DK954860 |
Clone id |
TST39A01NGRL0021_J04 |
Library |
TST39 |
Length |
406 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_J04. 5' end sequence. |
Accession |
DK954860 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL104Contig1 |
Sequence |
CTAATGGTTCGCAGTTTTTCCTCTGCACTGTCCAGACCCAGTGGCTTGATGGAAAGCATG TTGTATTCGGACGTGTTGTGGAGGGCATGGATGTGGTTGAGACCATTGAAACTGTGGGCT CTCCGAGTGGCAAAACATCAAAGAAAGTGGTTATTGCTGACTGTGGCCAGCTTTAGATTG ATCATGCTTCTAGTATGAGCGTCTGTTTTTCAAATAAATTCCTTAAGGTCTAGTTTAGGC TATGAAGCAAATGTATGTGGAGCTGTCTATCTACAGTAATTGTGACTTTGGATTACTATC ACCCCCTTTTGGTCAAGGAGCTCTTTCTTGTACTCTTTGGCTATTAAAAATGCTACAGCA GTGATTTGCTTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q39613 |
Definition |
sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus |
Align length |
57 |
Score (bit) |
99.4 |
E-value |
5.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK954860|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0021_J04, 5' (374 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Cath... 99 5e-21 sp|P29117|PPIF_RAT Peptidyl-prolyl cis-trans isomerase, mitochon... 98 1e-20 sp|Q99KR7|PPIF_MOUSE Peptidyl-prolyl cis-trans isomerase, mitoch... 98 1e-20 sp|P34790|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-... 97 2e-20 sp|P30405|PPIF_HUMAN Peptidyl-prolyl cis-trans isomerase, mitoch... 97 2e-20 sp|P24525|CYPH_BRANA Peptidyl-prolyl cis-trans isomerase OS=Bras... 97 2e-20 sp|Q0ZQK3|PPIA_SAGOE Peptidyl-prolyl cis-trans isomerase A OS=Sa... 96 4e-20 sp|Q6DTV9|PPIA_AOTTR Peptidyl-prolyl cis-trans isomerase A OS=Ao... 96 4e-20 sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-... 96 7e-20 sp|O49886|CYPH_LUPLU Peptidyl-prolyl cis-trans isomerase OS=Lupi... 95 9e-20 sp|Q5R8S7|PPIA_PONPY Peptidyl-prolyl cis-trans isomerase A OS=Po... 95 1e-19 sp|P62941|PPIA_PAPAN Peptidyl-prolyl cis-trans isomerase A OS=Pa... 95 1e-19 sp|Q0ZQL1|PPIA_PANTR Peptidyl-prolyl cis-trans isomerase A OS=Pa... 95 1e-19 sp|Q0ZQL2|PPIA_PANPA Peptidyl-prolyl cis-trans isomerase A OS=Pa... 95 1e-19 sp|P62940|PPIA_MACMU Peptidyl-prolyl cis-trans isomerase A OS=Ma... 95 1e-19 sp|Q0ZQK6|PPIA_HYLSY Peptidyl-prolyl cis-trans isomerase A OS=Hy... 95 1e-19 sp|Q0ZQK7|PPIA_HYLLE Peptidyl-prolyl cis-trans isomerase A OS=Hy... 95 1e-19 sp|Q0ZQK8|PPIA_HYLLA Peptidyl-prolyl cis-trans isomerase A OS=Hy... 95 1e-19 sp|P62937|PPIA_HUMAN Peptidyl-prolyl cis-trans isomerase A OS=Ho... 95 1e-19 sp|Q0ZQL0|PPIA_GORGO Peptidyl-prolyl cis-trans isomerase A OS=Go... 95 1e-19 sp|P62938|PPIA_CERAE Peptidyl-prolyl cis-trans isomerase A OS=Ce... 95 1e-19 sp|P52011|CYP3_CAEEL Peptidyl-prolyl cis-trans isomerase 3 OS=Ca... 94 2e-19 sp|Q38900|CP19A_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-... 94 2e-19 sp|P62936|PPIA_PIG Peptidyl-prolyl cis-trans isomerase A OS=Sus ... 94 2e-19 sp|P62935|PPIA_BOVIN Peptidyl-prolyl cis-trans isomerase A OS=Bo... 94 2e-19 sp|P21568|CYPH_SOLLC Peptidyl-prolyl cis-trans isomerase OS=Sola... 94 2e-19 sp|P34887|CYPH_ALLCE Peptidyl-prolyl cis-trans isomerase OS=Alli... 94 2e-19 sp|Q9TTC6|PPIA_RABIT Peptidyl-prolyl cis-trans isomerase A OS=Or... 94 3e-19 sp|P17742|PPIA_MOUSE Peptidyl-prolyl cis-trans isomerase A OS=Mu... 94 3e-19 sp|P14851|PPIA_CRIGR Peptidyl-prolyl cis-trans isomerase A OS=Cr... 94 3e-19
>sp|Q39613|CYPH_CATRO Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1 Length = 172
Score = 99.4 bits (246), Expect = 5e-21 Identities = 44/57 (77%), Positives = 52/57 (91%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CT +T+WLDGKHVVFG+VVEGMDVV+ IE VGS SG+T+KKVV+ DCGQL Sbjct: 115 NGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQL 171
>sp|P29117|PPIF_RAT Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2 Length = 206
Score = 98.2 bits (243), Expect = 1e-20 Identities = 44/57 (77%), Positives = 50/57 (87%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CT++T WLDGKHVVFG V EGMDVV+ IE+ GS SGKTSKK+VI DCGQL Sbjct: 149 NGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQL 205
>sp|Q99KR7|PPIF_MOUSE Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1 Length = 206
Score = 98.2 bits (243), Expect = 1e-20 Identities = 44/57 (77%), Positives = 50/57 (87%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CT++T WLDGKHVVFG V EGMDVV+ IE+ GS SGKTSKK+VI DCGQL Sbjct: 149 NGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQL 205
>sp|P34790|CP18C_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1 Length = 172
Score = 97.4 bits (241), Expect = 2e-20 Identities = 44/57 (77%), Positives = 51/57 (89%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CTV+T WLDGKHVVFG+VVEG+DVV+ IE VGS SGK +K VV+ADCGQL Sbjct: 115 NGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQL 171
>sp|P30405|PPIF_HUMAN Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1 Length = 207
Score = 97.1 bits (240), Expect = 2e-20 Identities = 43/57 (75%), Positives = 50/57 (87%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CT++T WLDGKHVVFG V EGMDVV+ IE+ GS SG+TSKK+VI DCGQL Sbjct: 150 NGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQL 206
>sp|P24525|CYPH_BRANA Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2 Length = 171
Score = 97.1 bits (240), Expect = 2e-20 Identities = 45/57 (78%), Positives = 49/57 (85%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CT +T WLDGKHVVFG+VVEGMDVV IE VGS SG+TSKKVV DCGQL Sbjct: 115 NGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171
>sp|Q0ZQK3|PPIA_SAGOE Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3 Length = 164
Score = 96.3 bits (238), Expect = 4e-20 Identities = 42/57 (73%), Positives = 51/57 (89%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CTV+T+WLDGKHVVFG+V EGM++VE +E GS +GKTSKK+ IADCGQL Sbjct: 108 NGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>sp|Q6DTV9|PPIA_AOTTR Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3 Length = 164
Score = 96.3 bits (238), Expect = 4e-20 Identities = 42/57 (73%), Positives = 51/57 (89%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CTV+T+WLDGKHVVFG+V EGM++VE +E GS +GKTSKK+ IADCGQL Sbjct: 108 NGSQFFICTVKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164
>sp|Q9SKQ0|CP19B_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1 Length = 174
Score = 95.5 bits (236), Expect = 7e-20 Identities = 42/57 (73%), Positives = 51/57 (89%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CTV+T WLDGKHVVFG+VVEG+DVV+ IE +GS SGK +K VVIADCG++ Sbjct: 116 NGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEI 172
>sp|O49886|CYPH_LUPLU Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1 Length = 172
Score = 95.1 bits (235), Expect = 9e-20 Identities = 43/57 (75%), Positives = 50/57 (87%) Frame = +3
Query: 3 NGSQFFLCTVQTQWLDGKHVVFGRVVEGMDVVETIETVGSPSGKTSKKVVIADCGQL 173 NGSQFF+CT +T+WLDGKHVVFG+V+EGM+VV IE VGS SGKTS+ V IADCGQL Sbjct: 115 NGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQL 171
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3FNQ1 |
Definition |
tr|B3FNQ1|B3FNQ1_HEVBR Cyclophilin OS=Hevea brasiliensis |
Align length |
57 |
Score (bit) |
103.0 |
E-value |
3.0e-21 |
Report |
|