DK954887
Clone id TST39A01NGRL0021_K08
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_K08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
TGAACTTTGAGGTCTCTTCGCATTGACGTTAAATCTCTCTCTTTCTCTCTCTCACCATTT
TGCTTCGTGAGCAAATTTAGGTTGGCCATGGCGGAGTCCGGATCTGCAAGCAACAGCGGC
ACCCCACCTCCTTCCTTGTCTTCGTCTGCTGCAGTGCCACCTGACTGGGAGGTGCTCACT
ATGTCCATGTCCGCTTCGGCTGTGGGAAAACCTGGCGACAGCGTGTCTGAGATTTTTAAC
CCTCAGTTGGAGAATTCTTCCAACCCTAGTCTGGCTGAGGGTGATTTTTCTTCTGGTATG
TGGACGGACCCAAGTGCAAGTAGAGACGAGTCTTTCACAGCTGGCTGGAAACCCCACCTT
TCTGCTTCTTCAGATCTGTATGGATATGTTGCAGAACAAAAGCACCAAGAAGATCCGTCC
TTGCCCAGTGAAGGTGCAGAGACTTATTTTGACAGCAATGCATCCATAAATATGGCAGAG
GGCTTGCTTGTGTCAGAAATTGTCGATGGAGATTTGGAAGAGAGAGTTCTTGCTCATGAC
CTTTCTATGGATGGAGTCAAGACTAGTGATGAAGCCTTGAAAGATAAGGTCAAGCGCAAA
GGGCCCAAACGCCCCAATAGGTCT
■■Homology search results ■■ -
sp_hit_id Q47BH8
Definition sp|Q47BH8|ILVC_DECAR Ketol-acid reductoisomerase OS=Dechloromonas aromatica (strain RCB)
Align length 114
Score (bit) 33.5
E-value 0.91
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954887|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_K08, 5'
(624 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q47BH8|ILVC_DECAR Ketol-acid reductoisomerase OS=Dechloromona... 33 0.91
sp|P0A5F6|Y1866_MYCBO Uncharacterized protein Mb1866c OS=Mycobac... 33 1.5
sp|P0A5F5|Y1835_MYCTU Uncharacterized protein Rv1835c/MT1883 OS=... 33 1.5
sp|Q5RES4|MED1_PONAB Mediator of RNA polymerase II transcription... 32 2.0
sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription... 32 2.0
sp|P59900|EMIL3_MOUSE EMILIN-3 OS=Mus musculus GN=Emilin3 PE=2 SV=1 32 2.7
sp|A5V3W3|ILVC_SPHWW Ketol-acid reductoisomerase OS=Sphingomonas... 32 3.4
sp|Q0BS26|ILVC_GRABC Ketol-acid reductoisomerase OS=Granulibacte... 32 3.4
sp|Q9NIV1|E2AK3_DROME Eukaryotic translation initiation factor 2... 32 3.5
sp|A1KUZ8|ILVC_NEIMF Ketol-acid reductoisomerase OS=Neisseria me... 31 4.5
sp|Q9JYI2|ILVC_NEIMB Ketol-acid reductoisomerase OS=Neisseria me... 31 4.5
sp|Q9JTI3|ILVC_NEIMA Ketol-acid reductoisomerase OS=Neisseria me... 31 4.5
sp|A9M177|ILVC_NEIM0 Ketol-acid reductoisomerase OS=Neisseria me... 31 4.5
sp|Q5F7E5|ILVC_NEIG1 Ketol-acid reductoisomerase OS=Neisseria go... 31 4.5
sp|Q2NAU8|ILVC_ERYLH Ketol-acid reductoisomerase OS=Erythrobacte... 31 4.5
sp|Q7P0H9|ILVC_CHRVO Ketol-acid reductoisomerase OS=Chromobacter... 31 4.5
sp|Q5UQP8|YL454_MIMIV Uncharacterized protein L454 OS=Acanthamoe... 31 4.5
sp|Q30T61|ILVC_SULDN Ketol-acid reductoisomerase OS=Sulfurimonas... 31 5.9
sp|Q6N869|ILVC_RHOPA Ketol-acid reductoisomerase OS=Rhodopseudom... 31 5.9
sp|Q1MED4|ILVC_RHIL3 Ketol-acid reductoisomerase OS=Rhizobium le... 31 5.9
sp|Q2K6M2|ILVC_RHIEC Ketol-acid reductoisomerase OS=Rhizobium et... 31 5.9
sp|Q9WUZ9|ENTP5_MOUSE Ectonucleoside triphosphate diphosphohydro... 31 5.9
sp|Q9KJ75|PTMCB_STRMU PTS system mannitol-specific EIICB compone... 31 5.9
sp|A6UAW6|ILVC_SINMW Ketol-acid reductoisomerase OS=Sinorhizobiu... 30 7.7
sp|Q2IUS3|ILVC_RHOP2 Ketol-acid reductoisomerase OS=Rhodopseudom... 30 7.7
sp|Q52955|ILVC_RHIME Ketol-acid reductoisomerase OS=Rhizobium me... 30 7.7
sp|A7HVZ2|ILVC_PARL1 Ketol-acid reductoisomerase OS=Parvibaculum... 30 7.7
sp|P42229|STA5A_HUMAN Signal transducer and activator of transcr... 30 7.7
sp|P49116|NR2C2_HUMAN Nuclear receptor subfamily 2 group C membe... 30 7.7

>sp|Q47BH8|ILVC_DECAR Ketol-acid reductoisomerase OS=Dechloromonas
aromatica (strain RCB) GN=ilvC PE=3 SV=1
Length = 338

Score = 33.5 bits (75), Expect = 0.91
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Frame = -2

Query: 428 LGKDGSSWCFCSATYPYRSEEAERWGFQPAVK--DSSLLALGSVHIP----EEKSPSARL 267
L KDG+SW A E A+ AVK D ++ L +IP EE +P+ +
Sbjct: 46 LRKDGASWKKAEAAGLKVEEIAK------AVKGADVVMILLPDENIPQVYNEEVAPNLKK 99

Query: 266 GLEEFSN*GLKISDTLSPGFPTAEADMDIVSTSQSGGTAADEDKEGGGVPLLLA 105
G G + + P A+ D+ +V+ G T E +GGGVP L+A
Sbjct: 100 GAALAFAHGFNVH--YNQVVPRADVDVIMVAPKGPGHTVRSEYLKGGGVPSLIA 151


>sp|P0A5F6|Y1866_MYCBO Uncharacterized protein Mb1866c
OS=Mycobacterium bovis GN=Mb1866c PE=4 SV=1
Length = 628

Score = 32.7 bits (73), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -3

Query: 496 LTQASPLPYLWMHCCQNKSLHLHWARTDLLGAFVLQHIHTDLKKQKGGVSS 344
LT A+ LP + +SL L W LLG LQHI D ++++ V+S
Sbjct: 52 LTSAARLPAILHQTRYYRSLQLRWPLRMLLGGKPLQHIAADKRRRRRFVAS 102


>sp|P0A5F5|Y1835_MYCTU Uncharacterized protein Rv1835c/MT1883
OS=Mycobacterium tuberculosis GN=Rv1835c PE=4 SV=1
Length = 628

Score = 32.7 bits (73), Expect = 1.5
Identities = 19/51 (37%), Positives = 27/51 (52%)
Frame = -3

Query: 496 LTQASPLPYLWMHCCQNKSLHLHWARTDLLGAFVLQHIHTDLKKQKGGVSS 344
LT A+ LP + +SL L W LLG LQHI D ++++ V+S
Sbjct: 52 LTSAARLPAILHQTRYYRSLQLRWPLRMLLGGKPLQHIAADKRRRRRFVAS 102


>sp|Q5RES4|MED1_PONAB Mediator of RNA polymerase II transcription
subunit 1 OS=Pongo abelii GN=MED1 PE=2 SV=1
Length = 1581

Score = 32.3 bits (72), Expect = 2.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1

Query: 208 KPGDSVSEIFNPQLENSSN--PSLAEGDFSSGMWTDPSASRDESFTAGWKPHLSASSDLY 381
KPG+S E PQ+ +S N L G PS S+ ++T +L + S+
Sbjct: 1412 KPGESSGEGLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYT---PQNLDSESESG 1468

Query: 382 GYVAEQKHQEDPS 420
+AE+ +Q PS
Sbjct: 1469 SSIAEKSYQNSPS 1481


>sp|Q15648|MED1_HUMAN Mediator of RNA polymerase II transcription
subunit 1 OS=Homo sapiens GN=MED1 PE=1 SV=4
Length = 1581

Score = 32.3 bits (72), Expect = 2.0
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +1

Query: 208 KPGDSVSEIFNPQLENSSN--PSLAEGDFSSGMWTDPSASRDESFTAGWKPHLSASSDLY 381
KPG+S E PQ+ +S N L G PS S+ ++T +L + S+
Sbjct: 1412 KPGESSGEGLRPQMASSKNYGSPLISGSTPKHERGSPSHSKSPAYT---PQNLDSESESG 1468

Query: 382 GYVAEQKHQEDPS 420
+AE+ +Q PS
Sbjct: 1469 SSIAEKSYQNSPS 1481


>sp|P59900|EMIL3_MOUSE EMILIN-3 OS=Mus musculus GN=Emilin3 PE=2 SV=1
Length = 758

Score = 32.0 bits (71), Expect = 2.7
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1

Query: 310 PSASRDESFTAGWKPHL--SASSDLYGYVAEQKHQEDPSLPSEGAETY 447
PSASR +T GW+P L L YV H+ + EGAE+Y
Sbjct: 33 PSASRYSLYTTGWRPRLRPGPHKSLCAYVV---HRNVTCVLQEGAESY 77


>sp|A5V3W3|ILVC_SPHWW Ketol-acid reductoisomerase OS=Sphingomonas
wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=ilvC
PE=3 SV=1
Length = 339

Score = 31.6 bits (70), Expect = 3.4
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2

Query: 206 PTAEADMDIVSTSQSGGTAADEDKEGGGVPLLLADPDSAMAN 81
P A+ D+ +++ G T E + GGGVP L+A A N
Sbjct: 119 PRADIDVFMIAPKGPGHTVRSEYQRGGGVPCLIAIAQDASGN 160


>sp|Q0BS26|ILVC_GRABC Ketol-acid reductoisomerase OS=Granulibacter
bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=ilvC
PE=3 SV=1
Length = 339

Score = 31.6 bits (70), Expect = 3.4
Identities = 25/84 (29%), Positives = 36/84 (42%)
Frame = -2

Query: 332 DSSLLALGSVHIPEEKSPSARLGLEEFSN*GLKISDTLSPGFPTAEADMDIVSTSQSGGT 153
D S L H+ P A L GL I L P ++ D+ +++ G T
Sbjct: 83 DESQADLYREHLHANLRPGAALAFAH----GLNIHFNLIE--PRSDIDVFMIAPKGPGHT 136

Query: 152 AADEDKEGGGVPLLLADPDSAMAN 81
E ++GGGVP L+A +A N
Sbjct: 137 VRGEYQKGGGVPCLVAVAQNASGN 160


>sp|Q9NIV1|E2AK3_DROME Eukaryotic translation initiation factor
2-alpha kinase OS=Drosophila melanogaster GN=PEK PE=1
SV=2
Length = 1162

Score = 31.6 bits (70), Expect = 3.5
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Frame = +1

Query: 346 WKPHLSASSDLYGYVAEQKHQEDPSLPSEGAET-------YFDSNASINMAEGLLVSEIV 504
WKP ++S L V +K QEDP + +EGA Y D N ++ L SE V
Sbjct: 410 WKPISASSKSL---VIFRKDQEDPEMIAEGAVAQGGELVPYDDENFAVAAQSVLNASEFV 466

Query: 505 DGD 513
+G+
Sbjct: 467 NGN 469


>sp|A1KUZ8|ILVC_NEIMF Ketol-acid reductoisomerase OS=Neisseria
meningitidis serogroup C / serotype 2a (strain ATCC
700532 / FAM18) GN=ilvC PE=3 SV=1
Length = 337

Score = 31.2 bits (69), Expect = 4.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2

Query: 206 PTAEADMDIVSTSQSGGTAADEDKEGGGVPLLLA 105
P A+ D+ +V+ G T E K GGGVP L+A
Sbjct: 117 PRADLDVIMVAPKGPGHTVRSEYKRGGGVPSLIA 150


tr_hit_id B7G8I4
Definition tr|B7G8I4|B7G8I4_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 120
Score (bit) 38.1
E-value 0.43
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK954887|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_K08, 5'
(624 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7G8I4|B7G8I4_PHATR Predicted protein OS=Phaeodactylum tricor... 38 0.43
tr|Q6MLN0|Q6MLN0_BDEBA Putative uncharacterized protein OS=Bdell... 37 0.96
tr|Q2R4H9|Q2R4H9_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 35 2.8
tr|B4LB61|B4LB61_DROVI GJ12813 OS=Drosophila virilis GN=GJ12813 ... 35 2.8

>tr|B7G8I4|B7G8I4_PHATR Predicted protein OS=Phaeodactylum
tricornutum CCAP 1055/1 GN=PHATRDRAFT_48827 PE=4 SV=1
Length = 341

Score = 38.1 bits (87), Expect = 0.43
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = +1

Query: 187 MSASAVGKPGDSVSEIFNPQLENSSNPSLAEGDF----SSGMWTDPSASRDESFTAGWKP 354
++AS G+PG + S I N L+N SNPS D S DPS D++ +P
Sbjct: 218 VNASTGGRPGSN-SSISNGALDNLSNPSAPSQDLPDSDSPSDSVDPSVDSDDN-----RP 271

Query: 355 HLSASSDLYGYVAEQKHQEDPSLPSEGAETYFDSNASINMAEGLLVSEIVDGDLEERVLA 534
S D + + + D S+ S T +N I + L SE+ G +VL+
Sbjct: 272 D---SQDSVDSIDDTRDSRD-SVGSSNTATSTATNTEITTSASALTSEVSSGTFSTQVLS 327


>tr|Q6MLN0|Q6MLN0_BDEBA Putative uncharacterized protein
OS=Bdellovibrio bacteriovorus GN=Bd1977 PE=4 SV=1
Length = 488

Score = 37.0 bits (84), Expect = 0.96
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Frame = +1

Query: 307 DPSASRDESFTAGWKPHLSASSDLYGYVAEQK-----HQEDPSLPSEGAETYFDSN---- 459
+P ++RD+++ + L+A + L AE+K + + P++ +E E +
Sbjct: 353 EPVSTRDQNWLTKYDEALAAGTTLVAMAAEKKAAALENMKKPAVTAENGEEISEEGSEET 412

Query: 460 --ASINMAEGLLVSEIVDGD---LEERVLAHDLSMDGVKTSDEAL 579
AS++ +E + E DGD LEE V+A D D + SD+ L
Sbjct: 413 LEASMDESESESLDESTDGDDSELEEAVVAFDNDEDLDEASDDQL 457


>tr|Q2R4H9|Q2R4H9_ORYSJ Expressed protein OS=Oryza sativa subsp.
japonica GN=Os11g0474100 PE=4 SV=1
Length = 126

Score = 35.4 bits (80), Expect = 2.8
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Frame = -2

Query: 296 PEEKSPSARLGLEEFSN*GLKISDTLSPGFPTAEADMDIVSTSQSGGTAADEDKEGGGVP 117
P + RL + + + G + + LSP P D D +T SGG +E+K+ +P
Sbjct: 6 PTRRRRQHRLCVWGWGDGGGEAAARLSP-LPATRNDDDDAATDASGGGGTEEEKQAARLP 64

Query: 116 LLLA---DPDSAMANLNLLTKQNGEREKERD--LTSMRRD 12
LLLA D D+A + +G R + D L RRD
Sbjct: 65 LLLATRNDDDNAACG-----EASGRRRRAGDDCLERCRRD 99


>tr|B4LB61|B4LB61_DROVI GJ12813 OS=Drosophila virilis GN=GJ12813
PE=4 SV=1
Length = 940

Score = 35.4 bits (80), Expect = 2.8
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +1

Query: 304 TDPSASRDESFTAGWKPHLSASSDLYGYVAEQKHQEDPSLPSEGAETYFDSNASIN 471
T+ +A+ D FT G KP +SD + YV +Q+ E+ + + + + SNAS+N
Sbjct: 562 TNSAAAVDAVFTKGTKPR---ASDSWDYVYKQRASEESMIMRRRSNSSYSSNASVN 614