DK954849 |
Clone id |
TST39A01NGRL0021_I17 |
Library |
TST39 |
Length |
570 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_I17. 5' end sequence. |
Accession |
DK954849 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL228Contig1 |
Sequence |
CTTCTCTGAGGCGTCTGTTTGAGGGGTTCGAGACCGACATCGCCATCGCTGCAGTGCCGG CAAGCTTCCCCCCTCATTCCCTCTGTTCGCAGTCCCGTGATCATGAATCCTGAATATGAC TATCTTTTCAAACTTTTGCTGATTGGTGATTCGGGCGTTGGGAAATCTTGCCTTTTGCTT CGGTTTGCTGATGATTCTTATCTGGAAAGCTACATCAGCACAATTGGTGTCGACTTTAAA ATTCGCACAGTTGAACTTGACAGCAAAACCATCAAGCTACAGATTTGGGACACTGCTGGT CAAGAGCGATTTCGGACAATCACAAGCAGCTATTATCGGGGAGCTCATGGCATTATTATC GTTTATGACGTTACAGACCAGGAAAGCTTCAACAATGTAAAGCAGTGGTTGAATGAAATT GATCGTTATGCTAGTGAAAATGTGAACAAACTTTTGGTTGGGAACAAGAGCGATTTGACA GCAAAGAAAGTTGTTGATACACAAACTGCTAAGGCATATGCTGATGAAATTGGCATTCCC TTTCTGGAAACGAGTGCAAAGAATGCGAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q05737 |
Definition |
sp|Q05737|YPTM2_MAIZE GTP-binding protein YPTM2 OS=Zea mays |
Align length |
156 |
Score (bit) |
294.0 |
E-value |
2.0e-79 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NKP5 |
Definition |
tr|A9NKP5|A9NKP5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
155 |
Score (bit) |
302.0 |
E-value |
1.0e-80 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954849|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_I17, 5' (570 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NKP5|A9NKP5_PICSI Putative uncharacterized protein OS=Picea... 302 1e-80 tr|A9SLS3|A9SLS3_PHYPA Rab1/RabD-family small GTPase OS=Physcomi... 299 6e-80 tr|A9SMJ7|A9SMJ7_PHYPA Rab1/RabD-family small GTPase OS=Physcomi... 298 1e-79 tr|B7FH02|B7FH02_MEDTR Putative uncharacterized protein OS=Medic... 294 2e-78 tr|B4FC26|B4FC26_MAIZE Putative uncharacterized protein OS=Zea m... 294 3e-78 tr|B4FQY4|B4FQY4_MAIZE Putative uncharacterized protein OS=Zea m... 293 4e-78 tr|Q949E2|Q949E2_ORYSA Putative GTP-binding protein OS=Oryza sat... 293 5e-78 tr|Q6H8G2|Q6H8G2_ORYSJ cDNA, clone: J100058B03, full insert sequ... 293 5e-78 tr|Q0JQ62|Q0JQ62_ORYSJ cDNA clone:006-208-C02, full insert seque... 293 5e-78 tr|A9PEC2|A9PEC2_POPTR Putative uncharacterized protein OS=Popul... 293 5e-78 tr|A7R0F4|A7R0F4_VITVI Chromosome undetermined scaffold_306, who... 293 5e-78 tr|A2WLD6|A2WLD6_ORYSI Putative uncharacterized protein OS=Oryza... 293 5e-78 tr|A9P8E1|A9P8E1_POPTR Putative uncharacterized protein OS=Popul... 293 6e-78 tr|A9NPH9|A9NPH9_PICSI Putative uncharacterized protein OS=Picea... 293 6e-78 tr|Q2A9H3|Q2A9H3_BRAOL GTP-binding protein, putative OS=Brassica... 292 8e-78 tr|Q1WK27|Q1WK27_CHLIN YptC1 OS=Chlamydomonas incerta GN=yptC1 P... 292 1e-77 tr|A8JHQ7|A8JHQ7_CHLRE Small rab-related GTPase OS=Chlamydomonas... 292 1e-77 tr|Q2A9V7|Q2A9V7_BRAOL GTP-binding protein, putative OS=Brassica... 291 1e-77 tr|Q9SXT5|Q9SXT5_CICAR Rab-type small GTP-binding protein OS=Cic... 291 2e-77 tr|Q08153|Q08153_PEA GTP-binding protein OS=Pisum sativum PE=2 SV=1 291 2e-77 tr|Q9FPJ4|Q9FPJ4_ARATH AT5g47200 (Ras-related small GTP-binding ... 290 3e-77 tr|Q40203|Q40203_LOTJA RAB1C OS=Lotus japonicus GN=rab1C PE=2 SV=1 290 4e-77 tr|Q9SEH3|Q9SEH3_ARATH Ras-related small GTP-binding protein (Ra... 290 5e-77 tr|Q8W4S8|Q8W4S8_ARATH AT4g17530/dl4800c OS=Arabidopsis thaliana... 290 5e-77 tr|O24112|O24112_NICPL Small GTP-binding protein OS=Nicotiana pl... 290 5e-77 tr|B6RB23|B6RB23_HALDI Ras-related protein Rab-1A OS=Haliotis di... 290 5e-77 tr|Q68V18|Q68V18_POAPR RAB1-like OS=Poa pratensis GN=rab1-1 PE=2... 289 7e-77 tr|A7PBQ0|A7PBQ0_VITVI Chromosome chr16 scaffold_10, whole genom... 289 7e-77 tr|A9PBJ4|A9PBJ4_POPTR Putative uncharacterized protein OS=Popul... 288 2e-76 tr|Q7ZXF7|Q7ZXF7_XENLA Rab1-prov protein OS=Xenopus laevis GN=ra... 287 3e-76
>tr|A9NKP5|A9NKP5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 202
Score = 302 bits (773), Expect = 1e-80 Identities = 150/155 (96%), Positives = 153/155 (98%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELD KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNA 567 NK+DLTAKKVVD QTAKA+ADEIGIPFLETSAKNA Sbjct: 121 NKNDLTAKKVVDYQTAKAFADEIGIPFLETSAKNA 155
>tr|A9SLS3|A9SLS3_PHYPA Rab1/RabD-family small GTPase OS=Physcomitrella patens subsp. patens GN=RabD11 PE=3 SV=1 Length = 204
Score = 299 bits (766), Expect = 6e-80 Identities = 148/156 (94%), Positives = 153/156 (98%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELD KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NKSDL +KKVVD +TAKA+ADEIGIPFLETSAKNA+ Sbjct: 121 NKSDLASKKVVDYETAKAFADEIGIPFLETSAKNAT 156
>tr|A9SMJ7|A9SMJ7_PHYPA Rab1/RabD-family small GTPase OS=Physcomitrella patens subsp. patens GN=RabD12 PE=3 SV=1 Length = 203
Score = 298 bits (764), Expect = 1e-79 Identities = 149/156 (95%), Positives = 152/156 (97%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELD KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NKSDL +KKVVD TAKA+ADEIGIPFLETSAKNA+ Sbjct: 121 NKSDLASKKVVDYATAKAFADEIGIPFLETSAKNAT 156
>tr|B7FH02|B7FH02_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 202
Score = 294 bits (753), Expect = 2e-78 Identities = 145/156 (92%), Positives = 152/156 (97%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVE D KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NKSDL+ KKVV ++TAKA+ADEIGIPF+ETSAKNAS Sbjct: 121 NKSDLSDKKVVSSETAKAFADEIGIPFMETSAKNAS 156
>tr|B4FC26|B4FC26_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 203
Score = 294 bits (752), Expect = 3e-78 Identities = 145/156 (92%), Positives = 152/156 (97%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVE D KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NKSDLTA KVV T+TAKA+ADE+GIPF+ETSAKNA+ Sbjct: 121 NKSDLTANKVVATETAKAFADEMGIPFMETSAKNAT 156
>tr|B4FQY4|B4FQY4_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 203
Score = 293 bits (751), Expect = 4e-78 Identities = 145/155 (93%), Positives = 151/155 (97%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVE D KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNA 567 NKSDLTA KVV T+TAKA+ADE+GIPF+ETSAKNA Sbjct: 121 NKSDLTANKVVATETAKAFADEMGIPFMETSAKNA 155
>tr|Q949E2|Q949E2_ORYSA Putative GTP-binding protein OS=Oryza sativa GN=W455ERIPDK PE=3 SV=1 Length = 203
Score = 293 bits (750), Expect = 5e-78 Identities = 144/156 (92%), Positives = 152/156 (97%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVE D KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NKSDLTA KVV ++TAKA+ADE+GIPF+ETSAKNA+ Sbjct: 121 NKSDLTANKVVSSETAKAFADEMGIPFMETSAKNAT 156
>tr|Q6H8G2|Q6H8G2_ORYSJ cDNA, clone: J100058B03, full insert sequence OS=Oryza sativa subsp. japonica GN=P0491E01.39 PE=2 SV=1 Length = 203
Score = 293 bits (750), Expect = 5e-78 Identities = 144/156 (92%), Positives = 152/156 (97%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVE D KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NKSDLTA KVV ++TAKA+ADE+GIPF+ETSAKNA+ Sbjct: 121 NKSDLTANKVVSSETAKAFADEMGIPFMETSAKNAT 156
>tr|Q0JQ62|Q0JQ62_ORYSJ cDNA clone:006-208-C02, full insert sequence OS=Oryza sativa subsp. japonica GN=Os01g0179700 PE=2 SV=1 Length = 203
Score = 293 bits (750), Expect = 5e-78 Identities = 144/156 (92%), Positives = 152/156 (97%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVE D KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NKSDLTA KVV ++TAKA+ADE+GIPF+ETSAKNA+ Sbjct: 121 NKSDLTANKVVSSETAKAFADEMGIPFMETSAKNAT 156
>tr|A9PEC2|A9PEC2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 203
Score = 293 bits (750), Expect = 5e-78 Identities = 145/156 (92%), Positives = 150/156 (96%) Frame = +1
Query: 103 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVELDSKTIKLQ 282 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVE D KTIKLQ Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQ 60
Query: 283 IWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 462 IWDTAGQERFRTITSSYYRGAHGII+VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG Sbjct: 61 IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVG 120
Query: 463 NKSDLTAKKVVDTQTAKAYADEIGIPFLETSAKNAS 570 NK DLTA KVV +TAKA+ADEIGIPF+ETSAKNA+ Sbjct: 121 NKCDLTANKVVSYETAKAFADEIGIPFMETSAKNAT 156
|