DK955093
Clone id TST39A01NGRL0022_C22
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_C22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTCTTCTTTTCCTCTCCTCTCTCCCTTGCTCCCTCATCTCCCTAGCTATGTCTATACGAG
AAGCTATCCGCTTCCGCCGCGCTTCCGCGCCAAAGCCCAACAATTGGTATCAGAGCTTTG
GGGCAAGGTCTTGTAGGTATTCATGAGTTGAGGTATGAAGATGGGCTGCCAAAGAAGTGG
GGTTGGTCTGTGCCATACCAGATGCTGCTAGAGCAAAGGGACTTCTTGGGAGCCATCATC
AGCATGCACGGCTTCGACCTTCCAGGAGATCTCATTCATGGCTTCAGCTATTGTCCGCTG
AATGTTGCAGCGAGAAGGCCGTTGCAATAGTGCTCGCCAGTGGTGCTCTCCTATCTTCCC
CTCGATAATATAGCCTCAGTCGAGATCTCGACAGGCCAAAGGCTCATGAGAAGACAAGCC
TCAAAGGGGCATAGCCAGCCTTGAGACGAGGGCAACAGCCCGGGGGCTGAGCAGACGAAA
CTAGAGATGGCGAATTGGAGGCATGAGGCTCATGCCCGGATCCAGTGATAGAGAGGGGCA
GCAGCAGCACGCGATGAAAGAGGGCTTTGAGAGCACTGCAGAGGGGCGAGTGGTGGCCAG
CACGGGTCACCATGCTGG
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 67
Score (bit) 52.0
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955093|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_C22, 5'
(618 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb... 52 2e-06
sp|Q8YPK5|TRUA_ANASP tRNA pseudouridine synthase A OS=Anabaena s... 33 1.2
sp|Q8TAT2|FGFP3_HUMAN Fibroblast growth factor-binding protein 3... 32 2.6
sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo s... 31 4.5
sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplast... 31 5.8
sp|P44647|PRIA_HAEIN Primosomal protein N' OS=Haemophilus influe... 31 5.9
sp|Q62232|SIX2_MOUSE Homeobox protein SIX2 OS=Mus musculus GN=Si... 30 7.6

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
SV=1
Length = 265

Score = 52.0 bits (123), Expect = 2e-06
Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Frame = -2

Query: 314 LAATFSGQ*LKP*---MRSPGRSKPCMLMMAPKKSLCSSSIWYGTDQP----HFFGSPSS 156
L +TFSGQ LKP R G + + MMAPK S SIWYG+D+P F GSP S
Sbjct: 8 LTSTFSGQQLKPVNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPS 67

Query: 155 YLNS*IP 135
YL+ P
Sbjct: 68 YLSGEFP 74


>sp|Q8YPK5|TRUA_ANASP tRNA pseudouridine synthase A OS=Anabaena sp.
(strain PCC 7120) GN=truA PE=3 SV=1
Length = 282

Score = 33.1 bits (74), Expect = 1.2
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3

Query: 207 ARAKGLLGSHHQHARLRP-SRRSHSWLQLLSAEC 305
A K L+G HH A R S+RSHSW+++ + EC
Sbjct: 152 AALKPLMGKHHLAAFHRAGSKRSHSWVEVQAVEC 185


>sp|Q8TAT2|FGFP3_HUMAN Fibroblast growth factor-binding protein 3
OS=Homo sapiens GN=FGFBP3 PE=1 SV=1
Length = 258

Score = 32.0 bits (71), Expect = 2.6
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3

Query: 165 AAKEVGLVCAIPDAARAKGLLGSHHQHARLRPSRRSHSWLQLL 293
A E+ L C PD AR + H + +RR+H W Q+L
Sbjct: 72 AGSELALRCQSPDGARHQCAYRGHPERCAAYAARRAHFWKQVL 114


>sp|Q5VYM1|CI131_HUMAN Uncharacterized protein C9orf131 OS=Homo
sapiens GN=C9orf131 PE=2 SV=3
Length = 1079

Score = 31.2 bits (69), Expect = 4.5
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = -2

Query: 260 RSKPCMLMMAPKKSLCSSSIWYGTDQPHFFGSPSSYLNS*IPTRPCP 120
R P P +S CSS I T P F+G PS P PCP
Sbjct: 795 RQSPASRAPGPSQSFCSSPILSSTI-PDFWGLPSCPPQQIYPPNPCP 840


>sp|P20866|CB2_PHYPA Chlorophyll a-b binding protein, chloroplastic
OS=Physcomitrella patens PE=3 SV=1
Length = 269

Score = 30.8 bits (68), Expect = 5.8
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = -2

Query: 224 KSLCSSSIWYGTDQPHFFGSPS----SYLN 147
KS S +IWYG D+P F G S SYLN
Sbjct: 44 KSAGSDTIWYGADRPKFLGPFSGETPSYLN 73


>sp|P44647|PRIA_HAEIN Primosomal protein N' OS=Haemophilus
influenzae GN=priA PE=3 SV=1
Length = 730

Score = 30.8 bits (68), Expect = 5.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1

Query: 357 KIGEHHWRALLQRPSRCNIQRTIAE 283
K G++ W+ LLQ PSR +Q+ + E
Sbjct: 682 KAGQYRWQLLLQHPSRMTLQKALRE 706


>sp|Q62232|SIX2_MOUSE Homeobox protein SIX2 OS=Mus musculus GN=Six2
PE=1 SV=2
Length = 296

Score = 30.4 bits (67), Expect = 7.6
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -3

Query: 607 TRAGHHSPLCSALKALFHRVL-LLPLSITGSGHEPHASNSPSLVSSAQPPGCCPRLKA-G 434
+ + H+PL S+L VL T SG H+S+SP+L+ S PP P L + G
Sbjct: 193 SNSSSHNPLASSLNGSGKSVLGSSEDEKTPSGTPDHSSSSPALLLSPPPPPGLPSLHSLG 252

Query: 433 YAP 425
+ P
Sbjct: 253 HPP 255


tr_hit_id Q5CCK8
Definition tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiantum capillus-veneris
Align length 68
Score (bit) 40.4
E-value 0.084
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955093|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_C22, 5'
(618 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiant... 40 0.084
tr|Q6H000|Q6H000_FREDI Pseudouridylate synthase OS=Fremyella dip... 37 0.93
tr|B2ITM9|B2ITM9_NOSP7 tRNA pseudouridine synthase A OS=Nostoc p... 37 1.2
tr|A2ZCU1|A2ZCU1_ORYSI Putative uncharacterized protein OS=Oryza... 36 2.1
tr|A0ZG49|A0ZG49_NODSP Pseudouridylate synthase OS=Nodularia spu... 34 6.0
tr|Q7XX28|Q7XX28_ORYSJ OSJNBa0060B20.19 protein OS=Oryza sativa ... 34 6.1
tr|Q0JEQ9|Q0JEQ9_ORYSJ Os04g0219600 protein OS=Oryza sativa subs... 34 6.1
tr|A3AR73|A3AR73_ORYSJ Putative uncharacterized protein OS=Oryza... 34 6.1
tr|Q16LU4|Q16LU4_AEDAE Nop2p, putative OS=Aedes aegypti GN=AAEL0... 34 6.1
tr|Q8LKA5|Q8LKA5_ORYSJ NBS-LRR protein (Fragment) OS=Oryza sativ... 34 7.9

>tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiantum
capillus-veneris GN=AcCab1 PE=4 SV=1
Length = 215

Score = 40.4 bits (93), Expect = 0.084
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Frame = -2

Query: 317 LLAATFSGQ*LKP*---MRSPGRSKPCMLMMAPKKSLCSSSIWYGTDQ----PHFFGSPS 159
L ++ FSGQ LKP R G S+ + MMAPKKS S +I YG D+ F GSP
Sbjct: 15 LSSSVFSGQQLKPVNELSRKVGTSEARVQMMAPKKS-SSGNIRYGADRLLYLGPFSGSPP 73

Query: 158 SYLNS*IP 135
SYL P
Sbjct: 74 SYLTGEFP 81


>tr|Q6H000|Q6H000_FREDI Pseudouridylate synthase OS=Fremyella
diplosiphon PE=3 SV=1
Length = 268

Score = 37.0 bits (84), Expect = 0.93
Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 12/88 (13%)
Frame = +3

Query: 78 RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224
RASA N W+ F A RY V W L ++ AA K L
Sbjct: 85 RASAGVGNRWHARFSAAYRRYRYTIYTEDQPNLFVRPFSWHYYYAPLDESLIKAA-LKPL 143

Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305
LG HH A R S+RSHSW+++ +AEC
Sbjct: 144 LGKHHLAAFHRAGSKRSHSWVEVQAAEC 171


>tr|B2ITM9|B2ITM9_NOSP7 tRNA pseudouridine synthase A OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102)
GN=Npun_R4364 PE=4 SV=1
Length = 282

Score = 36.6 bits (83), Expect = 1.2
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Frame = +3

Query: 78 RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224
RASA N W+ F A RY V W L ++ AA K L
Sbjct: 99 RASASVDNRWHARFSAAYRRYRYTIYTEDRLNLFVRPFSWHYYYAPLDESLIQAA-LKPL 157

Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305
LG HH A R S+RSHSW+++ + EC
Sbjct: 158 LGKHHLAAFHRAGSKRSHSWVEVQAVEC 185


>tr|A2ZCU1|A2ZCU1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_35606 PE=4 SV=1
Length = 788

Score = 35.8 bits (81), Expect = 2.1
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
P ++ WS Y L + + D + AI+++ D+PGDL + F YC +
Sbjct: 387 PTEYAWSQAYDQLRNEMSKNDHIRAILNLSYHDMPGDLRNCFLYCSM 433


>tr|A0ZG49|A0ZG49_NODSP Pseudouridylate synthase OS=Nodularia
spumigena CCY 9414 GN=truA PE=3 SV=1
Length = 296

Score = 34.3 bits (77), Expect = 6.0
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Frame = +3

Query: 78 RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224
+ASA N W+ F A RY V W L + AA + L
Sbjct: 100 KASAAVDNRWHARFSAAYRRYRYTIYTEERPNLFVRPFSWHYYYAPLDECLIQAA-LEPL 158

Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305
+G HH A R S+RSHSW+++ +AEC
Sbjct: 159 MGKHHLAAFHRAGSKRSHSWVEVQAAEC 186


>tr|Q7XX28|Q7XX28_ORYSJ OSJNBa0060B20.19 protein OS=Oryza sativa
subsp. japonica GN=OSJNBa0060B20.19 PE=4 SV=1
Length = 962

Score = 34.3 bits (77), Expect = 6.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
P + W Y L L + D + AI+++ +DLPGDL + F YC +
Sbjct: 387 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 433


>tr|Q0JEQ9|Q0JEQ9_ORYSJ Os04g0219600 protein OS=Oryza sativa subsp.
japonica GN=Os04g0219600 PE=2 SV=1
Length = 701

Score = 34.3 bits (77), Expect = 6.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
P + W Y L L + D + AI+++ +DLPGDL + F YC +
Sbjct: 387 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 433


>tr|A3AR73|A3AR73_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_013295 PE=4 SV=1
Length = 853

Score = 34.3 bits (77), Expect = 6.1
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
P + W Y L L + D + AI+++ +DLPGDL + F YC +
Sbjct: 317 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 363


>tr|Q16LU4|Q16LU4_AEDAE Nop2p, putative OS=Aedes aegypti
GN=AAEL012520 PE=4 SV=1
Length = 491

Score = 34.3 bits (77), Expect = 6.1
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Frame = +1

Query: 196 YQMLLEQRDFLGAIISMHGFDLPGDLIHGFSYCPLNVAARRPLQ*CSPVVLSYLPLDNIA 375
Y+ DF +I H F++P +L FSY NV+ RP + CS VLS+ +D +
Sbjct: 209 YKYYNNSADFPVSIEMEHSFEIPENL-EIFSYERGNVSDFRPPRSCSTGVLSHFLMDGAS 267

Query: 376 -----SVEISTGQRLMRRQASKG 429
++++ G R++ AS G
Sbjct: 268 VLPALALDVQPGDRVLDACASPG 290


>tr|Q8LKA5|Q8LKA5_ORYSJ NBS-LRR protein (Fragment) OS=Oryza sativa
subsp. japonica GN=rNBS17 PE=4 SV=1
Length = 296

Score = 33.9 bits (76), Expect = 7.9
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +1

Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300
P + W Y L L + D + A++++ +DLPGDL + F YC +
Sbjct: 183 PIQHAWKQTYNQLQSELAKSDHVQAVLNLSYYDLPGDLSNCFLYCSM 229