DK955093 |
Clone id |
TST39A01NGRL0022_C22 |
Library |
TST39 |
Length |
618 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_C22. 5' end sequence. |
Accession |
DK955093 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1681Contig1 |
Sequence |
GTCTTCTTTTCCTCTCCTCTCTCCCTTGCTCCCTCATCTCCCTAGCTATGTCTATACGAG AAGCTATCCGCTTCCGCCGCGCTTCCGCGCCAAAGCCCAACAATTGGTATCAGAGCTTTG GGGCAAGGTCTTGTAGGTATTCATGAGTTGAGGTATGAAGATGGGCTGCCAAAGAAGTGG GGTTGGTCTGTGCCATACCAGATGCTGCTAGAGCAAAGGGACTTCTTGGGAGCCATCATC AGCATGCACGGCTTCGACCTTCCAGGAGATCTCATTCATGGCTTCAGCTATTGTCCGCTG AATGTTGCAGCGAGAAGGCCGTTGCAATAGTGCTCGCCAGTGGTGCTCTCCTATCTTCCC CTCGATAATATAGCCTCAGTCGAGATCTCGACAGGCCAAAGGCTCATGAGAAGACAAGCC TCAAAGGGGCATAGCCAGCCTTGAGACGAGGGCAACAGCCCGGGGGCTGAGCAGACGAAA CTAGAGATGGCGAATTGGAGGCATGAGGCTCATGCCCGGATCCAGTGATAGAGAGGGGCA GCAGCAGCACGCGATGAAAGAGGGCTTTGAGAGCACTGCAGAGGGGCGAGTGGTGGCCAG CACGGGTCACCATGCTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P15195 |
Definition |
sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum |
Align length |
67 |
Score (bit) |
52.0 |
E-value |
2.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5CCK8 |
Definition |
tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiantum capillus-veneris |
Align length |
68 |
Score (bit) |
40.4 |
E-value |
0.084 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955093|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_C22, 5' (618 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiant... 40 0.084 tr|Q6H000|Q6H000_FREDI Pseudouridylate synthase OS=Fremyella dip... 37 0.93 tr|B2ITM9|B2ITM9_NOSP7 tRNA pseudouridine synthase A OS=Nostoc p... 37 1.2 tr|A2ZCU1|A2ZCU1_ORYSI Putative uncharacterized protein OS=Oryza... 36 2.1 tr|A0ZG49|A0ZG49_NODSP Pseudouridylate synthase OS=Nodularia spu... 34 6.0 tr|Q7XX28|Q7XX28_ORYSJ OSJNBa0060B20.19 protein OS=Oryza sativa ... 34 6.1 tr|Q0JEQ9|Q0JEQ9_ORYSJ Os04g0219600 protein OS=Oryza sativa subs... 34 6.1 tr|A3AR73|A3AR73_ORYSJ Putative uncharacterized protein OS=Oryza... 34 6.1 tr|Q16LU4|Q16LU4_AEDAE Nop2p, putative OS=Aedes aegypti GN=AAEL0... 34 6.1 tr|Q8LKA5|Q8LKA5_ORYSJ NBS-LRR protein (Fragment) OS=Oryza sativ... 34 7.9
>tr|Q5CCK8|Q5CCK8_ADICA Chlorophyll a/b-binding protein OS=Adiantum capillus-veneris GN=AcCab1 PE=4 SV=1 Length = 215
Score = 40.4 bits (93), Expect = 0.084 Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 7/68 (10%) Frame = -2
Query: 317 LLAATFSGQ*LKP*---MRSPGRSKPCMLMMAPKKSLCSSSIWYGTDQ----PHFFGSPS 159 L ++ FSGQ LKP R G S+ + MMAPKKS S +I YG D+ F GSP Sbjct: 15 LSSSVFSGQQLKPVNELSRKVGTSEARVQMMAPKKS-SSGNIRYGADRLLYLGPFSGSPP 73
Query: 158 SYLNS*IP 135 SYL P Sbjct: 74 SYLTGEFP 81
>tr|Q6H000|Q6H000_FREDI Pseudouridylate synthase OS=Fremyella diplosiphon PE=3 SV=1 Length = 268
Score = 37.0 bits (84), Expect = 0.93 Identities = 32/88 (36%), Positives = 40/88 (45%), Gaps = 12/88 (13%) Frame = +3
Query: 78 RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224 RASA N W+ F A RY V W L ++ AA K L Sbjct: 85 RASAGVGNRWHARFSAAYRRYRYTIYTEDQPNLFVRPFSWHYYYAPLDESLIKAA-LKPL 143
Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305 LG HH A R S+RSHSW+++ +AEC Sbjct: 144 LGKHHLAAFHRAGSKRSHSWVEVQAAEC 171
>tr|B2ITM9|B2ITM9_NOSP7 tRNA pseudouridine synthase A OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=Npun_R4364 PE=4 SV=1 Length = 282
Score = 36.6 bits (83), Expect = 1.2 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 12/88 (13%) Frame = +3
Query: 78 RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224 RASA N W+ F A RY V W L ++ AA K L Sbjct: 99 RASASVDNRWHARFSAAYRRYRYTIYTEDRLNLFVRPFSWHYYYAPLDESLIQAA-LKPL 157
Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305 LG HH A R S+RSHSW+++ + EC Sbjct: 158 LGKHHLAAFHRAGSKRSHSWVEVQAVEC 185
>tr|A2ZCU1|A2ZCU1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35606 PE=4 SV=1 Length = 788
Score = 35.8 bits (81), Expect = 2.1 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%) Frame = +1
Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300 P ++ WS Y L + + D + AI+++ D+PGDL + F YC + Sbjct: 387 PTEYAWSQAYDQLRNEMSKNDHIRAILNLSYHDMPGDLRNCFLYCSM 433
>tr|A0ZG49|A0ZG49_NODSP Pseudouridylate synthase OS=Nodularia spumigena CCY 9414 GN=truA PE=3 SV=1 Length = 296
Score = 34.3 bits (77), Expect = 6.0 Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 12/88 (13%) Frame = +3
Query: 78 RASAPKPNNWYQSFGARSCRYS*-----------VEV*RWAAKEVGLVCAIPDAARAKGL 224 +ASA N W+ F A RY V W L + AA + L Sbjct: 100 KASAAVDNRWHARFSAAYRRYRYTIYTEERPNLFVRPFSWHYYYAPLDECLIQAA-LEPL 158
Query: 225 LGSHHQHARLRP-SRRSHSWLQLLSAEC 305 +G HH A R S+RSHSW+++ +AEC Sbjct: 159 MGKHHLAAFHRAGSKRSHSWVEVQAAEC 186
>tr|Q7XX28|Q7XX28_ORYSJ OSJNBa0060B20.19 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0060B20.19 PE=4 SV=1 Length = 962
Score = 34.3 bits (77), Expect = 6.1 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +1
Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300 P + W Y L L + D + AI+++ +DLPGDL + F YC + Sbjct: 387 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 433
>tr|Q0JEQ9|Q0JEQ9_ORYSJ Os04g0219600 protein OS=Oryza sativa subsp. japonica GN=Os04g0219600 PE=2 SV=1 Length = 701
Score = 34.3 bits (77), Expect = 6.1 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +1
Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300 P + W Y L L + D + AI+++ +DLPGDL + F YC + Sbjct: 387 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 433
>tr|A3AR73|A3AR73_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_013295 PE=4 SV=1 Length = 853
Score = 34.3 bits (77), Expect = 6.1 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +1
Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300 P + W Y L L + D + AI+++ +DLPGDL + F YC + Sbjct: 317 PIQHAWKQTYNQLQSELAKSDHVQAILNLSYYDLPGDLSNCFLYCSM 363
>tr|Q16LU4|Q16LU4_AEDAE Nop2p, putative OS=Aedes aegypti GN=AAEL012520 PE=4 SV=1 Length = 491
Score = 34.3 bits (77), Expect = 6.1 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%) Frame = +1
Query: 196 YQMLLEQRDFLGAIISMHGFDLPGDLIHGFSYCPLNVAARRPLQ*CSPVVLSYLPLDNIA 375 Y+ DF +I H F++P +L FSY NV+ RP + CS VLS+ +D + Sbjct: 209 YKYYNNSADFPVSIEMEHSFEIPENL-EIFSYERGNVSDFRPPRSCSTGVLSHFLMDGAS 267
Query: 376 -----SVEISTGQRLMRRQASKG 429 ++++ G R++ AS G Sbjct: 268 VLPALALDVQPGDRVLDACASPG 290
>tr|Q8LKA5|Q8LKA5_ORYSJ NBS-LRR protein (Fragment) OS=Oryza sativa subsp. japonica GN=rNBS17 PE=4 SV=1 Length = 296
Score = 33.9 bits (76), Expect = 7.9 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +1
Query: 169 PKKWGWSVPYQML---LEQRDFLGAIISMHGFDLPGDLIHGFSYCPL 300 P + W Y L L + D + A++++ +DLPGDL + F YC + Sbjct: 183 PIQHAWKQTYNQLQSELAKSDHVQAVLNLSYYDLPGDLSNCFLYCSM 229
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