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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955058
Clone id TST39A01NGRL0022_B11
Library
Length 708
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_B11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCATCTCCATAGCCGCTTCCTCGGCAGTTGTCGCTCCTAGCTGCGCCCCCGCAGAGAGCT
TGTCAAAGAGCTTCTCTGGTCTCAAGGCCACTACCCTGTTCGCCCCCAAGAGCCCCAACC
CGCTCGCCATCTCTAATGGCAGCCGTGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACA
ACAAGAAGTTCGAGACTCTGTCCTACTTGCCGCCTTTGTCAAGTGAGCAGATTGCGAAGC
AGGTGGACTTCATGGTCCGAAAAGGCTGGACCCCTTGCATTGAGTTCGACAAAATCGGGA
GCGTGTACCGAGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGT
GGAAGCTGCCCATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGT
GCGCCAAGGAGTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTAAGAGGCAGG
TGCAGGTCTCCGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCA
ATTTAGTTGGCATGAATGCCTGCTTCCCATTTCCCACTGGCGCCTAACAAGCTTGCTCTT
ATGAGCTTTTGTGTCCCAGCCACTTTGCATACATAATGAAACAACTTCCCAGGGGGTGGC
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 157
Score (bit) 187.0
E-value 3.0e-47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955058|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_B11, 5'
         (662 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai...   187   3e-47
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai...   184   3e-46
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha...   183   8e-46
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha...   182   1e-45
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai...   182   2e-45
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai...   181   4e-45
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai...   181   4e-45
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai...   180   5e-45
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch...   180   7e-45
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai...   179   9e-45
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha...   179   9e-45
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha...   179   1e-44
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai...   179   2e-44
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch...   179   2e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai...   178   3e-44
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha...   178   3e-44
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha...   178   3e-44
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai...   177   3e-44
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch...   177   3e-44
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch...   177   4e-44
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai...   177   6e-44
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha...   176   8e-44
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha...   176   8e-44
sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha...   176   8e-44
sp|O65194|RBS_MEDSA Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai...   176   1e-43
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha...   176   1e-43
sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai...   175   2e-43
sp|Q08186|RBS6_MESCR Ribulose bisphosphate carboxylase small cha...   175   2e-43

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
          Length = 181

 Score =  187 bits (476), Expect = 3e-47
 Identities = 89/157 (56%), Positives = 111/157 (70%), Gaps = 5/157 (3%)
 Frame = +3

Query: 57  SLSKSFSGLKATTLF--APKSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 224
           SL+  F+GLK+   F    K+ N  +   SNG RV  M VW P   KK+ETLSYLPPLS 
Sbjct: 21  SLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 225 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 401
           E ++K++D+++R  W PC+EF+ + G VYREH H  GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81  EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 402 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 512
           ++E+ EC KEYP AFIRV+GFD  RQVQ   F+V KP
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1
          Length = 182

 Score =  184 bits (468), Expect = 3e-46
 Identities = 90/157 (57%), Positives = 112/157 (71%), Gaps = 5/157 (3%)
 Frame = +3

Query: 57  SLSKSFSGLKATTLF--APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 224
           S+   F+ LK+T+ F    K+ N +    SNG RV  M VW P   KKFETLSYLPPLSS
Sbjct: 23  SMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSS 82

Query: 225 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 401
           EQ+AK+VD+++RK   PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC D++ V
Sbjct: 83  EQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQV 142

Query: 402 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 512
           L+E+ EC K YP AFIR++GFD KRQVQ+  F+  KP
Sbjct: 143 LKELEECKKAYPSAFIRIIGFDNKRQVQIISFIAYKP 179


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
          Length = 177

 Score =  183 bits (464), Expect = 8e-46
 Identities = 88/157 (56%), Positives = 109/157 (69%), Gaps = 4/157 (2%)
 Frame = +3

Query: 57  SLSKSFSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 224
           S+   F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS 
Sbjct: 21  SMVAPFNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSV 80

Query: 225 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 404
           E +AK+VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+
Sbjct: 81  EDLAKEVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVI 140

Query: 405 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
            E+ E  K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 141 AEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
           SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
          Length = 177

 Score =  182 bits (462), Expect = 1e-45
 Identities = 87/152 (57%), Positives = 107/152 (70%), Gaps = 4/152 (2%)
 Frame = +3

Query: 72  FSGLKATTLFAP--KSPNPLAI--SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 239
           F+GL+++  F    K+ N L+   SNG RVS M VW P   KKFETLSYLPPLS E +AK
Sbjct: 26  FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 240 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 419
           +VD+++R  W PCIEF K G VYRE+    GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86  EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 420 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
             K YPE F+R++GFD KRQVQ   F+  KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
           SV=1
          Length = 178

 Score =  182 bits (461), Expect = 2e-45
 Identities = 84/148 (56%), Positives = 103/148 (69%)
 Frame = +3

Query: 69  SFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQVD 248
           S +    T  FA  S  P   SNG RV  M VW P   KKFETLSYLPPL+ EQ+ ++VD
Sbjct: 31  SSAAFPVTRKFADSSKLP---SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVD 87

Query: 249 FMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAK 428
           +++R GW PCIEF K+G VYRE+ +  GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K
Sbjct: 88  YLIRNGWIPCIEFCKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSK 147

Query: 429 EYPEAFIRVLGFDAKRQVQVSGFLVQKP 512
            YP+ F R++GFD  RQVQ   FL  KP
Sbjct: 148 AYPDYFNRIIGFDNTRQVQCISFLTYKP 175


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
          Length = 171

 Score =  181 bits (458), Expect = 4e-45
 Identities = 86/156 (55%), Positives = 108/156 (69%), Gaps = 8/156 (5%)
 Frame = +3

Query: 69  SFSGLKATTLFAP--KSPNPLA------ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 224
           +F+GLK+T  F    K  N  A       SNG RV  M VW P+ N KFETLSYLP L+ 
Sbjct: 15  AFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTE 74

Query: 225 EQIAKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 404
           EQ+ K+V++++R  W PC+EFD  GS+ R++    GYYDGRYWVMWKLPMFGC +A+ V+
Sbjct: 75  EQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVI 134

Query: 405 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 512
            E+ ECAK YP+AFIRV+GFD  RQVQ   F+V KP
Sbjct: 135 NEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170


>sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1
          Length = 187

 Score =  181 bits (458), Expect = 4e-45
 Identities = 86/162 (53%), Positives = 108/162 (66%), Gaps = 5/162 (3%)
 Frame = +3

Query: 57  SLSKSFSGLKATTLFAPKSPNPLAI----SNGSRVSAMLVWKPYDNKKFETLSYLPPLSS 224
           S+  SF+GLK+   F       L I    SNG RV  MLVW P + KK+ETLSYLP LS 
Sbjct: 21  SMIASFNGLKSAASFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSD 80

Query: 225 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 401
           EQ+ K+++++++KGW PC+EF+ + G VYREH    GYYDGRYW MWKLPMFGC DA  V
Sbjct: 81  EQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQV 140

Query: 402 LREIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV*TF 527
           L E+ E  K YP+A+IR++GFD  RQVQ   F+  KP    F
Sbjct: 141 LNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEATKF 182


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
          Length = 178

 Score =  180 bits (457), Expect = 5e-45
 Identities = 86/158 (54%), Positives = 113/158 (71%), Gaps = 4/158 (2%)
 Frame = +3

Query: 57  SLSKSFSGLKATTLF-APKSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSE 227
           +L+  F+GLK++  F   K  N +    SNGSRV+ M VW P   KKFETLSYLPPL+ E
Sbjct: 20  NLATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDE 79

Query: 228 QIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVL 404
           Q+ K+V++++RKGW PC+EF+ + G V+R++    GYYDGRYW MW+LP+FG  DAA VL
Sbjct: 80  QLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVL 139

Query: 405 REIAECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPSV 518
           +E+AEC  EYPEAFIR++GFD  RQVQ   F+   P V
Sbjct: 140 KEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
           1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
           PE=1 SV=2
          Length = 180

 Score =  180 bits (456), Expect = 7e-45
 Identities = 84/152 (55%), Positives = 108/152 (71%), Gaps = 5/152 (3%)
 Frame = +3

Query: 72  FSGLKATTLFAP--KSPNPLA--ISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAK 239
           F+GLK++  F    K+ N +    SNG RV+ M VW P   KKFETLSYLP L+  ++AK
Sbjct: 24  FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 240 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 416
           +VD+++R  W PC+EF+ + G VYREH +  GYYDGRYW MWKLP+FGC D+A VL+E+ 
Sbjct: 84  EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 417 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKP 512
           EC KEYP AFIR++GFD  RQVQ   F+  KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chain,
           chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1
          Length = 183

 Score =  179 bits (455), Expect = 9e-45
 Identities = 86/152 (56%), Positives = 111/152 (73%), Gaps = 4/152 (2%)
 Frame = +3

Query: 72  FSGLKATTLF--APKSPNPLAI-SNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQ 242
           F+GLK+++ F    KS +  +I SNG RV  M VW P   KKFETLSYLPPLSSE +AK+
Sbjct: 30  FNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKE 89

Query: 243 VDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 419
           VD+++RK W PC+EF+ + G VYRE+    GYYDGRYW MWKLPMFGC D++ VL+E+ E
Sbjct: 90  VDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEE 149

Query: 420 CAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
             K YP++FIR++GFD  RQVQ   F+  KP+
Sbjct: 150 AKKAYPQSFIRIIGFDNVRQVQCISFIAYKPA 181
tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 154
Score (bit) 292.0
E-value 1.0e-77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955058|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_B11, 5'
         (662 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c...   292   1e-77
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c...   204   5e-51
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c...   201   4e-50
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c...   200   7e-50
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c...   200   7e-50
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c...   200   7e-50
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c...   197   5e-49
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c...   191   5e-47
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c...   190   6e-47
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c...   190   6e-47
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c...   190   8e-47
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c...   187   4e-46
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c...   187   5e-46
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c...   186   9e-46
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c...   186   9e-46
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c...   186   1e-45
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c...   185   2e-45
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c...   184   3e-45
tr|A0FIP7|A0FIP7_CAMSI Ribulose bisphosphate carboxylase small c...   184   6e-45
tr|A9S8M9|A9S8M9_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9S8M6|A9S8M6_PHYPA Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c...   182   1e-44
tr|A9RG04|A9RG04_PHYPA Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c...   182   2e-44
tr|A9U377|A9U377_PHYPA Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c...   181   4e-44
tr|Q6RWD8|Q6RWD8_CAPAN Ribulose bisphosphate carboxylase small c...   180   6e-44
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c...   180   8e-44

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
           chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
          Length = 174

 Score =  292 bits (748), Expect = 1e-77
 Identities = 136/154 (88%), Positives = 147/154 (95%)
 Frame = +3

Query: 54  ESLSKSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQI 233
           ESLSKSFSGLKA TLFAPK  NPLAISNGSR+SAMLVWKPYDNKKFETLSYLPPL+++QI
Sbjct: 20  ESLSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQI 79

Query: 234 AKQVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREI 413
           AKQV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREI
Sbjct: 80  AKQVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREI 139

Query: 414 AECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           AECAKEYP AFIRVLGFDAKRQVQV+GFLV+KPS
Sbjct: 140 AECAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87740 PE=3 SV=1
          Length = 179

 Score =  204 bits (518), Expect = 5e-51
 Identities = 95/153 (62%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K FSGLK+TTLFA K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 416
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 417 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_87752 PE=3 SV=1
          Length = 179

 Score =  201 bits (510), Expect = 4e-50
 Identities = 94/153 (61%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K FSGLK+TTL A K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 27  KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 416
           DFM+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D+A VLREI 
Sbjct: 87  DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 417 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           EC + +P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
           chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
          Length = 214

 Score =  200 bits (508), Expect = 7e-50
 Identities = 91/153 (59%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K+FSGLK+ TLF+ K+    ++ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 62  KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 416
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 417 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
           PE=2 SV=1
          Length = 184

 Score =  200 bits (508), Expect = 7e-50
 Identities = 92/153 (60%), Positives = 114/153 (74%), Gaps = 3/153 (1%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K+FSGLK+ TLF  KS    ++ NGSRV  M VW P    KFET SYLPPLS +QIA+QV
Sbjct: 32  KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 416
           D+M+++   PCIEFD +G+V R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 417 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           EC   YP  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_221004 PE=3 SV=1
          Length = 184

 Score =  200 bits (508), Expect = 7e-50
 Identities = 92/153 (60%), Positives = 115/153 (75%), Gaps = 3/153 (1%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K+FSGLK  TLF+ K+    A+ NGSRV  M VW P    KFET SYLPPL+ +QIAKQV
Sbjct: 32  KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 416
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 92  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 417 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_225236 PE=3 SV=1
          Length = 183

 Score =  197 bits (501), Expect = 5e-49
 Identities = 89/153 (58%), Positives = 116/153 (75%), Gaps = 3/153 (1%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K+FSGLK+ TLF+ ++    ++ NGSRV  M VW P    KFET SYLPPL+ ++IAKQV
Sbjct: 31  KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 416
           D+M+++   PCIEFD +GSV R +F G   SGYYDGRYW MWKLPMFGC D++ VLREI 
Sbjct: 91  DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 417 ECAKEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           EC  ++P  ++RVLGFD+K+QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_115069 PE=3 SV=1
          Length = 181

 Score =  191 bits (484), Expect = 5e-47
 Identities = 87/150 (58%), Positives = 109/150 (72%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K+FSGLK+ T+F+ K+ N  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 425
           ++M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 426 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_146969 PE=3 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 6e-47
 Identities = 88/150 (58%), Positives = 109/150 (72%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K+FSGLK++TLF+ K+ +  ++ NGSRV  M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 425
           D+M+++   PC+EFD    V R +    GYYDGRYW MWKLPMFGCQD A VLREI EC 
Sbjct: 92  DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 426 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
           chain OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_123666 PE=3 SV=1
          Length = 181

 Score =  190 bits (483), Expect = 6e-47
 Identities = 88/150 (58%), Positives = 110/150 (73%)
 Frame = +3

Query: 66  KSFSGLKATTLFAPKSPNPLAISNGSRVSAMLVWKPYDNKKFETLSYLPPLSSEQIAKQV 245
           K+FSGLK+ TLF+ +S    ++ NGSRV+ M VW P    KFET SYLPPLS + IAKQV
Sbjct: 32  KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 246 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 425
           ++M+++   PC+EFD    V RE+    GYYDGRYW MWKLPMFGCQD+A VLREI EC 
Sbjct: 92  EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 426 KEYPEAFIRVLGFDAKRQVQVSGFLVQKPS 515
           K +P  F+RVLGFD  +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181