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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955073
Clone id TST39A01NGRL0022_C02
Library
Length 633
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_C02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCTCTCTCTCTCTCACACACACACACACACACACGAGTTGGGCGCTTGCGCGCGCGTGT
ACAACGAACTCGAACTCTGATCTTGCCCGGCAGGTGCCAGAGTTTTCTGTTATATAAACC
GGAAGAGCGTCAGCGTCGCTAGTCTGCACAGCGAATGGGGCTCTTGGGGCTTGCAAAGAA
GATGCCAGCCTCACCTCCAGCATGCTTGCCTGCGCTTTGCCCTCCCCCTTCCTGCTTCAT
TCCTTCAAGCTCTTGTCTCAGAAGAAGAGCTTGCTTTCCCGCTCCCTTAGCTGGAGGAGC
TAAAGGGAGAGATTGGATGCAGGCTGCAGATCAGTGGCAATCCAAACGGCTCTTGATTGT
GATGAACGCTGTCGAAAATCAAGGCAATGTTGCCACGGAAGATATGAGTGACAATAAGAT
TTTACCGTATTGCAGCATCGACAAGAAAGCAGATAAGCGCTCTTTAGGGGAACTTGAGGC
AGAGTTTCTGGAAGCTCTCCAGTCATTCTACTATGACAAGAAACCTATGATGTCCAATGA
AGAGTTTGACAACCTCAAGGAGGAACTCATCTGGGAGGGCAGCAGTGTGGTTATCTTAAG
TGCTGATGAGCAGAGGTTTATGGAAGCTTCTTT
■■Homology search results ■■ -
sp_hit_id Q8GYC7
Definition sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Arabidopsis thaliana
Align length 94
Score (bit) 99.8
E-value 1.0e-20
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955073|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_C02, 5'
         (633 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic OS=Ara...   100   1e-20
sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic OS=Ara...    98   3e-20
sp|Q99N34|DFFB_RAT DNA fragmentation factor subunit beta OS=Ratt...    33   0.93 
sp|O54788|DFFB_MOUSE DNA fragmentation factor subunit beta OS=Mu...    33   1.2  
sp|Q9V333|JHD3A_DROME Probable JmjC domain-containing histone de...    31   6.1  

>sp|Q8GYC7|PGL1B_ARATH PGR5-like protein 1B, chloroplastic
           OS=Arabidopsis thaliana GN=PGRL1B PE=1 SV=1
          Length = 313

 Score = 99.8 bits (247), Expect = 1e-20
 Identities = 53/94 (56%), Positives = 68/94 (72%)
 Frame = +2

Query: 350 LLIVMNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPM 529
           LL +  + +  G V  E++ D+KILPYCSI+K  +KR+            QSFYY+ K +
Sbjct: 45  LLPLKASTDQSGQVGGEEV-DSKILPYCSINKN-EKRTIGEMEQEFLQAMQSFYYEGKAI 102

Query: 530 MSNEEFDNLKEELIWEGSSVVILSADEQRFMEAS 631
           MSNEEFDNLKEEL+WEGSSVV+LS+DEQRF+EAS
Sbjct: 103 MSNEEFDNLKEELMWEGSSVVMLSSDEQRFLEAS 136


>sp|Q8H112|PGL1A_ARATH PGR5-like protein 1A, chloroplastic
           OS=Arabidopsis thaliana GN=PGRL1A PE=1 SV=1
          Length = 324

 Score = 98.2 bits (243), Expect = 3e-20
 Identities = 51/93 (54%), Positives = 63/93 (67%)
 Frame = +2

Query: 353 LIVMNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMM 532
           L+   A   Q      D  D+ +LPYCSI+K A+K++            QSFYYD K +M
Sbjct: 56  LLPAKATTEQSGPVGGDNVDSNVLPYCSINK-AEKKTIGEMEQEFLQALQSFYYDGKAIM 114

Query: 533 SNEEFDNLKEELIWEGSSVVILSADEQRFMEAS 631
           SNEEFDNLKEEL+WEGSSVV+LS+DEQRF+EAS
Sbjct: 115 SNEEFDNLKEELMWEGSSVVMLSSDEQRFLEAS 147


>sp|Q99N34|DFFB_RAT DNA fragmentation factor subunit beta OS=Rattus
           norvegicus GN=Dffb PE=2 SV=1
          Length = 349

 Score = 33.5 bits (75), Expect = 0.93
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 123 KSVSVASLHSEWGSWGLQRRCQPHLQHACLRFALPLPASFL 245
           K V + +LHS        R CQ  L+  C+RF LP+P S L
Sbjct: 9   KCVKLRALHSSCKFGVAARSCQELLRKGCIRFQLPVPGSRL 49


>sp|O54788|DFFB_MOUSE DNA fragmentation factor subunit beta OS=Mus
           musculus GN=Dffb PE=1 SV=1
          Length = 344

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 123 KSVSVASLHSEWGSWGLQRRCQPHLQHACLRFALPLPASFL 245
           K V + +LHS        R CQ  L+  C+RF LP+P S L
Sbjct: 9   KCVKLRALHSACKFGVAARSCQELLRKGCVRFQLPMPGSRL 49


>sp|Q9V333|JHD3A_DROME Probable JmjC domain-containing histone
           demethylation protein 3A OS=Drosophila melanogaster
           GN=CG15835 PE=1 SV=1
          Length = 495

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = -3

Query: 199 WR*GWHLLCKPQEPHSLCRLATLTLFRFI*QKTLAPAGQDQSSSSLYTRAQAPNSC 32
           W  G  + C P+EP  +C  A  TL  +  Q+ L  A  ++ S      + A N C
Sbjct: 339 WLKGQDMGCHPEEPGKICAAAPPTLNEYEKQENLRAAKSEEESPQKRGCSLAGNGC 394
tr_hit_id A9NWM0
Definition tr|A9NWM0|A9NWM0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 115
Score (bit) 114.0
E-value 6.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955073|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_C02, 5'
         (633 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NWM0|A9NWM0_PICSI Putative uncharacterized protein OS=Picea...   114   6e-24
tr|A7QKC6|A7QKC6_VITVI Chromosome chr2 scaffold_112, whole genom...   110   9e-23
tr|Q84M73|Q84M73_ORYSJ Os03g0857400 protein OS=Oryza sativa subs...    99   2e-19
tr|B8ANS3|B8ANS3_ORYSI Putative uncharacterized protein OS=Oryza...    99   2e-19
tr|A3APX8|A3APX8_ORYSJ Putative uncharacterized protein OS=Oryza...    99   2e-19
tr|A9T0F2|A9T0F2_PHYPA Predicted protein OS=Physcomitrella paten...    98   4e-19
tr|A9PGK5|A9PGK5_POPTR Putative uncharacterized protein OS=Popul...    98   4e-19
tr|B4FY30|B4FY30_MAIZE Putative uncharacterized protein OS=Zea m...    97   6e-19
tr|B4FTA7|B4FTA7_MAIZE Putative uncharacterized protein OS=Zea m...    97   6e-19
tr|B8B8V8|B8B8V8_ORYSI Putative uncharacterized protein OS=Oryza...    97   1e-18
tr|Q7F1E4|Q7F1E4_ORYSJ Os08g0526300 protein OS=Oryza sativa subs...    96   2e-18
tr|A8ITK6|A8ITK6_CHLRE Predicted protein OS=Chlamydomonas reinha...    78   4e-13
tr|Q6YS51|Q6YS51_ORYSJ Os08g0310500 protein OS=Oryza sativa subs...    77   7e-13
tr|A2Y1Z1|A2Y1Z1_ORYSI Putative uncharacterized protein OS=Oryza...    72   3e-11
tr|A3BV17|A3BV17_ORYSJ Putative uncharacterized protein OS=Oryza...    68   5e-10
tr|B7FRN6|B7FRN6_PHATR Predicted protein OS=Phaeodactylum tricor...    45   0.003
tr|B8CCJ2|B8CCJ2_THAPS Predicted protein OS=Thalassiosira pseudo...    45   0.004
tr|B8BZQ3|B8BZQ3_THAPS Putative uncharacterized protein OS=Thala...    44   0.011
tr|Q00ZC0|Q00ZC0_OSTTA Putative heme activated protein (ISS) OS=...    36   2.2  
tr|A4S4C0|A4S4C0_OSTLU Predicted protein OS=Ostreococcus lucimar...    35   2.9  

>tr|A9NWM0|A9NWM0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 350

 Score =  114 bits (284), Expect = 6e-24
 Identities = 61/115 (53%), Positives = 77/115 (66%), Gaps = 13/115 (11%)
 Frame = +2

Query: 326 ADQWQSKR-----------LLIVMNAVENQ--GNVATEDMSDNKILPYCSIDKKADKRSX 466
           +++WQS+             LIVM A E Q  G V  E++ DN ILPYCSIDKK++KR+ 
Sbjct: 42  SEEWQSRSGRCYTTTTKRPPLIVMQATEQQQQGQVKEEEIVDNNILPYCSIDKKSEKRTL 101

Query: 467 XXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADEQRFMEAS 631
                      QSFY++KK  M+NEEFD+LKEEL+WEGSSVV+LS DEQ+FMEAS
Sbjct: 102 GELEQDFLEALQSFYFEKKSTMTNEEFDHLKEELMWEGSSVVMLSPDEQKFMEAS 156


>tr|A7QKC6|A7QKC6_VITVI Chromosome chr2 scaffold_112, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00001064001
           PE=4 SV=1
          Length = 326

 Score =  110 bits (274), Expect = 9e-23
 Identities = 58/99 (58%), Positives = 72/99 (72%), Gaps = 2/99 (2%)
 Frame = +2

Query: 341 SKRLLIVMN--AVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYY 514
           S+RL I+      + QG V  +D+ D+KILPYCSIDKK +KRS            QSFYY
Sbjct: 52  SRRLFIISPKATADQQGQVQGDDVVDSKILPYCSIDKK-EKRSIGEMEQDFLQALQSFYY 110

Query: 515 DKKPMMSNEEFDNLKEELIWEGSSVVILSADEQRFMEAS 631
           + K +MSNEEFDNLKEEL+WEGSSVV+LS+DEQ+F+EAS
Sbjct: 111 EGKAIMSNEEFDNLKEELMWEGSSVVMLSSDEQKFLEAS 149


>tr|Q84M73|Q84M73_ORYSJ Os03g0857400 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0059G06.17 PE=2 SV=1
          Length = 324

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
 Frame = +2

Query: 260 RRRACFPAPLAGGAKGRDWMQAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSI 439
           RR +C  A    G + R  + A DQ Q             QG    +++ D+ +L YCSI
Sbjct: 37  RRSSCALATSTRGRRLR--LGATDQQQQ------------QGKQDGDEVVDSNVLQYCSI 82

Query: 440 D---KKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADE 610
           D   KKA+KRS            Q+FYYD+K +MSNEEFDNLKEEL+WEGSSVV+LS DE
Sbjct: 83  DGKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEEFDNLKEELMWEGSSVVMLSPDE 142

Query: 611 QRFMEAS 631
           QR +EAS
Sbjct: 143 QRLLEAS 149


>tr|B8ANS3|B8ANS3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14406 PE=4 SV=1
          Length = 322

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
 Frame = +2

Query: 260 RRRACFPAPLAGGAKGRDWMQAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSI 439
           RR +C  A    G + R  + A DQ Q             QG    +++ D+ +L YCSI
Sbjct: 35  RRSSCALATSTRGRRLR--LGATDQQQQ------------QGKQDGDEVVDSNVLQYCSI 80

Query: 440 D---KKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADE 610
           D   KKA+KRS            Q+FYYD+K +MSNEEFDNLKEEL+WEGSSVV+LS DE
Sbjct: 81  DGKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEEFDNLKEELMWEGSSVVMLSPDE 140

Query: 611 QRFMEAS 631
           QR +EAS
Sbjct: 141 QRLLEAS 147


>tr|A3APX8|A3APX8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_012850 PE=4 SV=1
          Length = 299

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 60/127 (47%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
 Frame = +2

Query: 260 RRRACFPAPLAGGAKGRDWMQAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSI 439
           RR +C  A    G + R  + A DQ Q             QG    +++ D+ +L YCSI
Sbjct: 35  RRSSCALATSTRGRRLR--LGATDQQQQ------------QGKQDGDEVVDSNVLQYCSI 80

Query: 440 D---KKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADE 610
           D   KKA+KRS            Q+FYYD+K +MSNEEFDNLKEEL+WEGSSVV+LS DE
Sbjct: 81  DGKGKKAEKRSLGEMEQEFLQALQAFYYDQKAIMSNEEFDNLKEELMWEGSSVVMLSPDE 140

Query: 611 QRFMEAS 631
           QR +EAS
Sbjct: 141 QRLLEAS 147


>tr|A9T0F2|A9T0F2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_138266 PE=4 SV=1
          Length = 287

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 50/90 (55%), Positives = 62/90 (68%)
 Frame = +2

Query: 362 MNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNE 541
           M A  N  +  ++   D+K+LPYC I+KK  K++            QSFY+D KP+MSNE
Sbjct: 1   MQASSNGNDPGSDSEVDDKVLPYCDINKK-QKKTLGEMEQDFLEALQSFYFDSKPIMSNE 59

Query: 542 EFDNLKEELIWEGSSVVILSADEQRFMEAS 631
           EFD LKEEL WEGSSVVILS+DEQRF+EAS
Sbjct: 60  EFDLLKEELTWEGSSVVILSSDEQRFLEAS 89


>tr|A9PGK5|A9PGK5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 323

 Score = 98.2 bits (243), Expect = 4e-19
 Identities = 50/88 (56%), Positives = 62/88 (70%)
 Frame = +2

Query: 368 AVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMSNEEF 547
           A +    V  +DM D KIL YCSIDKK  K+S            Q+FYY+ K +MSNEEF
Sbjct: 60  ADQQTDQVQEDDMDDGKILQYCSIDKKG-KKSLGEMEQDFLQALQAFYYEGKAIMSNEEF 118

Query: 548 DNLKEELIWEGSSVVILSADEQRFMEAS 631
           DNLKEEL+W+GSSVV+LS+DEQ+F+EAS
Sbjct: 119 DNLKEELMWQGSSVVMLSSDEQKFLEAS 146


>tr|B4FY30|B4FY30_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 157

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
 Frame = +2

Query: 362 MNAVENQGNVATED--MSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMS 535
           + A E QG V  +D  + D  ILPYCSID+K  K++            Q+FYYD+K +MS
Sbjct: 56  LRATEQQGQVQEQDDEVVDRNILPYCSIDRK-QKKTLGEMEQEFLQALQAFYYDQKAIMS 114

Query: 536 NEEFDNLKEELIWEGSSVVILSADEQRFMEAS 631
           NEEFDNLKEEL+WEGSSVV+L+ DEQ+ +EAS
Sbjct: 115 NEEFDNLKEELMWEGSSVVMLNEDEQKLLEAS 146


>tr|B4FTA7|B4FTA7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 322

 Score = 97.4 bits (241), Expect = 6e-19
 Identities = 50/92 (54%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
 Frame = +2

Query: 362 MNAVENQGNVATED--MSDNKILPYCSIDKKADKRSXXXXXXXXXXXXQSFYYDKKPMMS 535
           + A E QG V  +D  + D  ILPYCSID+K  K++            Q+FYYD+K +MS
Sbjct: 56  LRATEQQGQVQEQDDEVVDRNILPYCSIDRK-QKKTLGEMEQEFLQALQAFYYDQKAIMS 114

Query: 536 NEEFDNLKEELIWEGSSVVILSADEQRFMEAS 631
           NEEFDNLKEEL+WEGSSVV+L+ DEQ+ +EAS
Sbjct: 115 NEEFDNLKEELMWEGSSVVMLNEDEQKLLEAS 146


>tr|B8B8V8|B8B8V8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29970 PE=4 SV=1
          Length = 326

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 54/104 (51%), Positives = 69/104 (66%)
 Frame = +2

Query: 320 QAADQWQSKRLLIVMNAVENQGNVATEDMSDNKILPYCSIDKKADKRSXXXXXXXXXXXX 499
           QAADQ Q ++        EN+  V      D+ +LPYCSI++K +K++            
Sbjct: 54  QAADQQQQQQ-------EENEDGVV-----DSNVLPYCSINRK-EKKTIGEMEQEFLQAL 100

Query: 500 QSFYYDKKPMMSNEEFDNLKEELIWEGSSVVILSADEQRFMEAS 631
           Q+FYYDKK +MSNEEFDNLKEEL+WEGSSVV+LS DEQR +EAS
Sbjct: 101 QAFYYDKKAVMSNEEFDNLKEELMWEGSSVVMLSPDEQRLLEAS 144