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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954896
Clone id TST39A01NGRL0021_K17
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_K17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATGAAAGGCATGCAGAGCATGAGAACTGCCCGCAGGAGATGCAGCGCTTGAAGCAGTTG
ATAGCTCAGTATCAAGAACAAGTTAGGACTGGACATCGGTTTACTTCTTCGATGAACGAG
CATCTTCGCAAAGCTCAAGAGGGATCATCCATGCCAGGCCGGTTTCATCCAGATGTGTTT
TGAGGAAACTTCTATACCGGGAAGAATTCTGCCTTTATTTTGTTTGCCAGGGAGGGGTAA
CCCGTCACAAATTGGGCTTTTGTTTGAGTTGAGGTAGTTGCTGCATCAGGTATTGCCTGA
TGCTTTCTGTATAAAATTCCTGCACTCTTTCAAAGCTAATTTGCTGTGAAGTTGGATAAA
AAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q497K7
Definition sp|Q497K7|YB028_MOUSE Transmembrane protein ENSP00000343375 homolog OS=Mus musculus
Align length 74
Score (bit) 32.7
E-value 0.58
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954896|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_K17, 5'
         (357 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q497K7|YB028_MOUSE Transmembrane protein ENSP00000343375 homo...    33   0.58 
sp|A2AKB9|WDR32_MOUSE WD repeat-containing protein 32 OS=Mus mus...    30   5.0  
sp|Q8ILR9|HLRR1_PLAF7 LRR domain-containing protein PF14_0175 OS...    29   6.5  

>sp|Q497K7|YB028_MOUSE Transmembrane protein ENSP00000343375 homolog
           OS=Mus musculus PE=2 SV=2
          Length = 211

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +1

Query: 10  HAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF*GN 189
           H E+E   Q  + ++QL  Q Q+Q    H+F+ S+ + L    + +     F+  +F   
Sbjct: 122 HQENERQRQHEEVMEQLQQQQQQQQALPHQFSGSLQDLLLPQNQFAMF---FYCFIFIHI 178

Query: 190 FYTGKNSAFILFAR 231
            Y  K + F LF++
Sbjct: 179 IYVAKETVFFLFSK 192


>sp|A2AKB9|WDR32_MOUSE WD repeat-containing protein 32 OS=Mus
           musculus GN=Wdr32 PE=2 SV=1
          Length = 566

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +3

Query: 87  DWTSVYFFDERASSQSSRGIIHARPVSSRCVLRKLLYREE 206
           +WT VY F E A           RPVS RC LR   Y EE
Sbjct: 444 EWTCVYEFQEGAP---------VRPVSPRCSLRLTHYIEE 474


>sp|Q8ILR9|HLRR1_PLAF7 LRR domain-containing protein PF14_0175
            OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0175 PE=4
            SV=1
          Length = 4662

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 273  LNSNKSPICDGLPLPGKQNKGRI 205
            ++ NK+PICD + LP KQ  G I
Sbjct: 3498 MSYNKTPICDSVELPIKQMSGNI 3520
tr_hit_id A9T5N7
Definition tr|A9T5N7|A9T5N7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 60
Score (bit) 82.4
E-value 1.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954896|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_K17, 5'
         (357 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T5N7|A9T5N7_PHYPA Predicted protein OS=Physcomitrella paten...    82   1e-14
tr|A9U3T0|A9U3T0_PHYPA Predicted protein OS=Physcomitrella paten...    80   5e-14
tr|A9PBC1|A9PBC1_POPTR Putative uncharacterized protein OS=Popul...    74   4e-12
tr|A9NV65|A9NV65_PICSI Putative uncharacterized protein OS=Picea...    74   5e-12
tr|A9PHI2|A9PHI2_POPTR Putative uncharacterized protein OS=Popul...    73   8e-12
tr|A9RID7|A9RID7_PHYPA Predicted protein OS=Physcomitrella paten...    72   1e-11
tr|A7PF87|A7PF87_VITVI Chromosome chr11 scaffold_13, whole genom...    71   3e-11
tr|Q0J3G0|Q0J3G0_ORYSJ Os09g0119100 protein OS=Oryza sativa subs...    70   5e-11
tr|A3BW42|A3BW42_ORYSJ Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|A2YYJ3|A2YYJ3_ORYSI Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|B6TCB4|B6TCB4_MAIZE CUE domain containing protein OS=Zea mays...    68   2e-10
tr|B4FYB7|B4FYB7_MAIZE Putative uncharacterized protein OS=Zea m...    68   2e-10
tr|B6TIC6|B6TIC6_MAIZE CUE domain containing protein OS=Zea mays...    67   4e-10
tr|Q94K99|Q94K99_ARATH Putative uncharacterized protein At5g3244...    66   1e-09
tr|Q8H1Q3|Q8H1Q3_ARATH Putative uncharacterized protein At5g3244...    66   1e-09
tr|Q67WV6|Q67WV6_ORYSJ Os06g0642900 protein OS=Oryza sativa subs...    65   2e-09
tr|B8B0S4|B8B0S4_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|Q6H880|Q6H880_ORYSJ Putative uncharacterized protein OJ1572_F...    65   2e-09
tr|Q0E3B5|Q0E3B5_ORYSJ Os02g0184500 protein OS=Oryza sativa subs...    65   2e-09
tr|A3A3V8|A3A3V8_ORYSJ Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A2X1Q4|A2X1Q4_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A2X1P9|A2X1P9_ORYSI Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|A7PNK4|A7PNK4_VITVI Chromosome chr8 scaffold_23, whole genome...    64   5e-09
tr|A5C5J6|A5C5J6_VITVI Putative uncharacterized protein OS=Vitis...    64   5e-09
tr|B6T3P8|B6T3P8_MAIZE CUE domain containing protein OS=Zea mays...    62   1e-08
tr|B4G1V5|B4G1V5_MAIZE Putative uncharacterized protein OS=Zea m...    62   1e-08
tr|A7QIK8|A7QIK8_VITVI Chromosome chr9 scaffold_104, whole genom...    61   2e-08
tr|A5B8J1|A5B8J1_VITVI Putative uncharacterized protein OS=Vitis...    61   2e-08
tr|B8AP74|B8AP74_ORYSI Putative uncharacterized protein OS=Oryza...    60   7e-08
tr|Q6UUK2|Q6UUK2_ORYSJ Putative uncharacterized protein (Putativ...    55   1e-06

>tr|A9T5N7|A9T5N7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191879 PE=4 SV=1
          Length = 287

 Score = 82.4 bits (202), Expect = 1e-14
 Identities = 39/60 (65%), Positives = 45/60 (75%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HERH +HE    E+Q +KQL+ QYQEQVRT      S+  HLR+AQEGSSMPGRFHPDVF
Sbjct: 228 HERHQDHEGRVLELQHVKQLLTQYQEQVRTLELNNYSLTMHLRQAQEGSSMPGRFHPDVF 287


>tr|A9U3T0|A9U3T0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_228060 PE=4 SV=1
          Length = 285

 Score = 80.1 bits (196), Expect = 5e-14
 Identities = 38/60 (63%), Positives = 46/60 (76%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  +HE   QE+Q++KQL+AQYQEQ RT      S++ HLR+AQEGSSMPG FHPDVF
Sbjct: 226 HERQKQHEVRAQELQQMKQLLAQYQEQARTLELNNYSLSLHLRQAQEGSSMPGHFHPDVF 285


>tr|A9PBC1|A9PBC1_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 286

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 34/60 (56%), Positives = 46/60 (76%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  E+E   QEMQ+LKQL++QYQ+Q+RT      ++  HL++AQ+ SS+PGRFHPDVF
Sbjct: 227 HERQKEYEERNQEMQQLKQLVSQYQDQLRTLEVNNYALTLHLKQAQQSSSIPGRFHPDVF 286


>tr|A9NV65|A9NV65_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 289

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 34/60 (56%), Positives = 44/60 (73%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  EH+    E+Q LKQL++QYQEQ+RT      ++  HLR+AQE +S+PGRFHPDVF
Sbjct: 230 HERQKEHDERGNELQNLKQLLSQYQEQLRTLQVNNYALTLHLRQAQESTSIPGRFHPDVF 289


>tr|A9PHI2|A9PHI2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 285

 Score = 72.8 bits (177), Expect = 8e-12
 Identities = 33/60 (55%), Positives = 45/60 (75%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  E E   QE+Q+LKQL++QYQ+Q+RT      ++  HL++AQ+ SS+PGRFHPDVF
Sbjct: 226 HERQKEFEESSQELQQLKQLVSQYQDQLRTLEVNNYALTLHLKQAQQSSSIPGRFHPDVF 285


>tr|A9RID7|A9RID7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_175160 PE=4 SV=1
          Length = 135

 Score = 72.4 bits (176), Expect = 1e-11
 Identities = 33/60 (55%), Positives = 43/60 (71%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  EHE   +E+Q+ KQ++ QYQEQVR+      ++  HLR AQ+ SSMPGRFHPDV+
Sbjct: 76  HERQQEHEGRTRELQQAKQVLGQYQEQVRSLELNNYTLRMHLRMAQDASSMPGRFHPDVY 135


>tr|A7PF87|A7PF87_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016953001
           PE=4 SV=1
          Length = 283

 Score = 70.9 bits (172), Expect = 3e-11
 Identities = 33/60 (55%), Positives = 43/60 (71%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  E E   QE+Q LKQ++ QYQEQ+RT      +++ HLR+AQ+ SS+PG FHPDVF
Sbjct: 224 HERQKESEERNQELQHLKQVVTQYQEQLRTLEVNNYALSMHLRQAQQSSSIPGHFHPDVF 283


>tr|Q0J3G0|Q0J3G0_ORYSJ Os09g0119100 protein OS=Oryza sativa subsp.
           japonica GN=Os09g0119100 PE=2 SV=1
          Length = 269

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 31/60 (51%), Positives = 45/60 (75%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  EH+   QE+Q+LKQL+AQYQEQ+R+      +++ HLR+AQ+ +S+PG FH D+F
Sbjct: 210 HERQKEHDGRNQEIQQLKQLVAQYQEQIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 269


>tr|A3BW42|A3BW42_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_027264 PE=4 SV=1
          Length = 282

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 31/60 (51%), Positives = 45/60 (75%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  EH+   QE+Q+LKQL+AQYQEQ+R+      +++ HLR+AQ+ +S+PG FH D+F
Sbjct: 223 HERQKEHDGRNQEIQQLKQLVAQYQEQIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 282


>tr|A2YYJ3|A2YYJ3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30417 PE=4 SV=1
          Length = 282

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 31/60 (51%), Positives = 45/60 (75%)
 Frame = +1

Query: 1   HERHAEHENCPQEMQRLKQLIAQYQEQVRTGHRFTSSMNEHLRKAQEGSSMPGRFHPDVF 180
           HER  EH+   QE+Q+LKQL+AQYQEQ+R+      +++ HLR+AQ+ +S+PG FH D+F
Sbjct: 223 HERQKEHDGRNQEIQQLKQLVAQYQEQIRSLEVNNYALSMHLRQAQQANSIPGHFHRDIF 282