFPSLLRFARSAILPFTAVFSLSLSG 213
           SP H  +H   +   FP L R+ R  +LPF+A + L L G
Sbjct: 5   SPGHNLSHSTFIFRGFPELHRYRRLLVLPFSATYLLVLLG 44


>tr|B0R1A0|B0R1A0_DANRE Novel protein similar to vertebrate
           plasminogen activator, tissue (PLAT) (Fragment) OS=Danio
           rerio GN=CH211-220D9.5-001 PE=4 SV=1
          Length = 206

 Score = 32.7 bits (73), Expect = 9.7
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
 Frame = +3

Query: 15  ERSTSFTENYRK--VDAHTEG*----IAWVRWKLLRARDCRAYLRCRAR 143
           +R    T NYR+  VD+++       + W+RWK L+   CR  LR RAR
Sbjct: 25  DRQKRGTRNYREACVDSNSAAVRDIGVTWLRWKGLKVEFCRCALRGRAR 73