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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955114
Clone id TST39A01NGRL0022_D19
Library
Length 620
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_D19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTTGTCTTCCTCCTTACCCACCCAGCACCTTTCAACTGTGGGGTGGGGGCAAGGAAGAC
CTCTTTCTCTTCACTTCATCCTCCCGCAAAGCGCACGGCCACAGATAGAAGTTGCCACTT
TCTTAGCAATCGGCTATGGTGTTCTCTTAGCAGAAAAGGTGGCTTCTTCCCCCCAGTTGC
CTTTTTCCTACACATCGCTGCTTCTGCTCAAATCTGCTTCACCCACTTTCAAAAGACTGC
TTATGCTGAAGCGCACAACAACATGAGAGGATGCCTCAGCTATGTAAGGAGAAGAAGTAG
GAAGGATATAGTGGGCAACAGTCCGAGTTCTAAAAGAGACAGTGACGATGATGACATGAA
GAATGAAGTCTGGTTTGATTCGAGGCTAATATTCGAATCTGATTCAGATGATGATTTCAA
GTCGGTGAATGGCGATTCATTGCCTTCAAGCTTTGGCTACTCTTACTCGAGCCAAGGAGC
ACCACGGCCAACCTTTTCATCTTTGAAAGAAAGGATGGAAGAACTGGTTCGAGAAAACGG
TGTACATGAAGCCCACTTTGTCCTACCTCAAAGTGGGCAAACCAGCCCAGAAGAGAAGAA
AACACTGGGACAATTGTTCA
■■Homology search results ■■ -
sp_hit_id Q9LK32
Definition sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabidopsis thaliana
Align length 90
Score (bit) 46.6
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955114|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_D19, 5'
         (620 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210 OS=Arabi...    47   1e-04
sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''...    32   3.5  

>sp|Q9LK32|Y3721_ARATH Uncharacterized protein At3g27210
           OS=Arabidopsis thaliana GN=Y-2 PE=1 SV=1
          Length = 234

 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQGAPRPTFSSLKERMEELVREN 538
           K+E +FDS+   +SDSDDDF SVNGD               P+ +FS    R   L+   
Sbjct: 81  KDETFFDSQPWLQSDSDDDFHSVNGDFTPSLG-------NTPKSSFSDRPPRFHNLI--- 130

Query: 539 GVHEAHFVLPQSGQTSP---EEKKTLGQLF 619
                H   P  G +SP     +K LG+LF
Sbjct: 131 ----FHEKKPSRGSSSPAPLPRRKKLGELF 156


>sp|Q85FM9|RPOC2_ADICA DNA-directed RNA polymerase subunit beta''
           OS=Adiantum capillus-veneris GN=rpoC2 PE=2 SV=2
          Length = 1420

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = +2

Query: 89  KRTATDRSCHFLSNRLWCSLSRKGGFF--PPVAFFLHIAASAQICFTHFQKTAYAEAHNN 262
           KR   D      S+R WC + RKG FF  P   +  H  +S+ +   +      A+  NN
Sbjct: 632 KRLQLDGGTGNKSSRPWCRVVRKGNFFLIPEEVYLTHEPSSSILVTNNAIVKKGAQITNN 691

Query: 263 M---RGCLSYVRRRSR 301
           +    G L  +R+RSR
Sbjct: 692 IITKSGGLIRMRKRSR 707
tr_hit_id B8BCE0
Definition tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica
Align length 26
Score (bit) 42.7
E-value 0.017
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955114|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_D19, 5'
         (620 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.017
tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subs...    40   0.14 
tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.14 
tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.14 
tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.19 
tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized pr...    39   0.32 
tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medic...    39   0.32 
tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea m...    38   0.55 
tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequen...    37   0.72 
tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis...    37   0.72 
tr|A2WYF6|A2WYF6_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.72 
tr|B6TYG3|B6TYG3_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.94 
tr|A7PN08|A7PN08_VITVI Chromosome chr14 scaffold_21, whole genom...    35   2.7  
tr|Q1PDP3|Q1PDP3_ARATH Putative uncharacterized protein OS=Arabi...    35   3.6  
tr|A0MFL1|A0MFL1_ARATH Putative uncharacterized protein (Fragmen...    35   3.6  
tr|Q9SY85|Q9SY85_ARATH F14N23.31 OS=Arabidopsis thaliana PE=4 SV=1     35   4.7  
tr|Q8LPT2|Q8LPT2_ARATH At1g10410/F14N23_31 OS=Arabidopsis thalia...    35   4.7  
tr|Q7XNQ0|Q7XNQ0_ORYSJ OSJNBb0089B03.11 protein (Putative unchar...    35   4.7  
tr|Q0JDS7|Q0JDS7_ORYSJ Os04g0380200 protein OS=Oryza sativa subs...    35   4.7  
tr|A2XSL5|A2XSL5_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.7  
tr|A2FXJ6|A2FXJ6_TRIVA Putative uncharacterized protein OS=Trich...    35   4.7  
tr|Q9A2D3|Q9A2D3_CAUCR Glycosyl transferase family protein OS=Ca...    34   6.1  
tr|B8H6F1|B8H6F1_CAUCR Glycosyltransferase OS=Caulobacter cresce...    34   6.1  

>tr|B8BCE0|B8BCE0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_29876 PE=4 SV=1
          Length = 542

 Score = 42.7 bits (99), Expect = 0.017
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGD 436
           K + WFDS  I E DSDD+FKSVNGD
Sbjct: 94  KEDAWFDSVSILEDDSDDEFKSVNGD 119


>tr|Q2QN63|Q2QN63_ORYSJ Os12g0577600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0577600 PE=4 SV=1
          Length = 565

 Score = 39.7 bits (91), Expect = 0.14
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGD 436
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B8BMP2|B8BMP2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_38863 PE=4 SV=1
          Length = 566

 Score = 39.7 bits (91), Expect = 0.14
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGD 436
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|A3CIS4|A3CIS4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035196 PE=4 SV=1
          Length = 543

 Score = 39.7 bits (91), Expect = 0.14
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGD 436
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 84  QEEAWFDSLSILGSDSDEDFSSVNGD 109


>tr|B6UBW0|B6UBW0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 559

 Score = 39.3 bits (90), Expect = 0.19
 Identities = 17/26 (65%), Positives = 19/26 (73%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGD 436
           + E WFDS  I  SDSD+DF SVNGD
Sbjct: 90  QEEAWFDSVSILGSDSDEDFSSVNGD 115


>tr|Q9SLT5|Q9SLT5_ARATH CW14 protein (Putative uncharacterized
           protein At1g59650) (T30E16.22) OS=Arabidopsis thaliana
           GN=CW14 PE=1 SV=1
          Length = 492

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 16/25 (64%), Positives = 18/25 (72%)
 Frame = +2

Query: 362 NEVWFDSRLIFESDSDDDFKSVNGD 436
           +E WFDS L FE+D DDDF SV  D
Sbjct: 57  DEAWFDSNLAFETDCDDDFHSVQED 81


>tr|B7FH33|B7FH33_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 190

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGDXXXXXXXXXXXXQ-GAPRPTFSSLKERMEELVRE 535
           K E +FDS+   +SD +DDF SVNGD              G P    +S + R       
Sbjct: 66  KEEAFFDSKAWIDSDCEDDFYSVNGDFTPSRGNTPIHHAFGTPGVNKASSRNRTS----- 120

Query: 536 NGVHEAHFVLPQSGQTSPEEKKTLGQLF 619
                     P   ++SP++KK L +LF
Sbjct: 121 ----------PSPSESSPDKKKKLLELF 138


>tr|B6T898|B6T898_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 228

 Score = 37.7 bits (86), Expect = 0.55
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 245 AEAHNNMRGCLS----YVRRRSRKDIVGNXXXXXXXXXXXXMKNEVWFDSRLIFESDSDD 412
           AEA N   GC      +   +S+ D                 K+EV+F+SR   +SD +D
Sbjct: 25  AEAANEKGGCGGGDDDFADFKSKVDAEQQRAELNPKSPDSGSKDEVFFESRAWLDSDCED 84

Query: 413 DFKSVNGD 436
           DF SVNGD
Sbjct: 85  DFYSVNGD 92


>tr|Q5JJJ8|Q5JJJ8_ORYSJ cDNA clone:J023026C15, full insert sequence
           OS=Oryza sativa subsp. japonica GN=B1793G04.5 PE=2 SV=1
          Length = 231

 Score = 37.4 bits (85), Expect = 0.72
 Identities = 16/26 (61%), Positives = 21/26 (80%)
 Frame = +2

Query: 359 KNEVWFDSRLIFESDSDDDFKSVNGD 436
           K+E++FDSR   +SD +DDF SVNGD
Sbjct: 66  KDEMFFDSRAWLDSDCEDDFYSVNGD 91


>tr|A5BSP5|A5BSP5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001040 PE=4 SV=1
          Length = 535

 Score = 37.4 bits (85), Expect = 0.72
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 365 EVWFDSRLIFESDSDDDFKSVNGD 436
           EVWFD  ++FESD DDDF S+  D
Sbjct: 64  EVWFDPVMVFESDLDDDFYSIQED 87