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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955053
Clone id TST39A01NGRL0022_B06
Library
Length 526
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_B06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGATTATCCTAGCAAATGGAGAGTGGTTGTACGCAGTATTCAGTATGGCCATCTCCGTAC
CCCGCTTCCACGGCAGTTGTCGGTCCTCATCTGCGCCCCCGACATCAGAGCTTGGCGAAT
ATCTTCTCTGGTCTCAAGGCCACTACTCTGTTCGCCCCACAGAGCCCCTACCCGCTGGCC
CTCTCACAGGGTGCCCGTGTGAGCGCCATGCTTGTGTGGAAACCGTATGCACTAACATCA
AGTTCTAGACACTGTCCTACTTGCTCGCCTTTGCCCAGTGAGCAGATTGCGAAACATGTG
GACTTCAGTGGTGCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACTAAATCGGGAGCGT
GTACCGCGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAA
GCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCACAGTGCGC
CAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGGCTTTGACGC
■■Homology search results ■■ -
sp_hit_id Q96542
Definition sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa
Align length 71
Score (bit) 98.6
E-value 1.0e-25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955053|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_B06, 5'
         (526 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...    99   1e-25
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   100   5e-25
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   100   8e-25
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   102   1e-24
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...    99   1e-24
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...    99   2e-24
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...    98   2e-24
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   102   5e-24
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   102   5e-24
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   108   1e-23
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   100   3e-23
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   100   3e-23
sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha...   100   6e-23
sp|P04714|RBS1_PETHY Ribulose bisphosphate carboxylase small cha...    92   7e-23
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...    99   7e-23
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   105   1e-22
sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha...   105   2e-22
sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha...   105   2e-22
sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha...   105   2e-22
sp|P05349|RBS3B_SOLLC Ribulose bisphosphate carboxylase small ch...    96   2e-22
sp|P07180|RBS3A_SOLLC Ribulose bisphosphate carboxylase small ch...    96   2e-22
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...    99   2e-22
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   104   2e-22
sp|P04715|RBS2_PETHY Ribulose bisphosphate carboxylase small cha...    92   3e-22
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   104   3e-22
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha...   104   3e-22
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   104   3e-22
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   103   4e-22
sp|P07179|RBS2A_SOLLC Ribulose bisphosphate carboxylase small ch...    95   5e-22
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   103   5e-22

>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score = 98.6 bits (244), Expect(2) = 1e-25
 Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*I-GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAK 484
           ++RK   PC+EF+   G VYREH    GYYDGRYW MWKLPMFGC D++ VL+E+ +C K
Sbjct: 92  LLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKK 151

Query: 485 EYPEAFIRVLG 517
            YP AFIR++G
Sbjct: 152 AYPSAFIRIIG 162



 Score = 38.5 bits (88), Expect(2) = 1e-25
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFA----PQSPYPLALSQGARVSAMLVWKPYA 231
           ++T        P   S+   F+ LK+T+ F       +      S G RV  M VW P  
Sbjct: 8   SATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLG 67

Query: 232 LTSSSRHCPTCSPLPSEQIAKHVDFSGAKRLDP 330
           L           PL SEQ+AK VD+   K L P
Sbjct: 68  LKKFET-LSYLPPLSSEQLAKEVDYLLRKNLIP 99


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  100 bits (250), Expect(2) = 5e-25
 Identities = 42/71 (59%), Positives = 53/71 (74%), Gaps = 1/71 (1%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*I-GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAK 484
           +++KGW PC+EF+   G VYREH    GYYDGRYW MWKLPMFGC DA  VL E+ +  K
Sbjct: 90  LLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKK 149

Query: 485 EYPEAFIRVLG 517
            YP+A+IR++G
Sbjct: 150 AYPQAWIRIIG 160



 Score = 34.3 bits (77), Expect(2) = 5e-25
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 7/87 (8%)
 Frame = +1

Query: 67  STAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLAL----SQGARVSAMLVWKPYAL 234
           STA V         S+   F+GLK+   F       L +    S G RV  MLVW P   
Sbjct: 7   STATVATGANAAQASMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPI-- 64

Query: 235 TSSSRHCPTCSPLP---SEQIAKHVDF 306
             + +   T S LP    EQ+ K +++
Sbjct: 65  --NKKKYETLSYLPDLSDEQLLKEIEY 89


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  100 bits (250), Expect(2) = 8e-25
 Identities = 42/71 (59%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*I-GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAK 484
           ++RKGW PC+EF+   G V+R++    GYYDGRYW MW+LP+FG  DAA VL+E+A+C  
Sbjct: 88  LLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKA 147

Query: 485 EYPEAFIRVLG 517
           EYPEAFIR++G
Sbjct: 148 EYPEAFIRIIG 158



 Score = 33.5 bits (75), Expect(2) = 8e-25
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFA---PQSPYPLALSQGARVSAMLVWKPYAL 234
           +S AV   +  P   +LA  F+GLK++  F      +      S G+RV+ M VW P   
Sbjct: 5   SSAAVTTINRAPVQANLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVG- 63

Query: 235 TSSSRHCPTCSPLPSEQIAKHVDF 306
                      PL  EQ+ K V++
Sbjct: 64  KKKFETLSYLPPLTDEQLLKEVEY 87


>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain
           2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B
           PE=2 SV=2
          Length = 181

 Score =  102 bits (254), Expect(2) = 1e-24
 Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*I-GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAK 484
           ++R  W PC+EF+   G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ +C K
Sbjct: 88  LLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147

Query: 485 EYPEAFIRVLG 517
           EYP AFIR++G
Sbjct: 148 EYPGAFIRIIG 158



 Score = 31.2 bits (69), Expect(2) = 1e-24
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFA----PQSPYPLALSQGARVSAMLVWKPYA 231
           +STAVV     P   ++   F+GLK++  F       +      S G RVS M VW P  
Sbjct: 7   SSTAVV---TSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPI- 62

Query: 232 LTSSSRHCPTCSPLP---SEQIAKHVDF 306
                +   T S LP     ++AK VD+
Sbjct: 63  ---GKKKFETLSYLPDLSDVELAKEVDY 87


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score = 98.6 bits (244), Expect(2) = 1e-24
 Identities = 40/70 (57%), Positives = 50/70 (71%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAKE 487
           ++R  W PCIEF   G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ +  K 
Sbjct: 90  LLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKA 149

Query: 488 YPEAFIRVLG 517
           YPE F+R++G
Sbjct: 150 YPEYFVRIIG 159



 Score = 35.0 bits (79), Expect(2) = 1e-24
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 4/85 (4%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFAP----QSPYPLALSQGARVSAMLVWKPYA 231
           ASTA V     P   S+   F+GL+++  F       +      S G RVS M VW P  
Sbjct: 7   ASTAAVA-RAGPAQSSMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEG 65

Query: 232 LTSSSRHCPTCSPLPSEQIAKHVDF 306
           L           PL  E +AK VD+
Sbjct: 66  L-KKFETLSYLPPLSVEDLAKEVDY 89


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score = 98.6 bits (244), Expect(2) = 2e-24
 Identities = 40/70 (57%), Positives = 50/70 (71%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAKE 487
           ++R  W PCIEF   G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ +  K 
Sbjct: 90  LLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKA 149

Query: 488 YPEAFIRVLG 517
           YPE F+R++G
Sbjct: 150 YPEYFVRIIG 159



 Score = 34.3 bits (77), Expect(2) = 2e-24
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFAP----QSPYPLALSQGARVSAMLVWKPYA 231
           ASTA V   + P   ++   F+GL+++  F       +      S G RVS M VW P  
Sbjct: 7   ASTAAVA-RVGPAQTNMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEG 65

Query: 232 LTSSSRHCPTCSPLPSEQIAKHVDF 306
           L           PL  E +AK VD+
Sbjct: 66  L-KKFETLSYLPPLSVEDLAKEVDY 89


>sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2
          Length = 173

 Score = 97.8 bits (242), Expect(2) = 2e-24
 Identities = 40/70 (57%), Positives = 50/70 (71%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAKE 487
           ++R  W PCIEF   G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ +  K 
Sbjct: 86  LLRNDWVPCIEFSKEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKA 145

Query: 488 YPEAFIRVLG 517
           YPE F+R++G
Sbjct: 146 YPEYFVRIIG 155



 Score = 35.0 bits (79), Expect(2) = 2e-24
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 67  STAVVGPHLRPRHQSLANIFSGLKATTLFAP----QSPYPLALSQGARVSAMLVWKPYAL 234
           STA V   +RP   ++   F+G +++  F       +      S G RVS M VW P  L
Sbjct: 4   STAAVA-RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGL 62

Query: 235 TSSSRHCPTCSPLPSEQIAKHVDF 306
                      PL  E +AK VD+
Sbjct: 63  -KKFETLSYLPPLSVEDLAKEVDY 85


>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain
           3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B
           PE=1 SV=2
          Length = 181

 Score =  102 bits (254), Expect(2) = 5e-24
 Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*I-GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAK 484
           ++R  W PC+EF+   G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ +C K
Sbjct: 88  LLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147

Query: 485 EYPEAFIRVLG 517
           EYP AFIR++G
Sbjct: 148 EYPGAFIRIIG 158



 Score = 29.3 bits (64), Expect(2) = 5e-24
 Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFA----PQSPYPLALSQGARVSAMLVWKPYA 231
           +S AVV     P   ++   F+GLK++  F              S G RVS M VW P  
Sbjct: 7   SSAAVV---TSPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKVWPPI- 62

Query: 232 LTSSSRHCPTCSPLP---SEQIAKHVDF 306
                +   T S LP     ++AK VD+
Sbjct: 63  ---GKKKFETLSYLPDLSDVELAKEVDY 87


>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain
           1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B
           PE=1 SV=1
          Length = 181

 Score =  102 bits (254), Expect(2) = 5e-24
 Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*I-GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAK 484
           ++R  W PC+EF+   G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ +C K
Sbjct: 88  LLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKK 147

Query: 485 EYPEAFIRVLG 517
           EYP AFIR++G
Sbjct: 148 EYPGAFIRIIG 158



 Score = 29.3 bits (64), Expect(2) = 5e-24
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFA----PQSPYPLALSQGARVSAMLVWKPYA 231
           +S AVV     P   ++   F+GLK++  F       +      S G RVS M VW P  
Sbjct: 7   SSAAVV---TSPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKVWPPI- 62

Query: 232 LTSSSRHCPTCSPLP---SEQIAKHVDF 306
                +   T S LP     ++AK VD+
Sbjct: 63  ---GKKKFETLSYLPDLTDVELAKEVDY 87


>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  108 bits (271), Expect = 1e-23
 Identities = 45/71 (63%), Positives = 55/71 (77%), Gaps = 1/71 (1%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*I-GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAK 484
           ++R  W PC+EF+   G VYREH H  GYYDGRYW MWKLPMFGC D+A V++E+ +C K
Sbjct: 90  LIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKK 149

Query: 485 EYPEAFIRVLG 517
           EYP AFIRV+G
Sbjct: 150 EYPNAFIRVIG 160
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 70
Score (bit) 142.0
E-value 7.0e-48
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955053|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_B06, 5'
         (526 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   142   7e-48
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...    99   2e-27
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...    97   2e-27
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...    95   8e-27
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...    99   1e-26
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...    98   1e-26
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...    97   5e-26
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...    93   1e-25
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...    98   2e-25
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...    94   2e-25
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...    92   9e-25
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...    92   1e-24
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   100   6e-24
tr|Q8CFJ2|Q8CFJ2_MOUSE Putative uncharacterized protein OS=Mus m...    98   3e-23
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...    90   4e-23
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...    90   4e-23
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   105   4e-23
tr|A9NL36|A9NL36_PICSI Ribulose bisphosphate carboxylase small c...   101   8e-23
tr|A9NNZ8|A9NNZ8_PICSI Ribulose bisphosphate carboxylase small c...   101   8e-23
tr|A9NML5|A9NML5_PICSI Ribulose bisphosphate carboxylase small c...   101   8e-23
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   109   1e-22
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   109   1e-22
tr|A9NMJ1|A9NMJ1_PICSI Ribulose bisphosphate carboxylase small c...   101   1e-22
tr|B3H5S2|B3H5S2_ARATH Uncharacterized protein At5g38410.3 OS=Ar...   100   2e-22
tr|A9NM29|A9NM29_PICSI Ribulose bisphosphate carboxylase small c...   100   3e-22
tr|A9NLD6|A9NLD6_PICSI Ribulose bisphosphate carboxylase small c...   100   3e-22
tr|A9NKU8|A9NKU8_PICSI Ribulose bisphosphate carboxylase small c...   100   3e-22
tr|Q67IU5|Q67IU5_ORYSJ Ribulose bisphosphate carboxylase small c...   107   4e-22
tr|B8AHT7|B8AHT7_ORYSI Putative uncharacterized protein OS=Oryza...   107   4e-22
tr|A3A381|A3A381_ORYSJ Ribulose bisphosphate carboxylase small c...   107   4e-22

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  142 bits (357), Expect(2) = 7e-48
 Identities = 61/70 (87%), Positives = 66/70 (94%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAKE 487
           +VRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIA+CAKE
Sbjct: 86  MVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAECAKE 145

Query: 488 YPEAFIRVLG 517
           YP AFIRVLG
Sbjct: 146 YPTAFIRVLG 155



 Score = 73.2 bits (178), Expect(2) = 7e-48
 Identities = 43/92 (46%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
 Frame = +1

Query: 64  ASTAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLALSQGARVSAMLVWKPYALTSS 243
           A+ AV  P      +SL+  FSGLKA TLFAP+   PLA+S G+R+SAMLVWKPY     
Sbjct: 6   AAMAVSAPSCAAAAESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPY----D 61

Query: 244 SRHCPTCS---PLPSEQIAKHVDFSGAKRLDP 330
           ++   T S   PL ++QIAK V++   K   P
Sbjct: 62  NKKFETLSYLPPLTNDQIAKQVEYMVRKGWTP 93


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score = 98.6 bits (244), Expect(2) = 2e-27
 Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAQC 478
           ++++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI +C
Sbjct: 89  MIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQEC 148

Query: 479 AKEYPEAFIRVLG 517
            + +P  ++RVLG
Sbjct: 149 KQSFPSCWVRVLG 161



 Score = 48.5 bits (114), Expect(2) = 2e-27
 Identities = 32/86 (37%), Positives = 40/86 (46%)
 Frame = +1

Query: 73  AVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLALSQGARVSAMLVWKPYALTSSSRH 252
           A   P    R  S    FSGLK+TTLFA ++    ++  G+RV  M VW P         
Sbjct: 12  AAASPAAVCRESSSVKQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETF 71

Query: 253 CPTCSPLPSEQIAKHVDFSGAKRLDP 330
                PL  +QIAK VDF   + L P
Sbjct: 72  -SYLPPLTDDQIAKQVDFMIQQNLIP 96


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score = 97.4 bits (241), Expect(2) = 2e-27
 Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAQC 478
           ++++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI +C
Sbjct: 93  MIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQEC 152

Query: 479 AKEYPEAFIRVLG 517
             ++P  ++RVLG
Sbjct: 153 KTQFPSCWVRVLG 165



 Score = 49.3 bits (116), Expect(2) = 2e-27
 Identities = 30/90 (33%), Positives = 41/90 (45%)
 Frame = +1

Query: 61  PASTAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLALSQGARVSAMLVWKPYALTS 240
           P S A   P    R  +    FSGLK+ TLF+ Q+    ++  G+RV  M VW P     
Sbjct: 12  PVSLAAASPAAVSRDSTSVKAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPK 71

Query: 241 SSRHCPTCSPLPSEQIAKHVDFSGAKRLDP 330
                    PL  ++IAK VD+   + L P
Sbjct: 72  FETF-SYLPPLTDDEIAKQVDYMIQQNLIP 100


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score = 95.1 bits (235), Expect(2) = 8e-27
 Identities = 41/70 (58%), Positives = 51/70 (72%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAKE 487
           ++++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI +C K 
Sbjct: 94  MIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKT 153

Query: 488 YPEAFIRVLG 517
           +P  F+RVLG
Sbjct: 154 FPGCFVRVLG 163



 Score = 49.7 bits (117), Expect(2) = 8e-27
 Identities = 29/90 (32%), Positives = 44/90 (48%)
 Frame = +1

Query: 61  PASTAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLALSQGARVSAMLVWKPYALTS 240
           PA+ A     +     +    FSGLK+ TLF+ QS    ++  G+RV+ M VW P  +T 
Sbjct: 13  PAAFAAASSGVSTSESTSVKAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTK 72

Query: 241 SSRHCPTCSPLPSEQIAKHVDFSGAKRLDP 330
                    PL  + IAK V++   ++L P
Sbjct: 73  FETF-SYLPPLSDDAIAKQVEYMIQQKLIP 101


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score = 98.6 bits (244), Expect(2) = 1e-26
 Identities = 43/73 (58%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAQC 478
           ++++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI +C
Sbjct: 89  MIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQEC 148

Query: 479 AKEYPEAFIRVLG 517
            + +P  ++RVLG
Sbjct: 149 KQSFPSCWVRVLG 161



 Score = 45.8 bits (107), Expect(2) = 1e-26
 Identities = 35/105 (33%), Positives = 45/105 (42%)
 Frame = +1

Query: 16  MESGCTQYSVWPSPYPASTAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLALSQGA 195
           M S     S+  +  PAS          R  S    FSGLK+TTL A ++    ++  G+
Sbjct: 1   MASAVVSVSIVAAASPASVC--------RESSSVKQFSGLKSTTLSASKARRLSSVHNGS 52

Query: 196 RVSAMLVWKPYALTSSSRHCPTCSPLPSEQIAKHVDFSGAKRLDP 330
           RV  M VW P              PL  +QIAK VDF   + L P
Sbjct: 53  RVQCMQVWNPIGQPKFETF-SYLPPLTDDQIAKQVDFMIQQNLIP 96


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score = 97.8 bits (242), Expect(2) = 1e-26
 Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAQC 478
           ++++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI +C
Sbjct: 124 MIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQEC 183

Query: 479 AKEYPEAFIRVLG 517
             ++P  ++RVLG
Sbjct: 184 KSQFPSCWVRVLG 196



 Score = 46.2 bits (108), Expect(2) = 1e-26
 Identities = 35/110 (31%), Positives = 48/110 (43%)
 Frame = +1

Query: 1   RLS*QMESGCTQYSVWPSPYPASTAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLA 180
           R S  M S      V P     +++ VG    P   S    FSGLK+ TLF+ ++    +
Sbjct: 26  RESVAMASAVVSTVVAPVALGGASSCVGA---PSESSSVKAFSGLKSATLFSGKTQKLSS 82

Query: 181 LSQGARVSAMLVWKPYALTSSSRHCPTCSPLPSEQIAKHVDFSGAKRLDP 330
           +  G+RV  M VW P              PL  +QIAK VD+   + L P
Sbjct: 83  VQNGSRVQCMQVWNPIGQPKFETF-SYLPPLTDDQIAKQVDYMIQQNLIP 131


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score = 97.1 bits (240), Expect(2) = 5e-26
 Identities = 42/73 (57%), Positives = 54/73 (73%), Gaps = 3/73 (4%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSG---YYDGRYWVMWKLPMFGCQDAAAVLREIAQC 478
           ++++   PCIEFD +G+V R +F GSG   YYDGRYW MWKLPMFGC D++ VLREI +C
Sbjct: 94  MIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQEC 153

Query: 479 AKEYPEAFIRVLG 517
              YP  ++RVLG
Sbjct: 154 KTSYPSCWVRVLG 166



 Score = 45.1 bits (105), Expect(2) = 5e-26
 Identities = 27/77 (35%), Positives = 36/77 (46%)
 Frame = +1

Query: 100 RHQSLANIFSGLKATTLFAPQSPYPLALSQGARVSAMLVWKPYALTSSSRHCPTCSPLPS 279
           R  S    FSGLK+ TLF  +S    ++  G+RV  M VW P              PL  
Sbjct: 26  RESSSVKAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETF-SYLPPLSD 84

Query: 280 EQIAKHVDFSGAKRLDP 330
           +QIA+ VD+   + L P
Sbjct: 85  DQIARQVDYMIQQNLIP 101


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score = 92.8 bits (229), Expect(2) = 1e-25
 Identities = 40/70 (57%), Positives = 49/70 (70%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAKE 487
           ++++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI +C K 
Sbjct: 94  MIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECKKT 153

Query: 488 YPEAFIRVLG 517
           +P  F+RVLG
Sbjct: 154 FPGCFVRVLG 163



 Score = 47.8 bits (112), Expect(2) = 1e-25
 Identities = 31/100 (31%), Positives = 49/100 (49%)
 Frame = +1

Query: 31  TQYSVWPSPYPASTAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLALSQGARVSAM 210
           T   V P+ + AS++ V         +    FSGLK++TLF+ ++    ++  G+RV  M
Sbjct: 7   TSTVVAPAAFAASSSAVSTS----ESTSVKAFSGLKSSTLFSSKAQSLSSVQNGSRVQCM 62

Query: 211 LVWKPYALTSSSRHCPTCSPLPSEQIAKHVDFSGAKRLDP 330
            VW P  +T          PL  + IAK VD+   ++L P
Sbjct: 63  QVWNPIGMTKFETF-SYLPPLSDDAIAKQVDYMIQQKLIP 101


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score = 97.8 bits (242), Expect(2) = 2e-25
 Identities = 42/73 (57%), Positives = 55/73 (75%), Gaps = 3/73 (4%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIAQC 478
           ++++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI +C
Sbjct: 94  MIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQEC 153

Query: 479 AKEYPEAFIRVLG 517
             ++P  ++RVLG
Sbjct: 154 KSQFPSCWVRVLG 166



 Score = 42.4 bits (98), Expect(2) = 2e-25
 Identities = 26/69 (37%), Positives = 34/69 (49%)
 Frame = +1

Query: 124 FSGLKATTLFAPQSPYPLALSQGARVSAMLVWKPYALTSSSRHCPTCSPLPSEQIAKHVD 303
           FSGLK  TLF+ ++    A+  G+RV  M VW P              PL  +QIAK VD
Sbjct: 34  FSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETF-SYLPPLTDDQIAKQVD 92

Query: 304 FSGAKRLDP 330
           +   + L P
Sbjct: 93  YMIQQNLIP 101


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score = 94.0 bits (232), Expect(2) = 2e-25
 Identities = 40/70 (57%), Positives = 50/70 (71%)
 Frame = +2

Query: 308 VVRKGWTPCIEFD*IGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAQCAKE 487
           ++++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI +C K 
Sbjct: 94  MIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECKKT 153

Query: 488 YPEAFIRVLG 517
           +P  F+RVLG
Sbjct: 154 FPGCFVRVLG 163



 Score = 45.8 bits (107), Expect(2) = 2e-25
 Identities = 26/90 (28%), Positives = 42/90 (46%)
 Frame = +1

Query: 61  PASTAVVGPHLRPRHQSLANIFSGLKATTLFAPQSPYPLALSQGARVSAMLVWKPYALTS 240
           P + A   P       +    FSGLK+ T+F+ ++    ++  G+RV  M VW P  +T 
Sbjct: 13  PTAFAAASPAASTSGSTTVKAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTK 72

Query: 241 SSRHCPTCSPLPSEQIAKHVDFSGAKRLDP 330
                    PL  + IAK V++   ++L P
Sbjct: 73  FETF-SYLPPLSDDAIAKQVEYMIQQKLIP 101