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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK954992
Clone id TST39A01NGRL0021_O17
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0021_O17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAATAACCCACTAGGTAGGTACATCACGGTAATTCCAATATGTTCGGTTCCTTCTTGAG
TCTTTGTATCGATGCAATTGTTGTGAGTGGAAGCATTCATGGCGGCACAGCTGCGAGCTT
CGTCGCCTTGCTTACATTCTCACGCGTCTCTTCTTCCACCACTTTTATCAACTCGTACCC
AGCGGTTTTCTGTGAACAAAGGCTCTATATGTCCGAGCGTTTCTGTTTTCAGATCTGCGG
GTAAGCATGGTTACTTTACTTCTGCTTATTCCTCATTTCTATCTCCAACTTCCACGACAT
CAACGGACAGTAAGGAGTTTGCCGAATTGAGTGAATTTGGCTGTGGAGGCAATGAGTCTG
GGAACGGAACTGGTGGTGATGGTGGTGGTGGCTGGCATGATGGCCATGCAGAGAATGATG
ATTATGGAGGCTCTACAGGGAAGGGAGGCTTCTTTGCTGCACTTTTGAAGGGCTGGAATG
AGAGGGTGAATGCAGATCCGCAGTTTCCTTTCAAGGTCCTGATGGAGCAAATTGTGGGTG
TAGGTGCATCGGTCGCCGGAGACATGGCGTCACGCCCTAATTTTGGCTTGAATGA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954992|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_O17, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A9S0J4
Definition tr|A9S0J4|A9S0J4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 63
Score (bit) 89.7
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK954992|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0021_O17, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S0J4|A9S0J4_PHYPA Predicted protein (Fragment) OS=Physcomit...    90   1e-16
tr|A9SGF8|A9SGF8_PHYPA Predicted protein OS=Physcomitrella paten...    86   1e-15
tr|A9NN76|A9NN76_PICSI Putative uncharacterized protein OS=Picea...    86   2e-15
tr|A9RCY2|A9RCY2_PHYPA Predicted protein (Fragment) OS=Physcomit...    85   3e-15
tr|Q7F2H9|Q7F2H9_ORYSJ P0432B10.9 protein OS=Oryza sativa subsp....    80   9e-14
tr|Q5VQR0|Q5VQR0_ORYSJ Putative uncharacterized protein P0425G02...    80   9e-14
tr|Q0JIB8|Q0JIB8_ORYSJ Os01g0812900 protein (Fragment) OS=Oryza ...    80   9e-14
tr|B8AB91|B8AB91_ORYSI Putative uncharacterized protein OS=Oryza...    80   9e-14
tr|A7Q9W5|A7Q9W5_VITVI Chromosome chr8 scaffold_68, whole genome...    79   3e-13
tr|A9SRW0|A9SRW0_PHYPA Predicted protein (Fragment) OS=Physcomit...    77   1e-12
tr|A9PBE4|A9PBE4_POPTR Putative uncharacterized protein OS=Popul...    77   1e-12
tr|Q9C9Z2|Q9C9Z2_ARATH Putative uncharacterized protein F17O14.1...    76   1e-12
tr|Q9C9Z3|Q9C9Z3_ARATH Putative uncharacterized protein F17O14.1...    74   8e-12
tr|Q0WS36|Q0WS36_ARATH Putative uncharacterized protein At3g0863...    74   8e-12
tr|A8J3R4|A8J3R4_CHLRE Predicted protein (Fragment) OS=Chlamydom...    72   2e-11
tr|B6THT9|B6THT9_MAIZE Putative uncharacterized protein OS=Zea m...    72   3e-11
tr|B5LVM1|B5LVM1_9TURB NK2.1 OS=Convolutriloba longifissura PE=2...    35   2.5  

>tr|A9S0J4|A9S0J4_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_25352 PE=4 SV=1
          Length = 273

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 42/63 (66%), Positives = 49/63 (77%)
 Frame = +3

Query: 405 HAENDDYGGSTGKGGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNF 584
           H +++   GS G  G F  L +GWN+R+ ADPQFPFKVLMEQIVGVGA V GDMA+RPNF
Sbjct: 23  HGKDESNSGSPG--GIFGGLWEGWNDRIRADPQFPFKVLMEQIVGVGACVLGDMATRPNF 80

Query: 585 GLN 593
           GLN
Sbjct: 81  GLN 83


>tr|A9SGF8|A9SGF8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129468 PE=4 SV=1
          Length = 313

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 42/58 (72%), Positives = 45/58 (77%), Gaps = 2/58 (3%)
 Frame = +3

Query: 426 GGSTGK--GGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           G S GK  GG F    KGWN+RV ADPQF FKVLME++VGVGA V GDMASRPNFGLN
Sbjct: 48  GESEGKSPGGIFGVFWKGWNDRVRADPQFAFKVLMEEVVGVGACVLGDMASRPNFGLN 105


>tr|A9NN76|A9NN76_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 359

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 40/59 (67%), Positives = 45/59 (76%)
 Frame = +3

Query: 417 DDYGGSTGKGGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           D+ GG    GG  AA L+GW  RV ADPQFPFKVLME++VGV A V GDMASRPNFGL+
Sbjct: 97  DNGGGKKMTGGLLAAFLQGWKSRVEADPQFPFKVLMEELVGVSACVLGDMASRPNFGLD 155


>tr|A9RCY2|A9RCY2_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_111758 PE=4 SV=1
          Length = 314

 Score = 85.1 bits (209), Expect = 3e-15
 Identities = 42/64 (65%), Positives = 47/64 (73%), Gaps = 8/64 (12%)
 Frame = +3

Query: 426 GGSTGKG--------GFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPN 581
           G S GKG        G F  L KGW++RV ADP+FPFKVLMEQ+VGVGA V GDMA+RPN
Sbjct: 43  GESHGKGENEEGSPSGIFGTLWKGWDDRVRADPEFPFKVLMEQVVGVGACVLGDMATRPN 102

Query: 582 FGLN 593
           FGLN
Sbjct: 103 FGLN 106


>tr|Q7F2H9|Q7F2H9_ORYSJ P0432B10.9 protein OS=Oryza sativa subsp.
           japonica GN=P0432B10.9 PE=4 SV=1
          Length = 401

 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 40/58 (68%), Positives = 43/58 (74%)
 Frame = +3

Query: 420 DYGGSTGKGGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           D GGS+G  G     L GW  RV ADPQFPFKVLME++VGV A V GDMASRPNFGLN
Sbjct: 136 DSGGSSG--GILGIFLAGWAARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLN 191


>tr|Q5VQR0|Q5VQR0_ORYSJ Putative uncharacterized protein P0425G02.34
           (Putative uncharacterized protein OSJNBa0085D07.3)
           OS=Oryza sativa subsp. japonica GN=P0425G02.34 PE=4 SV=1
          Length = 348

 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 40/58 (68%), Positives = 43/58 (74%)
 Frame = +3

Query: 420 DYGGSTGKGGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           D GGS+G  G     L GW  RV ADPQFPFKVLME++VGV A V GDMASRPNFGLN
Sbjct: 83  DSGGSSG--GILGIFLAGWAARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLN 138


>tr|Q0JIB8|Q0JIB8_ORYSJ Os01g0812900 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0812900 PE=4 SV=1
          Length = 393

 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 40/58 (68%), Positives = 43/58 (74%)
 Frame = +3

Query: 420 DYGGSTGKGGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           D GGS+G  G     L GW  RV ADPQFPFKVLME++VGV A V GDMASRPNFGLN
Sbjct: 128 DSGGSSG--GILGIFLAGWAARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLN 183


>tr|B8AB91|B8AB91_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04178 PE=4 SV=1
          Length = 347

 Score = 80.1 bits (196), Expect = 9e-14
 Identities = 40/58 (68%), Positives = 43/58 (74%)
 Frame = +3

Query: 420 DYGGSTGKGGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           D GGS+G  G     L GW  RV ADPQFPFKVLME++VGV A V GDMASRPNFGLN
Sbjct: 83  DSGGSSG--GILGIFLAGWAARVAADPQFPFKVLMEELVGVSACVLGDMASRPNFGLN 138


>tr|A7Q9W5|A7Q9W5_VITVI Chromosome chr8 scaffold_68, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033650001
           PE=4 SV=1
          Length = 405

 Score = 78.6 bits (192), Expect = 3e-13
 Identities = 38/57 (66%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
 Frame = +3

Query: 426 GGSTGKG-GFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           GG + +G G     L GW  RV+ADPQFPFKVLME++VGV A V GDMASRPNFGLN
Sbjct: 88  GGESWEGFGVLGLFLNGWRSRVSADPQFPFKVLMEELVGVTACVIGDMASRPNFGLN 144


>tr|A9SRW0|A9SRW0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_45903 PE=4 SV=1
          Length = 246

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 37/58 (63%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
 Frame = +3

Query: 426 GGSTG--KGGFFAALLKGWNERVNADPQFPFKVLMEQIVGVGASVAGDMASRPNFGLN 593
           GG  G  + G F A  +GW ERV ADPQF FKV  E ++GV A VAGDMASRPNFGLN
Sbjct: 9   GGDEGNVRAGIFEAFRRGWRERVRADPQFGFKVFSEVVIGVAACVAGDMASRPNFGLN 66