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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955127
Clone id TST39A01NGRL0022_E08
Library
Length 188
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_E08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GCCAAAGGAATCCAAGGAGCTTGAGGATGAGGAAGGGGCTGCACCACAATTTGCACCTAC
GGACTACAGTCGACCACCCACGATTGCCGCCGTCACAGCAGCTCCTGGCCTCTAGGCGTG
ACGGAGGCGATGTCGCCAACAGGCAGCCAGGGTTGCCGGCCGGAGCGGCTGGTGCTATGC
TCGTGCCT
■■Homology search results ■■ -
sp_hit_id Q9BV68
Definition sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens
Align length 26
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955127|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_E08, 5'
         (188 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN...    31   2.2  
sp|Q1I4R8|Y4706_PSEE4 UPF0191 membrane protein PSEEN4706 OS=Pseu...    29   6.5  
sp|Q8NC56|LEMD2_HUMAN LEM domain-containing protein 2 OS=Homo sa...    29   6.5  
sp|P58459|ATS10_MOUSE A disintegrin and metalloproteinase with t...    29   6.5  

>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens
           GN=RNF126 PE=1 SV=1
          Length = 326

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 14/26 (53%), Positives = 19/26 (73%)
 Frame = +2

Query: 2   PKESKELEDEEGAAPQFAPTDYSRPP 79
           P+E++  E+  G+AP  APTD SRPP
Sbjct: 41  PEETRSTEN--GSAPSTAPTDQSRPP 64


>sp|Q1I4R8|Y4706_PSEE4 UPF0191 membrane protein PSEEN4706
           OS=Pseudomonas entomophila (strain L48) GN=PSEEN4706
           PE=3 SV=1
          Length = 203

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 88  GNRGWSTVVRRCKLWCSPFLILKLLGFL 5
           G  GW  V R+  LWC  +++L L+ +L
Sbjct: 64  GWSGWIVVRRQLGLWCFAYIVLHLVSYL 91


>sp|Q8NC56|LEMD2_HUMAN LEM domain-containing protein 2 OS=Homo
           sapiens GN=LEMD2 PE=1 SV=1
          Length = 503

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
 Frame = -2

Query: 175 APAAPAGNPGCLLATSPPSRLEA-RSCCDGGNRGWSTVVRRCK-------LWCSPFLILK 20
           A  APA  P  LL   P   L A R+   G  R    V RR +       LW S  L+L 
Sbjct: 165 ASPAPARLPSSLLGPDPRPGLRATRAGPAGAARARPEVGRRLERWLSRLLLWASLGLLLV 224

Query: 19  LLGFLW 2
            LG LW
Sbjct: 225 FLGILW 230


>sp|P58459|ATS10_MOUSE A disintegrin and metalloproteinase with
            thrombospondin motifs 10 OS=Mus musculus GN=Adamts10 PE=2
            SV=3
          Length = 1104

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 40   CTTICTYGLQSTTHDCRRHSSSWPLGVTEAMSPTGSQGC 156
            C+T C  G Q  T  C  H+       TEA+ P+  Q C
Sbjct: 1015 CSTQCGLGQQQRTVRCTSHTGQPSRECTEALRPSTMQQC 1053
tr_hit_id A9T6E0
Definition tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 25
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955127|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_E08, 5'
         (188 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   4.2  
tr|B7ZYY1|B7ZYY1_MAIZE Putative uncharacterized protein OS=Zea m...    33   9.4  

>tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46426 PE=3 SV=1
          Length = 278

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 2   PKESKELEDEEGAAPQFAPTDYSRP 76
           P E K+ EDEEGAA +FA  +Y+ P
Sbjct: 196 PDEGKDREDEEGAAVEFAAVEYAAP 220


>tr|B7ZYY1|B7ZYY1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 246

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 181 SIAPAAPAGNPGCLLATSPPSRLEARSCCDGGNRG 77
           ++A ++P+G   C+L  + P+R  +  CC  G+ G
Sbjct: 175 AMATSSPSGESSCILTAASPARRSSSDCCCSGHSG 209