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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954910
Clone id TST39A01NGRL0021_L07
Library
Length 655
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_L07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GACTTGATGAGAAGAGAGTAGAGTAGTGCACTGATAAGAGGAAGAAAGAAAAGGTACTGC
TGAGTCGTTATCTGCTGGGATGAATGTGCTGAGTCGTCTTCTGCTGGGCTGAATGGCAAT
GCATAAAAGACTGGAAACGTGTAGCGGAGAGAAGGTTGCAGGATTCCATGTCCTTGCTGG
ACTTCCTGATTTCTTTAGTTGAACACTTCATCCAAACTATCAAACGTGCCCTTGATGGAG
AACAACACAATGGCTAGCTCTTCCTTGAGAAAATCAAGCTCAACGAAGCAGAGAGGTCAA
AAGCGGCATTTTGGTGTTTCAGCATCGGACTCTCGAACTGCACACTATGGATCTGTAACG
GGGCTTCAAATGACGTCTGATGGCTCATACTTGATTAGTGCAGGTCTTTTGTAGGGAAGG
ACTCTAGGCTCAGATTGTGGGATGTAGAATCTGGCTGCAATACTCTTGTAAACTACCCTT
CAGTGTACGTTCGTGGGCACAAGGGCATGCGGATGGCTTTGTCACCAGACTCGTCCCTTC
TTTTCATACCTTCGGATAATTCCATTCAGGTCCGTGATGTCTGGTCAGGTCATGCTTATC
CTTCTCTCCGTGGTCATTATGACCTCACGAACTGCTGCACGTTCCACCCACAAGG
■■Homology search results ■■ -
sp_hit_id Q5BIM8
Definition sp|Q5BIM8|ERCC8_BOVIN DNA excision repair protein ERCC-8 OS=Bos taurus
Align length 80
Score (bit) 70.5
E-value 8.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954910|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_L07, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BIM8|ERCC8_BOVIN DNA excision repair protein ERCC-8 OS=Bos ...    70   8e-16
sp|Q8CFD5|ERCC8_MOUSE DNA excision repair protein ERCC-8 OS=Mus ...    70   1e-15
sp|Q13216|ERCC8_HUMAN DNA excision repair protein ERCC-8 OS=Homo...    67   2e-14
sp|Q9USR0|YN19_SCHPO Uncharacterized WD repeat-containing protei...    33   1e-04
sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pk...    46   2e-04
sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II p300/CBP-assoc...    38   3e-04
sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II p300/CBP-assoc...    38   0.001
sp|Q8YTC2|Y2800_ANASP Uncharacterized WD repeat-containing prote...    42   0.003
sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus t...    42   0.004
sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus norv...    42   0.004
sp|P61965|WDR5_MOUSE WD repeat-containing protein 5 OS=Mus muscu...    42   0.004
sp|P61964|WDR5_HUMAN WD repeat-containing protein 5 OS=Homo sapi...    42   0.004
sp|Q2KIG2|WDR5_BOVIN WD repeat-containing protein 5 OS=Bos tauru...    42   0.004
sp|Q6DH44|MORG1_DANRE Mitogen-activated protein kinase organizer...    36   0.008
sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protei...    36   0.013
sp|Q6PE01|SNR40_MOUSE U5 small nuclear ribonucleoprotein 40 kDa ...    39   0.018
sp|Q96DI7|SNR40_HUMAN U5 small nuclear ribonucleoprotein 40 kDa ...    39   0.018
sp|Q2HJH6|SNR40_BOVIN U5 small nuclear ribonucleoprotein 40 kDa ...    39   0.018
sp|Q5RF51|SNR40_PONAB U5 small nuclear ribonucleoprotein 40 kDa ...    37   0.021
sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus no...    38   0.053
sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus mus...    38   0.053
sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melano...    37   0.069
sp|Q6P1V3|WSB1_XENTR WD repeat and SOCS box-containing protein 1...    36   0.15 
sp|Q86VZ2|WDR5B_HUMAN WD repeat-containing protein 5B OS=Homo sa...    36   0.20 
sp|O35353|GBB4_RAT Guanine nucleotide-binding protein subunit be...    35   0.26 
sp|P29387|GBB4_MOUSE Guanine nucleotide-binding protein subunit ...    35   0.26 
sp|Q7T2F6|WSB1_DANRE WD repeat and SOCS box-containing protein 1...    35   0.34 
sp|Q6TMK6|GBB1_CRIGR Guanine nucleotide-binding protein G(I)/G(S...    35   0.34 
sp|O13282|TAF5_SCHPO Transcription initiation factor TFIID subun...    32   0.43 
sp|Q23256|YH92_CAEEL Uncharacterized WD repeat-containing protei...    35   0.45 

>sp|Q5BIM8|ERCC8_BOVIN DNA excision repair protein ERCC-8 OS=Bos
           taurus GN=ERCC8 PE=2 SV=1
          Length = 397

 Score = 70.5 bits (171), Expect(2) = 8e-16
 Identities = 33/80 (41%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
 Frame = +3

Query: 411 VGKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSP--DSSLLFIPSDNSIQVRDVW 584
           VG D+R+RLW+  +G NTLVNY  VY    KG++  +S    S  +F+P  ++I V  ++
Sbjct: 263 VGTDNRMRLWNSSNGENTLVNYGKVYNDSRKGLKFTVSSGCSSEFVFVPYGSTIAVYTIY 322

Query: 585 SGHAYPSLRGHYDLTNCCTF 644
           SG     L+GHY   +CC F
Sbjct: 323 SGEQITMLKGHYKSVDCCVF 342



 Score = 32.3 bits (72), Expect(2) = 8e-16
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 319 SASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           +A  + TAH G V GL  TSDG +L++ G
Sbjct: 236 AAESANTAHNGKVNGLCFTSDGLHLLTVG 264


>sp|Q8CFD5|ERCC8_MOUSE DNA excision repair protein ERCC-8 OS=Mus
           musculus GN=Ercc8 PE=2 SV=2
          Length = 397

 Score = 70.1 bits (170), Expect(2) = 1e-15
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
 Frame = +3

Query: 411 VGKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALS--PDSSLLFIPSDNSIQVRDVW 584
           +G D+R+RLW+  SG NTLVNY  V     KG++ A+S    S  +F+P  ++I V  V 
Sbjct: 263 IGTDNRMRLWNSSSGDNTLVNYGKVCNDSRKGLQFAVSCGCSSEFVFVPHGSTIAVYAVH 322

Query: 585 SGHAYPSLRGHYDLTNCCTFHP 650
           SG     L+GHY   +CC F P
Sbjct: 323 SGERLAMLKGHYKSVDCCVFQP 344



 Score = 32.0 bits (71), Expect(2) = 1e-15
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +1

Query: 319 SASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           +A  + TAH G V GL  TSDG +L++ G
Sbjct: 236 AAESANTAHNGKVNGLCFTSDGLHLLTIG 264


>sp|Q13216|ERCC8_HUMAN DNA excision repair protein ERCC-8 OS=Homo
           sapiens GN=ERCC8 PE=1 SV=1
          Length = 396

 Score = 67.4 bits (163), Expect(2) = 2e-14
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 2/80 (2%)
 Frame = +3

Query: 411 VGKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALS--PDSSLLFIPSDNSIQVRDVW 584
           VG D+R+RLW+  +G NTLVNY  V     KG++  +S    S  +F+P  ++I V  V+
Sbjct: 263 VGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVY 322

Query: 585 SGHAYPSLRGHYDLTNCCTF 644
           SG     L+GHY   +CC F
Sbjct: 323 SGEQITMLKGHYKTVDCCVF 342



 Score = 30.8 bits (68), Expect(2) = 2e-14
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +1

Query: 319 SASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           +   + TAH G V GL  TSDG +L++ G
Sbjct: 236 AVESANTAHNGKVNGLCFTSDGLHLLTVG 264


>sp|Q9USR0|YN19_SCHPO Uncharacterized WD repeat-containing protein
           C577.09 OS=Schizosaccharomyces pombe GN=SPBC577.09 PE=2
           SV=1
          Length = 404

 Score = 33.1 bits (74), Expect(2) = 1e-04
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTL------VNYPSVYVRGHKGM-RMALSPDSSLLFIPSDNSIQV 572
           G D R+R+W++ESG NTL      ++  +     H  M + ++  D  +LF   D S+ +
Sbjct: 265 GTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHPCMIQPSMDSDVFVLFPNDDGSLAL 324

Query: 573 RDVWSGHAYPSLRGH-YDLTNCCTFHP 650
            ++  G     L  H     NC  + P
Sbjct: 325 LNLLEGSFVRRLSTHSLKRINCAAYRP 351



 Score = 32.0 bits (71), Expect(2) = 1e-04
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +1

Query: 322 ASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           ++ +  +HYG+V GL  TSD  YL S G
Sbjct: 238 SNQTNISHYGTVNGLAWTSDARYLASCG 265


>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase pkwA
           OS=Thermomonospora curvata GN=pkwA PE=3 SV=1
          Length = 742

 Score = 45.8 bits (107), Expect = 2e-04
 Identities = 26/78 (33%), Positives = 38/78 (48%)
 Frame = +3

Query: 417 KDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGHA 596
           +D  +RLWDV +G    V    +       + +A SPD S+L   SD+++ + DV SG A
Sbjct: 605 RDGTIRLWDVATGKERDV----LQAPAENVVSLAFSPDGSMLVHGSDSTVHLWDVASGEA 660

Query: 597 YPSLRGHYDLTNCCTFHP 650
             +  GH D      F P
Sbjct: 661 LHTFEGHTDWVRAVAFSP 678



 Score = 41.6 bits (96), Expect = 0.004
 Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
 Frame = +3

Query: 414 GKDSRLRLWDVESG--CNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDN-SIQVRDVW 584
           G DS + LWDV SG   +T   +   +VR      +A SPD +LL   SD+ +I++ DV 
Sbjct: 645 GSDSTVHLWDVASGEALHTFEGHTD-WVRA-----VAFSPDGALLASGSDDRTIRLWDVA 698

Query: 585 SGHAYPSLRGHYDLTNCCTFHPQ 653
           +   + +L GH +  +   FHP+
Sbjct: 699 AQEEHTTLEGHTEPVHSVAFHPE 721



 Score = 33.9 bits (76), Expect = 0.77
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 468 VNYPSVYVRGHKGMRMALSPDSSLLFIPS-DNSIQVRDVWSGHAYPSLRGHYDLTNCCTF 644
           +N P +     + + +A SP  SLL   S D  I V DV SG    +L GH D      F
Sbjct: 450 LNEPRILTTDREAVAVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAF 509

Query: 645 HP 650
            P
Sbjct: 510 SP 511



 Score = 32.3 bits (72), Expect = 2.2
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = +3

Query: 420 DSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPS-DNSIQVRDVWSGHA 596
           D+ +RLWDV +     V         H  + +A SPD S++   S D + ++ +V +G  
Sbjct: 522 DATVRLWDVAAAEERAVFEGHT----HYVLDIAFSPDGSMVASGSRDGTARLWNVATGTE 577

Query: 597 YPSLRGHYDLTNCCTFHP 650
           +  L+GH D      F P
Sbjct: 578 HAVLKGHTDYVYAVAFSP 595


>sp|Q91WQ5|TAF5L_MOUSE TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1
          Length = 589

 Score = 38.1 bits (87), Expect(2) = 3e-04
 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKG--MRMALSPDSSLLFIPS-DNSIQVRDVW 584
           G+D RL+LWD+ SG  TL       +RGH      +A SPDS L+   S DNS++V D+ 
Sbjct: 487 GEDQRLKLWDLASG--TLFK----ELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR 540

Query: 585 S 587
           S
Sbjct: 541 S 541



 Score = 25.4 bits (54), Expect(2) = 3e-04
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 337 TAHYGSVTGLQMTSDGSYLISAG 405
           T H G V  L  + +G YL SAG
Sbjct: 465 TGHRGPVLSLSFSPNGKYLASAG 487



 Score = 34.3 bits (77), Expect = 0.59
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 420 DSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPS---DNSIQVRDVWSG 590
           D  +RLW  + G +  +        GH+G  ++LS   +  ++ S   D  +++ D+ SG
Sbjct: 447 DKTVRLWSAQQGNSVRL------FTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASG 500

Query: 591 HAYPSLRGHYDLTNCCTFHP 650
             +  LRGH D      F P
Sbjct: 501 TLFKELRGHTDSITSLAFSP 520


>sp|O75529|TAF5L_HUMAN TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L OS=Homo sapiens GN=TAF5L PE=1 SV=1
          Length = 589

 Score = 36.2 bits (82), Expect(2) = 0.001
 Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKG--MRMALSPDSSLLFIPS-DNSIQVRDV 581
           G+D RL+LWD+ SG  TL       +RGH      +  SPDS L+   S DNS++V D+
Sbjct: 487 GEDQRLKLWDLASG--TLYK----ELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDI 539



 Score = 25.0 bits (53), Expect(2) = 0.001
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +1

Query: 337 TAHYGSVTGLQMTSDGSYLISAG 405
           T H G V  L  + +G YL SAG
Sbjct: 465 TGHRGPVLSLAFSPNGKYLASAG 487



 Score = 38.1 bits (87), Expect = 0.041
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = +3

Query: 420 DSRLRLWDVESGCNTLVNYPSVYVRGHKG--MRMALSPDSSLLFIPS-DNSIQVRDVWSG 590
           D  +RLW  + G +  +        GH+G  + +A SP+   L     D  +++ D+ SG
Sbjct: 447 DKTVRLWSAQQGNSVRL------FTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASG 500

Query: 591 HAYPSLRGHYDLTNCCTFHP 650
             Y  LRGH D     TF P
Sbjct: 501 TLYKELRGHTDNITSLTFSP 520


>sp|Q8YTC2|Y2800_ANASP Uncharacterized WD repeat-containing protein
           alr2800 OS=Anabaena sp. (strain PCC 7120) GN=alr2800
           PE=4 SV=1
          Length = 1258

 Score = 42.0 bits (97), Expect = 0.003
 Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
 Frame = +3

Query: 345 LWICNGASNDV*WLILD*CRSFV---GKDSRLRLWDVESGC--NTLVNYPSVYVRGHKGM 509
           L IC G SN V +++       +   G D  ++LW V  G    TL  +       H+  
Sbjct: 677 LLICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIKTLTGHE------HEVF 730

Query: 510 RMALSPDSSLLFIPS-DNSIQVRDVWSGHAYPSLRGHYDLTNCCTFHP 650
            +A  PD   L   S D +I++ D+  G    +L GH D   C  F P
Sbjct: 731 SVAFHPDGETLASASGDKTIKLWDIQDGTCLQTLTGHTDWVRCVAFSP 778



 Score = 35.8 bits (81), Expect = 0.20
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
 Frame = +3

Query: 420  DSRLRLWDVESGCNTLVNYPSVYVRGHKGM--RMALSPDSSLLFIPS-DNSIQVRDVWSG 590
            D  ++LWD ++G      Y S  + GH      +A SPDS  L   S D+S+++ ++ +G
Sbjct: 957  DKTVKLWDWQTG-----KYISS-LEGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTG 1010

Query: 591  HAYPSLRGHYDLTNCCTFHPQ 653
              +  L  H D      FHPQ
Sbjct: 1011 QCFQILLEHTDWVYAVVFHPQ 1031



 Score = 34.3 bits (77), Expect = 0.59
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +3

Query: 420  DSRLRLWDVESG-CNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPS-DNSIQVRDVWSGH 593
            D  ++LW++ +G C   ++  S  + G     MA SPD  LL   S D S+++ D  +G 
Sbjct: 1041 DCTVKLWNISTGQCLKTLSEHSDKILG-----MAWSPDGQLLASASADQSVRLWDCCTGR 1095

Query: 594  AYPSLRGHYDLTNCCTFHP 650
                LRGH +      F P
Sbjct: 1096 CVGILRGHSNRVYSAIFSP 1114



 Score = 31.2 bits (69), Expect = 5.0
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +3

Query: 411  VGKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPS-DNSIQVRDVWS 587
            V  D  +RLW+    C T     + Y      + +A SPD  +L   S D ++++ D  +
Sbjct: 912  VSLDQSVRLWN----CRTGQCLKAWYGNTDWALPVAFSPDRQILASGSNDKTVKLWDWQT 967

Query: 588  GHAYPSLRGHYDLTNCCTFHP 650
            G    SL GH D      F P
Sbjct: 968  GKYISSLEGHTDFIYGIAFSP 988


>sp|Q5M786|WDR5_XENTR WD repeat-containing protein 5 OS=Xenopus
           tropicalis GN=wdr5 PE=2 SV=1
          Length = 334

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
 Frame = +3

Query: 438 WDVESGCNTLVNYPSVY-------VRGHK-GMR-MALSPDSSLLFIPSDN-SIQVRDVWS 587
           W   S  + L+     Y       + GHK G+  +A S DS+LL   SD+ ++++ DV S
Sbjct: 59  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 118

Query: 588 GHAYPSLRGHYDLTNCCTFHPQ 653
           G    +L+GH +   CC F+PQ
Sbjct: 119 GKCLKTLKGHSNYVFCCNFNPQ 140


>sp|Q498M4|WDR5_RAT WD repeat-containing protein 5 OS=Rattus
           norvegicus GN=Wdr5 PE=2 SV=1
          Length = 334

 Score = 41.6 bits (96), Expect = 0.004
 Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
 Frame = +3

Query: 438 WDVESGCNTLVNYPSVY-------VRGHK-GMR-MALSPDSSLLFIPSDN-SIQVRDVWS 587
           W   S  + L+     Y       + GHK G+  +A S DS+LL   SD+ ++++ DV S
Sbjct: 59  WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 118

Query: 588 GHAYPSLRGHYDLTNCCTFHPQ 653
           G    +L+GH +   CC F+PQ
Sbjct: 119 GKCLKTLKGHSNYVFCCNFNPQ 140
tr_hit_id B6SWH6
Definition tr|B6SWH6|B6SWH6_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 80
Score (bit) 92.8
E-value 1.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954910|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_L07, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SWH6|B6SWH6_MAIZE Putative uncharacterized protein OS=Zea m...    93   1e-25
tr|A9RJC8|A9RJC8_PHYPA Predicted protein OS=Physcomitrella paten...   101   3e-25
tr|Q6Z0X1|Q6Z0X1_ORYSJ Putative cockayne syndrome 1 homolog OS=O...    91   5e-25
tr|B8AG70|B8AG70_ORYSI Putative uncharacterized protein OS=Oryza...    91   5e-25
tr|A7NU92|A7NU92_VITVI Chromosome chr18 scaffold_1, whole genome...    92   9e-25
tr|B8ACH4|B8ACH4_ORYSI Putative uncharacterized protein OS=Oryza...    89   7e-24
tr|B7F486|B7F486_ORYSJ cDNA clone:J013122D09, full insert sequen...    89   8e-24
tr|Q93ZG3|Q93ZG3_ARATH At1g27840/F28L5_15 (Putative uncharacteri...    80   2e-21
tr|Q680F0|Q680F0_ARATH MRNA, , clone: RAFL22-57-P16 (MRNA, , clo...    80   2e-21
tr|Q2V4K8|Q2V4K8_ARATH Uncharacterized protein At1g27840.3 OS=Ar...    77   9e-21
tr|Q9FXH4|Q9FXH4_ARATH F6F9.19 protein OS=Arabidopsis thaliana G...    71   2e-18
tr|Q9SFX5|Q9SFX5_ARATH T22C5.29 (Putative uncharacterized protei...    66   1e-16
tr|Q0E1T2|Q0E1T2_ORYSJ Os02g0307200 protein OS=Oryza sativa subs...    89   3e-16
tr|A2ZZR1|A2ZZR1_ORYSJ Putative uncharacterized protein OS=Oryza...    89   3e-16
tr|B3S4S1|B3S4S1_TRIAD Putative uncharacterized protein OS=Trich...    72   7e-16
tr|Q8C1K2|Q8C1K2_MOUSE Putative uncharacterized protein OS=Mus m...    70   2e-14
tr|Q3TZV2|Q3TZV2_MOUSE Putative uncharacterized protein OS=Mus m...    70   2e-14
tr|Q3U152|Q3U152_MOUSE Putative uncharacterized protein OS=Mus m...    69   3e-14
tr|Q5XJ81|Q5XJ81_DANRE Excision repair cross-complementing roden...    70   1e-13
tr|A9C3R3|A9C3R3_DANRE Excision repair cross-complementing roden...    70   1e-13
tr|A8KC61|A8KC61_DANRE Excision repair cross-complementing roden...    70   1e-13
tr|A8KBN5|A8KBN5_DANRE Excision repair cross-complementing roden...    70   1e-13
tr|B4E383|B4E383_HUMAN cDNA FLJ56290, highly similar to DNA exci...    67   2e-13
tr|B2RB64|B2RB64_HUMAN cDNA, FLJ95329, Homo sapiens Cockayne syn...    67   2e-13
tr|A8K3W1|A8K3W1_HUMAN cDNA FLJ78558, highly similar to Homo sap...    67   2e-13
tr|B3KPW7|B3KPW7_HUMAN cDNA FLJ32369 fis, clone PUAEN1000276, hi...    67   2e-13
tr|B4DGZ9|B4DGZ9_HUMAN cDNA FLJ52883, highly similar to DNA exci...    67   2e-13
tr|A7SIS6|A7SIS6_NEMVE Predicted protein OS=Nematostella vectens...    69   3e-13
tr|A6ML05|A6ML05_CALJA DNA excision repair protein ERCC 8-like p...    65   9e-13
tr|Q551N8|Q551N8_DICDI WD-40 repeat-containing protein OS=Dictyo...    64   1e-12

>tr|B6SWH6|B6SWH6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 466

 Score = 92.8 bits (229), Expect(2) = 1e-25
 Identities = 38/80 (47%), Positives = 59/80 (73%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSRLRLWD++SGCNTLVN+ ++ ++  K +++A++ D SL+F+P   SI+  ++WSG 
Sbjct: 344 GSDSRLRLWDIDSGCNTLVNFEAMRLQTGKPLQLAVTEDPSLVFVPCMASIKAYNLWSGK 403

Query: 594 AYPSLRGHYDLTNCCTFHPQ 653
            + + RGHY+L NCC +  Q
Sbjct: 404 TFQTFRGHYELVNCCYYSEQ 423



 Score = 47.0 bits (110), Expect(2) = 1e-25
 Identities = 22/37 (59%), Positives = 31/37 (83%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 QKRHFGVSASDSR-TAHYGSVTGLQMTSDGSYLISAG 405
           Q+ H G+S+S +R TAHYG+VTGL+ T+DG YL+S+G
Sbjct: 308 QRLHPGLSSSQNRATAHYGAVTGLRTTADGMYLLSSG 344


>tr|A9RJC8|A9RJC8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_114956 PE=4 SV=1
          Length = 461

 Score =  101 bits (251), Expect(2) = 3e-25
 Identities = 45/77 (58%), Positives = 57/77 (74%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSR+RLWD+ESG NTLVNY +  +R H+G ++A+S DSSLLF+PS +S+Q  DVWSG 
Sbjct: 329 GTDSRVRLWDIESGRNTLVNYEATKIRTHQGTQLAVSMDSSLLFVPSAHSLQTYDVWSGR 388

Query: 594 AYPSLRGHYDLTNCCTF 644
            +  L GHY   NCC F
Sbjct: 389 MHSKLVGHYGNVNCCAF 405



 Score = 37.0 bits (84), Expect(2) = 3e-25
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 QKRHFGVS-ASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           ++ H G++ A+D  TAH+GSVT LQ + DG  L SAG
Sbjct: 293 RRSHPGMTLANDRSTAHHGSVTALQTSDDGLNLFSAG 329


>tr|Q6Z0X1|Q6Z0X1_ORYSJ Putative cockayne syndrome 1 homolog
           OS=Oryza sativa subsp. japonica GN=OSJNBb0026D20.1 PE=4
           SV=1
          Length = 453

 Score = 90.5 bits (223), Expect(2) = 5e-25
 Identities = 38/80 (47%), Positives = 58/80 (72%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSRLRLWD++SGCNTLVN+ ++ ++  K +++A++ D SL+FIP   SI+  ++WSG 
Sbjct: 329 GSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPLQLAVTEDPSLVFIPCMASIKAYNLWSGM 388

Query: 594 AYPSLRGHYDLTNCCTFHPQ 653
            + + RGHY+  NCC +  Q
Sbjct: 389 TFQTFRGHYEPVNCCYYSAQ 408



 Score = 47.0 bits (110), Expect(2) = 5e-25
 Identities = 22/37 (59%), Positives = 31/37 (83%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 QKRHFGVSASDSR-TAHYGSVTGLQMTSDGSYLISAG 405
           Q+ H G+S+S +R TAHYG+VTGL+ T+DG YL+S+G
Sbjct: 293 QRLHPGLSSSQNRATAHYGAVTGLRTTTDGMYLLSSG 329


>tr|B8AG70|B8AG70_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06897 PE=4 SV=1
          Length = 375

 Score = 90.5 bits (223), Expect(2) = 5e-25
 Identities = 38/80 (47%), Positives = 58/80 (72%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSRLRLWD++SGCNTLVN+ ++ ++  K +++A++ D SL+FIP   SI+  ++WSG 
Sbjct: 251 GSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPLQLAVTEDPSLVFIPCMASIKAYNLWSGM 310

Query: 594 AYPSLRGHYDLTNCCTFHPQ 653
            + + RGHY+  NCC +  Q
Sbjct: 311 TFQTFRGHYEPVNCCYYSAQ 330



 Score = 47.0 bits (110), Expect(2) = 5e-25
 Identities = 22/37 (59%), Positives = 31/37 (83%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 QKRHFGVSASDSR-TAHYGSVTGLQMTSDGSYLISAG 405
           Q+ H G+S+S +R TAHYG+VTGL+ T+DG YL+S+G
Sbjct: 215 QRLHPGLSSSQNRATAHYGAVTGLRTTTDGMYLLSSG 251


>tr|A7NU92|A7NU92_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014959001
           PE=4 SV=1
          Length = 462

 Score = 91.7 bits (226), Expect(2) = 9e-25
 Identities = 38/75 (50%), Positives = 55/75 (73%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSRLRLWD+ SGCNTLVN+ +V ++  K M++A++ DS+L+F+P   +++  DVWSG 
Sbjct: 338 GSDSRLRLWDIMSGCNTLVNFETVRLQTSKAMQLAITNDSALVFVPCMTAVKAFDVWSGK 397

Query: 594 AYPSLRGHYDLTNCC 638
              + RGHY+  NCC
Sbjct: 398 TAMTFRGHYEYVNCC 412



 Score = 45.1 bits (105), Expect(2) = 9e-25
 Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 QKRHFGV-SASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           Q+ H G+ S+ D  T+HYG+VTGL++T DG YL+SAG
Sbjct: 302 QRLHPGMLSSQDRATSHYGAVTGLKVTDDGMYLLSAG 338


>tr|B8ACH4|B8ACH4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04499 PE=4 SV=1
          Length = 377

 Score = 89.0 bits (219), Expect(2) = 7e-24
 Identities = 37/75 (49%), Positives = 56/75 (74%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSRLRLWD++SGCNTLVN+ ++ ++  K +++A++ D SL+FIP   SI+  ++WSG 
Sbjct: 251 GSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPLQLAVTEDPSLVFIPCMASIKAYNLWSGM 310

Query: 594 AYPSLRGHYDLTNCC 638
            + + RGHY+  NCC
Sbjct: 311 TFQTFRGHYEPVNCC 325



 Score = 44.7 bits (104), Expect(2) = 7e-24
 Identities = 21/37 (56%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 QKRHFGVSASDS-RTAHYGSVTGLQMTSDGSYLISAG 405
           Q+ H G+S+S +  TAHYG+VTGL+ T+DG YL+S+G
Sbjct: 215 QRLHPGLSSSQNCATAHYGAVTGLRTTTDGMYLLSSG 251


>tr|B7F486|B7F486_ORYSJ cDNA clone:J013122D09, full insert sequence
           OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 217

 Score = 89.0 bits (219), Expect(2) = 8e-24
 Identities = 37/75 (49%), Positives = 56/75 (74%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSRLRLWD++SGCNTLVN+ ++ ++  K +++A++ D SL+FIP   SI+  ++WSG 
Sbjct: 91  GSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPLQLAVTEDPSLVFIPCMASIKAYNLWSGM 150

Query: 594 AYPSLRGHYDLTNCC 638
            + + RGHY+  NCC
Sbjct: 151 TFQTFRGHYEPVNCC 165



 Score = 44.7 bits (104), Expect(2) = 8e-24
 Identities = 21/37 (56%), Positives = 30/37 (81%), Gaps = 1/37 (2%)
 Frame = +1

Query: 298 QKRHFGVSASDS-RTAHYGSVTGLQMTSDGSYLISAG 405
           Q+ H G+S+S +  TAHYG+VTGL+ T+DG YL+S+G
Sbjct: 55  QRLHPGLSSSQNCATAHYGAVTGLRTTTDGMYLLSSG 91


>tr|Q93ZG3|Q93ZG3_ARATH At1g27840/F28L5_15 (Putative uncharacterized
           protein At1g27840) OS=Arabidopsis thaliana GN=At1g27840
           PE=2 SV=1
          Length = 450

 Score = 79.7 bits (195), Expect(2) = 2e-21
 Identities = 34/78 (43%), Positives = 53/78 (67%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSR+RLWD+ESG NTLVN+ +  ++ +KG+++  S D +L+F+P   +++   +WSG 
Sbjct: 331 GSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSDDPALVFVPCMKTVKAFGMWSGR 390

Query: 594 AYPSLRGHYDLTNCCTFH 647
               LRGHY+  N C F+
Sbjct: 391 TTLMLRGHYESVNTCCFN 408



 Score = 45.8 bits (107), Expect(2) = 2e-21
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286 KQRGQKRHFGV-SASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           K R ++ H G+ S  D  TAHYG+VTGL+ T+DG YL+SAG
Sbjct: 291 KSRQKRIHPGMLSTLDRATAHYGAVTGLKATNDGMYLLSAG 331


>tr|Q680F0|Q680F0_ARATH MRNA, , clone: RAFL22-57-P16 (MRNA, , clone:
           RAFL22-96-B11) (MRNA, , clone: RAFL22-29-M18)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 393

 Score = 79.7 bits (195), Expect(2) = 2e-21
 Identities = 34/78 (43%), Positives = 53/78 (67%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVRDVWSGH 593
           G DSR+RLWD+ESG NTLVN+ +  ++ +KG+++  S D +L+F+P   +++   +WSG 
Sbjct: 274 GSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSDDPALVFVPCMKTVKAFGMWSGR 333

Query: 594 AYPSLRGHYDLTNCCTFH 647
               LRGHY+  N C F+
Sbjct: 334 TTLMLRGHYESVNTCCFN 351



 Score = 45.8 bits (107), Expect(2) = 2e-21
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286 KQRGQKRHFGV-SASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           K R ++ H G+ S  D  TAHYG+VTGL+ T+DG YL+SAG
Sbjct: 234 KSRQKRIHPGMLSTLDRATAHYGAVTGLKATNDGMYLLSAG 274


>tr|Q2V4K8|Q2V4K8_ARATH Uncharacterized protein At1g27840.3
           OS=Arabidopsis thaliana GN=At1g27840 PE=4 SV=1
          Length = 451

 Score = 77.4 bits (189), Expect(2) = 9e-21
 Identities = 35/79 (44%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
 Frame = +3

Query: 414 GKDSRLRLWDVESGCNTLVNYPSVYVRGHKGMRMALSPDSSLLFIPSDNSIQVR-DVWSG 590
           G DSR+RLWD+ESG NTLVN+ +  ++ +KG+++  S D +L+F+P   +++V   +WSG
Sbjct: 331 GSDSRIRLWDIESGRNTLVNFETGRIQTNKGIQLDTSDDPALVFVPCMKTVKVAFGMWSG 390

Query: 591 HAYPSLRGHYDLTNCCTFH 647
                LRGHY+  N C F+
Sbjct: 391 RTTLMLRGHYESVNTCCFN 409



 Score = 45.8 bits (107), Expect(2) = 9e-21
 Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
 Frame = +1

Query: 286 KQRGQKRHFGV-SASDSRTAHYGSVTGLQMTSDGSYLISAG 405
           K R ++ H G+ S  D  TAHYG+VTGL+ T+DG YL+SAG
Sbjct: 291 KSRQKRIHPGMLSTLDRATAHYGAVTGLKATNDGMYLLSAG 331