DK955089 |
Clone id |
TST39A01NGRL0022_C18 |
Library |
TST39 |
Length |
505 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_C18. 5' end sequence. |
Accession |
DK955089 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1735Contig1 |
Sequence |
TTTTAACCTACCCTAAAGGTCTGTGTTGTGGCTATGGCGCAACCCAGCATGGTGCAGAAG TTGAAGCAACTAGTAGCGACCGAGTTTGGAAACGACGAAAAATTTGCCGCCAACATGAGG CTGCTGAAGGCTCTTGCAATGTTTGGGGGAGGAATCATTCTCATGCGGAACTATGGTGAT CTCATGTCTAATTGAACAACTTCATGGTGAACTCTTTCACAGGAATAGATGCCATGTAAT TTTGCCCTTGGAAACATTTGGACTTGAAGTCTTGGTTCAGTTATACCAATGAACATTCCT TTTCTCGTCGTCGTCGACTGTGGATCTAGCGGATGCGGTAGTATGGATGGTCTACAGAAT ATTTGTATGACACGGTCAAGACTGCGGACCAAGACCAGTATTTGTGTTTTGACTCCTTCC AAGTACAGTAGTTGGTTTTAATGTAGTTTTTGTGTCTTAGGAAAAAAAAAAAAAAAAAGA AAATTAAAAGAAAGATAAACCCCAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SD80 |
Definition |
sp|Q9SD80|TOM5_ARATH Mitochondrial import receptor subunit TOM5 homolog OS=Arabidopsis thaliana |
Align length |
45 |
Score (bit) |
57.0 |
E-value |
4.0e-08 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q6IDR6 |
Definition |
tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana |
Align length |
45 |
Score (bit) |
57.0 |
E-value |
5.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955089|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_C18, 5' (461 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana PE=4 SV=1 57 5e-07 tr|B6SPH3|B6SPH3_MAIZE Putative uncharacterized protein OS=Zea m... 54 4e-06 tr|A9NJT9|A9NJT9_PICSI Putative uncharacterized protein OS=Picea... 54 4e-06 tr|A8HV84|A8HV84_CHLRE Translocase of mitochondrial membrane OS=... 47 5e-04 tr|A7QI05|A7QI05_VITVI Chromosome chr17 scaffold_101, whole geno... 43 0.009 tr|Q2QN85|Q2QN85_ORYSJ cDNA clone:001-021-F10, full insert seque... 42 0.012 tr|A2ZLY7|A2ZLY7_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.012 tr|Q60HI1|Q60HI1_EPTBU Novel ITAM-containing IgSF receptor OS=Ep... 39 0.17 tr|A9TRT7|A9TRT7_PHYPA Predicted protein (Fragment) OS=Physcomit... 35 1.4 tr|B6TQS4|B6TQS4_MAIZE Putative uncharacterized protein OS=Zea m... 35 2.4 tr|Q4Q1S4|Q4Q1S4_LEIMA Putative uncharacterized protein OS=Leish... 34 4.1 tr|A4IDC1|A4IDC1_LEIIN Putative uncharacterized protein OS=Leish... 34 4.1 tr|A4HP12|A4HP12_LEIBR Putative uncharacterized protein OS=Leish... 34 4.1 tr|A8NLJ2|A8NLJ2_COPC7 Predicted protein OS=Coprinopsis cinerea ... 33 7.0
>tr|Q6IDR6|Q6IDR6_ARATH At5g08040 OS=Arabidopsis thaliana PE=4 SV=1 Length = 54
Score = 57.0 bits (136), Expect = 5e-07 Identities = 24/45 (53%), Positives = 37/45 (82%) Frame = +1
Query: 52 VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 186 ++K+K L +E +++K+A NM+LL+AL MF GG++LMR+YGDLM Sbjct: 8 IEKMKALWHSEVHDEQKWAVNMKLLRALGMFAGGVVLMRSYGDLM 52
>tr|B6SPH3|B6SPH3_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 53
Score = 53.9 bits (128), Expect = 4e-06 Identities = 26/52 (50%), Positives = 37/52 (71%) Frame = +1
Query: 34 MAQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 189 MA S V+KLK L ++ ++E++A N +LLKA +F G I LMRN+GDLM+ Sbjct: 1 MAASSAVEKLKVLWDSQVNDEEQWALNYKLLKAAGLFAGSIFLMRNFGDLMA 52
>tr|A9NJT9|A9NJT9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 54
Score = 53.9 bits (128), Expect = 4e-06 Identities = 24/47 (51%), Positives = 36/47 (76%) Frame = +1
Query: 49 MVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 189 +++KLKQ + ++EK+AANMRLL+A +F G I LMRN+G+LM+ Sbjct: 7 VIEKLKQTWNAQVQDEEKWAANMRLLRAAGLFAGSIFLMRNFGELMA 53
>tr|A8HV84|A8HV84_CHLRE Translocase of mitochondrial membrane OS=Chlamydomonas reinhardtii GN=TOM5 PE=4 SV=1 Length = 54
Score = 47.0 bits (110), Expect = 5e-04 Identities = 18/51 (35%), Positives = 34/51 (66%) Frame = +1
Query: 34 MAQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLM 186 MA ++ ++ + E+ N+ KF AN+RLL+ +A+FGG + + RN+G+ + Sbjct: 1 MASNDLLTSAQKWLREEYTNEAKFGANLRLLRGIAIFGGAVFVFRNFGEAL 51
>tr|A7QI05|A7QI05_VITVI Chromosome chr17 scaffold_101, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000043001 PE=4 SV=1 Length = 54
Score = 42.7 bits (99), Expect = 0.009 Identities = 18/46 (39%), Positives = 30/46 (65%) Frame = +1
Query: 52 VQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 189 + +K + ++EK+A NM+LL+A +F G I LMRN+G+ M+ Sbjct: 8 LDNIKAFWNAQIHDEEKWALNMKLLRAAGLFAGSIFLMRNFGEYMA 53
>tr|Q2QN85|Q2QN85_ORYSJ cDNA clone:001-021-F10, full insert sequence OS=Oryza sativa subsp. japonica GN=LOC_Os12g38650 PE=4 SV=1 Length = 54
Score = 42.4 bits (98), Expect = 0.012 Identities = 20/51 (39%), Positives = 34/51 (66%) Frame = +1
Query: 37 AQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 189 A + V+K+K L ++ ++E +A N +L+KA +F I +MRN+GDLM+ Sbjct: 3 AAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMA 53
>tr|A2ZLY7|A2ZLY7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38840 PE=4 SV=1 Length = 54
Score = 42.4 bits (98), Expect = 0.012 Identities = 20/51 (39%), Positives = 34/51 (66%) Frame = +1
Query: 37 AQPSMVQKLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 189 A + V+K+K L ++ ++E +A N +L+KA +F I +MRN+GDLM+ Sbjct: 3 AAAAAVEKVKALWDSQVNDEEAWAFNYKLMKAGGLFVASIFVMRNFGDLMA 53
>tr|Q60HI1|Q60HI1_EPTBU Novel ITAM-containing IgSF receptor OS=Eptatretus burgeri GN=NICIR PE=2 SV=1 Length = 347
Score = 38.5 bits (88), Expect = 0.17 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 6/78 (7%) Frame = -1
Query: 416 GVKTQILVLVRSLDRVIQIFCRPSILPHP----LDPQSTTTRKGMFIGITEPRLQVQMFP 249 GV+ +++ L +S++ I++ C+ + P P LDP ST + M TE +LQ+++ P Sbjct: 167 GVQPKLIFLKQSINGTIELTCKATGFPLPNLDLLDPNSTKLKGMMKNNSTEVQLQIKL-P 225
Query: 248 RAKLHGIYSC--ERVHHE 201 + G Y+C +H E Sbjct: 226 ELAIDGKYTCLGRNIHGE 243
>tr|A9TRT7|A9TRT7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_96308 PE=4 SV=1 Length = 169
Score = 35.4 bits (80), Expect = 1.4 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = -1
Query: 305 RKGMFIGITEPRLQVQMFPRAKLHGIYSCER 213 + GMF + EPR++ P K+HG SCER Sbjct: 80 KNGMFAQLLEPRVETNRDPENKIHGTMSCER 110
>tr|B6TQS4|B6TQS4_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 58
Score = 34.7 bits (78), Expect = 2.4 Identities = 15/44 (34%), Positives = 27/44 (61%) Frame = +1
Query: 58 KLKQLVATEFGNDEKFAANMRLLKALAMFGGGIILMRNYGDLMS 189 KL + ++ ++ +A N +L KAL +F G I+ MR GD+++ Sbjct: 14 KLTVFLYSQLYDERNWAKNKKLAKALGVFAGSILFMRTCGDMVA 57
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