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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954901
Clone id TST39A01NGRL0021_K22
Library
Length 543
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_K22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTCTTCTCCTCTGCAGATCTCCATCGCCATAGCCGCTCATCACTCCTCAGATTGTGTTGA
TATAGAGAAAGGTGGTTCAATGATTAGAGGCTCTACTAGATAAATTCAAGTGTTTTGCTG
AGAATATAGTGCATCATCAACTTATATGCCATGGCCATGGAGAGCTTTGCTACCCCTTAT
CCAGTAATCTTCCATGACGGTGAGCGGGAACATGACAAGGGACACATCGGTGTGCATTCT
GTGCTCACTTTCAAGCGGTTCCAGGCACTTTTAAGCCAAAAAGTCGGACTTCCTGCTGGC
CAAGTGTCAGCTGTGTTTGTATGTAGGCGCACAGTGAAGGATACTGATACGAAGCGGCAA
AAATTGCCCATCAATGAGAATACAAATTTCAACATCATCCTGAACCAGCACAATCCTAAG
TCTGAGAAGGACTGCCATTTTCTGGTGTCCATGAAGAAGTCAAAGAAGGAGCGAAAGGGA
AGCAGGAGGCGAAGTGCAGAAACAGACAATGGTGATGATGGTTCAGTCTCACCAAGGGGA
GAT
■■Homology search results ■■ -
sp_hit_id A8FPR6
Definition sp|A8FPR6|MEND_SHESH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase OS=Shewanella sediminis (strain HAW-EB3)
Align length 86
Score (bit) 33.5
E-value 0.68
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954901|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_K22, 5'
         (543 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8FPR6|MEND_SHESH 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    33   0.68 
sp|A8H9P4|MEND_SHEPA 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    32   2.0  
sp|P25280|YD3M_HERAU Uncharacterized 68.4 kDa protein in HgiDIIM...    32   2.6  
sp|Q75BF1|SET5_ASHGO Potential protein lysine methyltransferase ...    32   2.6  
sp|P01031|CO5_HUMAN Complement C5 OS=Homo sapiens GN=C5 PE=1 SV=4      31   3.4  
sp|A3QJ17|MEND_SHELP 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    30   7.6  
sp|Q8FRF9|Y802_COREF UPF0182 protein CE0802 OS=Corynebacterium e...    30   7.6  
sp|Q06676|FIT2A_YEAST Protein FIT2 homolog A OS=Saccharomyces ce...    30   7.6  
sp|Q8NGA5|O10H4_HUMAN Olfactory receptor 10H4 OS=Homo sapiens GN...    25   9.5  
sp|Q0HPY8|MEND_SHESR 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    30   9.9  
sp|Q0HDN7|MEND_SHESM 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    30   9.9  
sp|A0L2B4|MEND_SHESA 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    30   9.9  
sp|Q8E8T4|MEND_SHEON 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    30   9.9  
sp|Q49A88|CCD14_HUMAN Coiled-coil domain-containing protein 14 O...    30   9.9  

>sp|A8FPR6|MEND_SHESH
           2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
           carboxylate synthase OS=Shewanella sediminis (strain
           HAW-EB3) GN=menD PE=3 SV=1
          Length = 569

 Score = 33.5 bits (75), Expect = 0.68
 Identities = 19/86 (22%), Positives = 38/86 (44%)
 Frame = +1

Query: 133 IINLYAMAMESFATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSA 312
           + NLY   +E++ T  P++   G+R  +    G +  +      A  ++++ LP   ++ 
Sbjct: 86  VANLYPAIIEAWLTQVPLVVLSGDRPPELIDCGANQAIIQPALFAQYAKQINLPTPDIAI 145

Query: 313 VFVCRRTVKDTDTKRQKLPINENTNF 390
                 T+ D     Q LP++ N  F
Sbjct: 146 RPEALLTMLDEAISNQSLPVHINCMF 171


>sp|A8H9P4|MEND_SHEPA
           2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
           carboxylate synthase OS=Shewanella pealeana (strain ATCC
           700345 / ANG-SQ1) GN=menD PE=3 SV=2
          Length = 569

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 22/104 (21%), Positives = 46/104 (44%)
 Frame = +1

Query: 133 IINLYAMAMESFATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSA 312
           + NLY   +E++ T  P+I   G+R  +    G +  +      A  ++++ LP   ++ 
Sbjct: 86  VANLYPAVIEAWLTHVPLIVLSGDRPPELIDCGANQAIIQPAIFAQYAKQINLPTPDLNI 145

Query: 313 VFVCRRTVKDTDTKRQKLPINENTNFNIILNQHNPKSEKDCHFL 444
                 ++ D     Q  P++ N  +   L  + PK + + H+L
Sbjct: 146 APQALLSLLDEAICNQSQPVHINCMYREPLYPNEPKVDFE-HYL 188


>sp|P25280|YD3M_HERAU Uncharacterized 68.4 kDa protein in HgiDIIM
           3'region OS=Herpetosiphon aurantiacus PE=4 SV=1
          Length = 611

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
 Frame = +1

Query: 115 LLRI*CIINLYAMAMESFATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLP 294
           +L I  I N+  +       P+  I H G+ E      G+ S +T  R  ++  + + + 
Sbjct: 100 ILAIFGIANIAEVYSCKDGVPHGFIIHKGDIER-----GISSDVTLYRPSSVPQEALSIE 154

Query: 295 AGQV-------SAVFVCRRTVKDTDTKRQKLPINENTNFNIILNQHNPKSEKDCHFL 444
           +G         S++    +T++ TD  R+   IN N NF++I+N + P ++ D  +L
Sbjct: 155 SGTKIILREIKSSIGNAEKTLR-TDLARRFTIINNNCNFSVIIN-NTPINDNDRDYL 209


>sp|Q75BF1|SET5_ASHGO Potential protein lysine methyltransferase
           SET5 OS=Ashbya gossypii GN=SET5 PE=3 SV=1
          Length = 488

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 21/59 (35%), Positives = 27/59 (45%)
 Frame = -2

Query: 464 FDFFMDTRKWQSFSDLGLCWFRMMLKFVFSLMGNFCRFVSVSFTVRLHTNTADTWPAGS 288
           F+ F     W S   +G+ + R  L     L GNF     VS  VRLH   ADT  +G+
Sbjct: 221 FEQFCKENTWHSAYSVGVMFARYYLHSDRRLQGNFESLAEVSQRVRLH--AADTMNSGA 277


>sp|P01031|CO5_HUMAN Complement C5 OS=Homo sapiens GN=C5 PE=1 SV=4
          Length = 1676

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 22/89 (24%), Positives = 36/89 (40%)
 Frame = +1

Query: 133 IINLYAMAMESFATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSA 312
           +I +Y       AT     + D +  +  GH+ + S   F+    L  Q   LP GQ   
Sbjct: 40  VIQVYGYTEAFDATISIKSYPDKKFSYSSGHVHLSSENKFQNSAILTIQPKQLPGGQNPV 99

Query: 313 VFVCRRTVKDTDTKRQKLPINENTNFNII 399
            +V    V    +K +++PI  +  F  I
Sbjct: 100 SYVYLEVVSKHFSKSKRMPITYDNGFLFI 128


>sp|A3QJ17|MEND_SHELP
           2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
           carboxylate synthase OS=Shewanella loihica (strain ATCC
           BAA-1088 / PV-4) GN=menD PE=3 SV=1
          Length = 567

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 20/83 (24%), Positives = 36/83 (43%)
 Frame = +1

Query: 133 IINLYAMAMESFATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSA 312
           + NLY   +E++ T  P+I   G+R  +    G +  +      A  +++V LP   ++ 
Sbjct: 86  VANLYPAIVEAWLTQVPLIVLSGDRPPELLGCGANQAIVQPAIFADYAKQVNLPTPDMAI 145

Query: 313 VFVCRRTVKDTDTKRQKLPINEN 381
                 T+ D      K PI+ N
Sbjct: 146 PPQALLTLLDESVANAKGPIHVN 168


>sp|Q8FRF9|Y802_COREF UPF0182 protein CE0802 OS=Corynebacterium
           efficiens GN=CE0802 PE=3 SV=2
          Length = 996

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 401 RMMLKFVFSLMGNFCRFVSVSFTVRLHTNTADTWPAGSPTF 279
           R++L  VF+L+  F  +++  FT+RL  +    + A SP F
Sbjct: 62  RIILFIVFALLAGFVTWLAGYFTIRLRPDDLTAFDAESPVF 102


>sp|Q06676|FIT2A_YEAST Protein FIT2 homolog A OS=Saccharomyces
           cerevisiae GN=YFT2 PE=1 SV=1
          Length = 274

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 13/57 (22%), Positives = 25/57 (43%)
 Frame = -2

Query: 380 FSLMGNFCRFVSVSFTVRLHTNTADTWPAGSPTFWLKSAWNRLKVSTECTPMCPLSC 210
           F + G+FC  VS+S  + +  +    +      FW+ + W R  ++  C  +    C
Sbjct: 173 FDISGHFCFLVSISMILWMELHLFSRFVQAEDMFWVVNKWVRACLAIVCAVLVIWIC 229


>sp|Q8NGA5|O10H4_HUMAN Olfactory receptor 10H4 OS=Homo sapiens
           GN=OR10H4 PE=2 SV=1
          Length = 316

 Score = 25.0 bits (53), Expect(2) = 9.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 419 LGLCWFRMMLKFVFSLMGNFCRFVSVSFTVRLHT 318
           L + +   +L F+F+L+GN     ++    RLHT
Sbjct: 25  LPILFLLYLLMFLFTLLGNLLIMATIWIEHRLHT 58



 Score = 22.3 bits (46), Expect(2) = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 246 EHRMHTDVSLVMFPLTVME 190
           EHR+HT + L +  L+V E
Sbjct: 53  EHRLHTPMYLFLCTLSVSE 71


>sp|Q0HPY8|MEND_SHESR
           2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
           carboxylate synthase OS=Shewanella sp. (strain MR-7)
           GN=menD PE=3 SV=1
          Length = 573

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 20/83 (24%), Positives = 33/83 (39%)
 Frame = +1

Query: 133 IINLYAMAMESFATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSA 312
           + NLY   +E++ T  P+I   G+R  +    G +  +      A  +Q+V LP      
Sbjct: 86  VANLYPAIVEAWLTHVPLIVLSGDRPPELLGCGANQAIVQPAIFANYAQQVNLPTPDAHI 145

Query: 313 VFVCRRTVKDTDTKRQKLPINEN 381
                 T  D     Q  P++ N
Sbjct: 146 APQMLLTTLDEAVANQTRPVHIN 168
tr_hit_id A9S9N0
Definition tr|A9S9N0|A9S9N0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 130
Score (bit) 179.0
E-value 7.0e-44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954901|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_K22, 5'
         (543 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9N0|A9S9N0_PHYPA Predicted protein OS=Physcomitrella paten...   179   7e-44
tr|Q259M7|Q259M7_ORYSA H0723C07.4 protein OS=Oryza sativa GN=H07...    37   0.89 
tr|Q0J8V2|Q0J8V2_ORYSJ Os04g0685700 protein OS=Oryza sativa subs...    37   0.89 
tr|B4FZM5|B4FZM5_MAIZE Putative uncharacterized protein OS=Zea m...    34   5.8  
tr|B4FH38|B4FH38_MAIZE Putative uncharacterized protein OS=Zea m...    34   5.8  
tr|B6TPS3|B6TPS3_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.9  

>tr|A9S9N0|A9S9N0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163644 PE=4 SV=1
          Length = 472

 Score =  179 bits (455), Expect = 7e-44
 Identities = 91/130 (70%), Positives = 101/130 (77%), Gaps = 1/130 (0%)
 Frame = +1

Query: 157 MESFATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSAVFVCRRTV 336
           MESFATPYPV+F DG++EHDKG +GVHSVL+FKRFQAL+SQK G+PA Q+SAVFVCRRT+
Sbjct: 1   MESFATPYPVVFCDGDQEHDKGVVGVHSVLSFKRFQALMSQKTGIPANQLSAVFVCRRTL 60

Query: 337 KDTDTKRQKLPINENTNFNIILNQHNPKSEKDCHFLVXXXXXXXXXXXXXXXXAETDNGD 516
           KDTD KRQKLPINENTNFNIILNQHNP  EKDCHFLV                AE +N D
Sbjct: 61  KDTD-KRQKLPINENTNFNIILNQHNPSREKDCHFLVSIKKSKKERKGTRKRNAEAENAD 119

Query: 517 D-GSVSPRGD 543
           D  S S RGD
Sbjct: 120 DEDSNSSRGD 129


>tr|Q259M7|Q259M7_ORYSA H0723C07.4 protein OS=Oryza sativa
           GN=H0723C07.4 PE=4 SV=1
          Length = 281

 Score = 36.6 bits (83), Expect = 0.89
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 169 ATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSAVFVCRRTVKDTD 348
           A   PV+F DG++  D G + V   L  ++ QA+++ +VGL   Q+ A     R      
Sbjct: 11  AAVLPVVFVDGDQTVDLGTVTVQPSLGVRKLQAVVADRVGLAPQQILASLARPR------ 64

Query: 349 TKRQKLPINENTN 387
            + +++P+ E T+
Sbjct: 65  -RARRVPLEEGTD 76


>tr|Q0J8V2|Q0J8V2_ORYSJ Os04g0685700 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0685700 PE=4 SV=1
          Length = 281

 Score = 36.6 bits (83), Expect = 0.89
 Identities = 21/73 (28%), Positives = 38/73 (52%)
 Frame = +1

Query: 169 ATPYPVIFHDGEREHDKGHIGVHSVLTFKRFQALLSQKVGLPAGQVSAVFVCRRTVKDTD 348
           A   PV+F DG++  D G + V   L  ++ QA+++ +VGL   Q+ A     R      
Sbjct: 11  AAVLPVVFVDGDQTVDLGTVTVQPSLGVRKLQAVVADRVGLAPQQILASLARPR------ 64

Query: 349 TKRQKLPINENTN 387
            + +++P+ E T+
Sbjct: 65  -RARRVPLEEGTD 76


>tr|B4FZM5|B4FZM5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 311

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 184 VIFHDGEREHDKGHIGVHSVLT-FKRFQALLSQKVGLPAGQVSAVFVCRRTVKDTDTKRQ 360
           V+F DGE+  D G + V   L+  KR QA+++ +VG+   Q+SA     R       + +
Sbjct: 18  VVFVDGEQSVDLGTVAVQPSLSGVKRLQAVVADRVGVAPYQISASLARPR-------RAR 70

Query: 361 KLPINENTN 387
           ++P+++ T+
Sbjct: 71  RVPLDDATD 79


>tr|B4FH38|B4FH38_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 311

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = +1

Query: 184 VIFHDGEREHDKGHIGVHSVLT-FKRFQALLSQKVGLPAGQVSAVFVCRRTVKDTDTKRQ 360
           V+F DGE+  D G + V   L+  KR QA+++ +VG+   Q+SA     R       + +
Sbjct: 18  VVFVDGEQSVDLGTVAVQPSLSGVKRLQAVVADRVGVAPYQISASLARPR-------RAR 70

Query: 361 KLPINENTN 387
           ++P+++ T+
Sbjct: 71  RVPLDDATD 79


>tr|B6TPS3|B6TPS3_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 265

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +1

Query: 181 PVIFHDGEREHDKGHIGVH-SVLTFKRFQALLSQKVGLPAGQVSA 312
           PV+F DGE+  D G + V  S    KR QA+++ +VG    Q+SA
Sbjct: 8   PVVFVDGEQSVDLGTVTVQPSFGGVKRLQAVVADRVGAAPHQISA 52