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NBDC - LSDB Archive
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DK954906
Clone id TST39A01NGRL0021_L03
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_L03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGGCGTTGCTCGATGTGCCCAGTTTGCAGACTTCCTCTGTACTCTCGTTCGAGAATCGTA
GCGCCATTGCCCCTTCTTCTCATTCCTCCCTGCGCTCCCGCCCGAAAGCCCACCTCCTCG
TCTTGTCTGCGTCGCAGCAACAGAGCTGGATTGATAGCATCGCCAAGAAACCCCTGCAGC
TTTCCGCCCTTCTTCCGTGGAAGAAGCCCTTAGATTCATCTTCCAGCGACTTCATGAATG
ATGAGAGCTTCTTCCATAGCTGTGATGATATCGAAGGTGTCGAAGAAATCCCAGACGTTT
CTGATCTCAGCTTGGCCTTTGAGGACACACACGTAGATAAGCCTCTGTTTTTCCCCTTTG
CATTTCTCAAAAATGCGTTCCAGGTGGAGTTTACCATTGAAGTTTTTCAGCTTCAACTTC
ATGTTTTGTTTGTGAGTTTATGTGATGCGCTGGGTCTTAATGAGCTATGGAGCTTTATCA
GCGGAGACAATGATAAATTTGTGCCACAGCTTGCTGGTGTAAATGGACATTTGCATTTGC
CAGAAGAGTGGAAGAACAGTATGCAATTTCAGGCACCTACGGTTTTGTTTGCAGCAAACA
TACCAAGGCGCACAATTGGCCCTC
■■Homology search results ■■ -
sp_hit_id Q8C1B2
Definition sp|Q8C1B2|PARPT_MOUSE TCDD-inducible poly [ADP-ribose] polymerase OS=Mus musculus
Align length 105
Score (bit) 34.7
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954906|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_L03, 5'
         (624 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8C1B2|PARPT_MOUSE TCDD-inducible poly [ADP-ribose] polymeras...    35   0.41 
sp|A4SYE2|RLMN_POLSQ Ribosomal RNA large subunit methyltransfera...    33   1.5  
sp|O77033|CYC8_DICDI General transcriptional corepressor trfA OS...    33   1.5  
sp|Q7Z3E1|PARPT_HUMAN TCDD-inducible poly [ADP-ribose] polymeras...    32   2.6  
sp|P60007|CK051_MOUSE Uncharacterized protein C11orf51 homolog O...    32   2.6  
sp|P60006|CK051_HUMAN Uncharacterized protein C11orf51 OS=Homo s...    32   2.6  
sp|Q3SZ31|HS020_BOVIN Protein HSPC020 homolog OS=Bos taurus PE=2...    32   3.4  
sp|P27990|PALY_MEDSA Phenylalanine ammonia-lyase OS=Medicago sat...    31   4.5  
sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1 OS=Pisum sativu...    31   4.5  
sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchner...    30   7.7  
sp|O43086|ELG1_SCHPO Telomere length regulation protein elg1 OS=...    30   7.7  

>sp|Q8C1B2|PARPT_MOUSE TCDD-inducible poly [ADP-ribose] polymerase
           OS=Mus musculus GN=Tiparp PE=2 SV=1
          Length = 657

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = -2

Query: 593 CKQNRRCLKLHTVLPLFWQMQMSIYTSKLWHKFIIVSADKAP*LIKTQRIT*THKQNMKL 414
           C   R CLK HTVLP  WQ++ +  T++ W     VS D    L +        +  MK 
Sbjct: 252 CIYGRDCLKHHTVLPYHWQIKRT--TTQKWQS---VSNDSQEHLERFYCNPENDRMRMKY 306

Query: 413 KLKNFNGKLHLERIFEKCKGEKQRLIYVCVLKGQAEI-RNVWDFF 282
             ++F   L+   +FE  + ++ R +          I    W FF
Sbjct: 307 GGQDFWADLNAMTVFETTEFDQLRRLSTPPCSNSNSIYHTFWKFF 351


>sp|A4SYE2|RLMN_POLSQ Ribosomal RNA large subunit methyltransferase
           N OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rlmN
           PE=3 SV=1
          Length = 402

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 21/80 (26%), Positives = 35/80 (43%)
 Frame = +3

Query: 102 PKAHLLVLSASQQQSWIDSIAKKPLQLSALLPWKKPLDSSSSDFMNDESFFHSCDDIEGV 281
           P+ +LL   A Q  +++  + +KP +   L+ W                  H      GV
Sbjct: 4   PRVNLLDFDADQMAAYVAGLNEKPFRAKQLMQW-----------------IHQ----RGV 42

Query: 282 EEIPDVSDLSLAFEDTHVDK 341
            +I D+SDL+ +F  T +DK
Sbjct: 43  SDINDMSDLAKSFRATLLDK 62


>sp|O77033|CYC8_DICDI General transcriptional corepressor trfA
           OS=Dictyostelium discoideum GN=trfA PE=2 SV=1
          Length = 1390

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 489 NDKFVPQLAGVNGHLHLPEEWKNSMQFQAPTVLFAANIPRRT 614
           N+ FVP+LA +N   HLPE+ +N+    +   L ++ I R+T
Sbjct: 592 NNSFVPELAEINS--HLPEDMRNNSSLPSSNELNSSLIDRKT 631


>sp|Q7Z3E1|PARPT_HUMAN TCDD-inducible poly [ADP-ribose] polymerase
           OS=Homo sapiens GN=TIPARP PE=1 SV=1
          Length = 657

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
 Frame = -2

Query: 593 CKQNRRCLKLHTVLPLFWQMQMSIYTSKLWHKFIIVSADKAP*LIKTQRIT*THKQNMKL 414
           C   R CLK HTVLP  WQ++ +  T++ W     V  D    L +        +  MK 
Sbjct: 251 CIYGRDCLKHHTVLPYHWQIKRT--TTQKWQS---VFNDSQEHLERFYCNPENDRMRMKY 305

Query: 413 KLKNFNGKLHLERIFEKCKGEKQRLIYVCVLKGQAEI-RNVWDFF 282
             + F   L+   ++E  + ++ R +          I   VW FF
Sbjct: 306 GGQEFWADLNAMNVYETTEFDQLRRLSTPPSSNVNSIYHTVWKFF 350


>sp|P60007|CK051_MOUSE Uncharacterized protein C11orf51 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 132

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +3

Query: 135 QQQSWIDSIAKKPLQLSALLPWKKPL-----DSSSSDFMNDESFFHSCDDIEGVEEIPDV 299
           Q Q+W+ SIA+K    + L+P  KP      D    D  +DE      +D E ++++ ++
Sbjct: 47  QHQAWLQSIAEKD---NNLVPIGKPASEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEM 103

Query: 300 SDLSLAFEDTHVDK 341
           +D + + +D  V++
Sbjct: 104 NDYNESPDDGEVNE 117


>sp|P60006|CK051_HUMAN Uncharacterized protein C11orf51 OS=Homo
           sapiens GN=C11orf51 PE=2 SV=1
          Length = 121

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +3

Query: 135 QQQSWIDSIAKKPLQLSALLPWKKPL-----DSSSSDFMNDESFFHSCDDIEGVEEIPDV 299
           Q Q+W+ SIA+K    + L+P  KP      D    D  +DE      +D E ++++ ++
Sbjct: 36  QHQAWLQSIAEKD---NNLVPIGKPASEHYDDEEEEDDEDDEDSEEDSEDDEDMQDMDEM 92

Query: 300 SDLSLAFEDTHVDK 341
           +D + + +D  V++
Sbjct: 93  NDYNESPDDGEVNE 106


>sp|Q3SZ31|HS020_BOVIN Protein HSPC020 homolog OS=Bos taurus PE=2
           SV=1
          Length = 121

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
 Frame = +3

Query: 135 QQQSWIDSIAKKPLQLSALLPWKKPL-----DSSSSDFMNDESFFHSCDDIEGVEEIPDV 299
           Q Q+W+ SIA+K    + L+P  KP      D    D  +DE      +D E ++++ ++
Sbjct: 36  QHQAWLQSIAEKD---NNLVPIGKPASEHYDDEEEEDEDDDEDSEEDSEDDEDMQDMDEM 92

Query: 300 SDLSLAFEDTHVDK 341
           +D + + +D  V++
Sbjct: 93  NDYNESPDDGEVNE 106


>sp|P27990|PALY_MEDSA Phenylalanine ammonia-lyase OS=Medicago sativa
           PE=2 SV=1
          Length = 725

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 6/63 (9%)
 Frame = +3

Query: 366 LKNAFQVEFTIEVFQLQLHVLFVSLCDALGLNELWSFISGDNDKFVPQLA------GVNG 527
           L +A +    IE+ QL      ++LC A+ L  L   +       V Q+A      GVNG
Sbjct: 504 LISARKTNEAIEILQLMSSTFLIALCQAIDLRHLEENLKNSVKNTVSQVAKKTLTMGVNG 563

Query: 528 HLH 536
            LH
Sbjct: 564 ELH 566


>sp|Q01861|PAL1_PEA Phenylalanine ammonia-lyase 1 OS=Pisum sativum
           GN=PAL1 PE=2 SV=1
          Length = 723

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
 Frame = +3

Query: 396 IEVFQLQLHVLFVSLCDALGLNELWSFISGDNDKFVPQLA------GVNGHLH 536
           IE+ QL      ++LC A+ L  L   +       V Q+A      GVNG LH
Sbjct: 512 IEILQLMSSTFLIALCQAVDLRHLEENLKNSVKNIVSQVAKRTLTTGVNGELH 564


>sp|P57386|PHR_BUCAI Deoxyribodipyrimidine photo-lyase OS=Buchnera
           aphidicola subsp. Acyrthosiphon pisum GN=phrB PE=3 SV=1
          Length = 483

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 495 KFVPQLAGV-NGHLHLPEEWKNSMQFQ 572
           KF+P+L  V N H+H P EW     F+
Sbjct: 421 KFIPELKNVPNHHIHQPHEWSKQKNFK 447
tr_hit_id Q1J014
Definition tr|Q1J014|Q1J014_DEIGD UvrD/REP helicase OS=Deinococcus geothermalis (strain DSM 11300)
Align length 63
Score (bit) 35.8
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954906|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_L03, 5'
         (624 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1J014|Q1J014_DEIGD UvrD/REP helicase OS=Deinococcus geotherm...    36   2.1  
tr|Q65UL5|Q65UL5_MANSM Putative uncharacterized protein OS=Mannh...    35   4.8  
tr|B8CAV4|B8CAV4_THAPS Predicted protein OS=Thalassiosira pseudo...    34   6.2  
tr|B6EWX4|B6EWX4_LYCBA Putative glycosyltransferase OS=Lycium ba...    34   6.2  
tr|B6KG68|B6KG68_TOXGO Putative uncharacterized protein OS=Toxop...    34   6.2  
tr|Q4Z0J8|Q4Z0J8_PLABE Putative uncharacterized protein (Fragmen...    34   8.0  
tr|B7YZI5|B7YZI5_DROME CG15609, isoform H OS=Drosophila melanoga...    34   8.0  
tr|B7YZI4|B7YZI4_DROME CG15609, isoform D OS=Drosophila melanoga...    34   8.0  
tr|A4UZL3|A4UZL3_DROME CG15609, isoform F OS=Drosophila melanoga...    34   8.0  

>tr|Q1J014|Q1J014_DEIGD UvrD/REP helicase OS=Deinococcus
           geothermalis (strain DSM 11300) GN=Dgeo_0868 PE=4 SV=1
          Length = 741

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +3

Query: 180 LSALLPWKKPLDSSSSDFMNDESFFHSCDDIEGVEEIPDVSDLSLAFEDTHVDKPLFFPF 359
           +SA   W +  + +  DF++D +   S DD+   +E  DV + ++     H  K L FP 
Sbjct: 518 VSAAEEWSRENEGTIGDFLDDAALLSSVDDMRTKQENKDVPEDAVTLMTLHNAKGLEFPV 577

Query: 360 AFL 368
            F+
Sbjct: 578 VFI 580


>tr|Q65UL5|Q65UL5_MANSM Putative uncharacterized protein
           OS=Mannheimia succiniciproducens (strain MBEL55E)
           GN=MS0738 PE=4 SV=1
          Length = 179

 Score = 34.7 bits (78), Expect = 4.8
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
 Frame = +1

Query: 337 ISLCFSPLH--------FSKMRSRWSLPLKFFSFNFMFCL*VY-VMRWVLMSYGALSAET 489
           + LC +P+H        F+ ++  W L  K  S  F++CL VY ++ ++      L+  T
Sbjct: 88  VRLCLAPIHYTVSKTNIFASLQQTWQLGNKRTSTLFLYCLLVYFIVPFIAQQVAFLANNT 147

Query: 490 MINLCHSLLV 519
            +N+  +L++
Sbjct: 148 FLNIITTLII 157


>tr|B8CAV4|B8CAV4_THAPS Predicted protein OS=Thalassiosira pseudonana
            CCMP1335 GN=THAPSDRAFT_9277 PE=4 SV=1
          Length = 1713

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 6    LLDVPSLQTSSVLSFENRSAIAPSSHSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLS 185
            LL +  LQ  S    +N + ++PSS  + R +  A  L+L A+     +D ++  PLQ  
Sbjct: 817  LLSLLPLQNPSSSPTKNPTTLSPSSSPTQRLKSIARCLLLLANSNDITLDLLSLLPLQNP 876

Query: 186  ALLPWKKPLDSSSS 227
            +  P K P   S S
Sbjct: 877  SSSPTKNPTTLSPS 890



 Score = 34.3 bits (77), Expect = 6.2
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 6    LLDVPSLQTSSVLSFENRSAIAPSSHSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLS 185
            LL +  LQ  S    +N + ++PSS  + R +  A  L+L A+     +D ++  PLQ  
Sbjct: 867  LLSLLPLQNPSSSPTKNPTTLSPSSSPTQRLKSIARCLLLLANSNDITLDLLSLLPLQNP 926

Query: 186  ALLPWKKPLDSSSS 227
            +  P K P   S S
Sbjct: 927  SSSPTKNPTTLSPS 940



 Score = 34.3 bits (77), Expect = 6.2
 Identities = 23/74 (31%), Positives = 36/74 (48%)
 Frame = +3

Query: 6    LLDVPSLQTSSVLSFENRSAIAPSSHSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLS 185
            LL +  LQ  S    +N + ++PSS  + R +  A  L+L A+     +D ++  PLQ  
Sbjct: 917  LLSLLPLQNPSSSPTKNPTTLSPSSSPTQRLKSIARCLLLLANSNDITLDLLSLLPLQNP 976

Query: 186  ALLPWKKPLDSSSS 227
            +  P K P   S S
Sbjct: 977  SSSPTKNPTTLSPS 990


>tr|B6EWX4|B6EWX4_LYCBA Putative glycosyltransferase OS=Lycium
           barbarum GN=UGT75A2 PE=2 SV=1
          Length = 471

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
 Frame = +3

Query: 24  LQTSSVLSFENRSAIAPSSHSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLSALLPWK 203
           L  SS++S  +   +     +S    P +H++    +    W  S+AKK + + + L W 
Sbjct: 82  LLNSSIMSHGSEFILNLIKSNSKNGPPFSHVIY---TPLMDWAGSVAKK-INIPSTLFWT 137

Query: 204 KP---LDSSSSDFMNDESFFHSCDDIEGVEEIPDVSDLSLAFEDTHVDKPLFFPFAFLKN 374
           +P    D     F +   +F +CD  + + E+P +  LS          P+ FP     +
Sbjct: 138 QPATVFDIYYYRFTDYSDYFKNCDSQDKIIELPGLPPLS----------PIDFPSFVFDD 187

Query: 375 AFQVEFTIEVFQLQLHVL 428
                + +E  + Q+ +L
Sbjct: 188 VECNNWAVESIKRQIEIL 205


>tr|B6KG68|B6KG68_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_044600 PE=4 SV=1
          Length = 489

 Score = 34.3 bits (77), Expect = 6.2
 Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
 Frame = +3

Query: 15  VPSLQTSSVLSFENRSAIAPSSHSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLSALL 194
           +PS  +S  LS  + S++ PSS S L S   + L   S+S       S +  P      L
Sbjct: 62  LPSSASSPSLSSASFSSLPPSSSSPLSSSSFSSLPPSSSSFPSLSSASFSSLPASSPCPL 121

Query: 195 P--WKKPLDSSSSDFMNDESFFHSCDDIEGVEEIPDVSDLSLAFEDTHVDK 341
           P     PL S +S   +  S F S     GVE + D  D +   ++ H ++
Sbjct: 122 PASSSSPLSSLASLSTSLSSSFSSSFSASGVEALGDAGDTAETAQEDHSEE 172


>tr|Q4Z0J8|Q4Z0J8_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB000619.01.0 PE=4 SV=1
          Length = 729

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = +3

Query: 255 HSCDDIEGVEEIPDVSDLSL-AFEDTHVDKPLFFPFAFLKNAFQVEFTIEVFQLQLHVLF 431
           HSC+  + VEEI  + + +L    D  V  P  FP++F  +A   +  ++ F++Q  ++F
Sbjct: 453 HSCNQSKNVEEIKSLEEYTLELLSDVKVSTPSIFPYSFSASA-GYKNALKKFKIQNSIIF 511

Query: 432 V 434
           +
Sbjct: 512 M 512


>tr|B7YZI5|B7YZI5_DROME CG15609, isoform H OS=Drosophila melanogaster
            GN=CG15609 PE=4 SV=1
          Length = 1039

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +3

Query: 81   HSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLSALLPWKKPLDSSSSDFMNDESFFHS 260
            H+ LR RP++H   ++ + Q +       +P  +  ++P+   LDSS S   + +S   S
Sbjct: 919  HTRLRPRPRSHSCFVNKNHQSTINTPAHLRPHHVHHVVPYTHMLDSSPSALSSQQS---S 975

Query: 261  CDDIEGVEEIPDV 299
            CD++    +  +V
Sbjct: 976  CDNLPACSDDDEV 988


>tr|B7YZI4|B7YZI4_DROME CG15609, isoform D OS=Drosophila
           melanogaster GN=CG15609 PE=4 SV=1
          Length = 1003

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +3

Query: 81  HSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLSALLPWKKPLDSSSSDFMNDESFFHS 260
           H+ LR RP++H   ++ + Q +       +P  +  ++P+   LDSS S   + +S   S
Sbjct: 773 HTRLRPRPRSHSCFVNKNHQSTINTPAHLRPHHVHHVVPYTHMLDSSPSALSSQQS---S 829

Query: 261 CDDIEGVEEIPDV 299
           CD++    +  +V
Sbjct: 830 CDNLPACSDDDEV 842


>tr|A4UZL3|A4UZL3_DROME CG15609, isoform F OS=Drosophila melanogaster
            GN=CG15609 PE=4 SV=1
          Length = 1141

 Score = 33.9 bits (76), Expect = 8.0
 Identities = 19/73 (26%), Positives = 37/73 (50%)
 Frame = +3

Query: 81   HSSLRSRPKAHLLVLSASQQQSWIDSIAKKPLQLSALLPWKKPLDSSSSDFMNDESFFHS 260
            H+ LR RP++H   ++ + Q +       +P  +  ++P+   LDSS S   + +S   S
Sbjct: 911  HTRLRPRPRSHSCFVNKNHQSTINTPAHLRPHHVHHVVPYTHMLDSSPSALSSQQS---S 967

Query: 261  CDDIEGVEEIPDV 299
            CD++    +  +V
Sbjct: 968  CDNLPACSDDDEV 980