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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955137
Clone id TST39A01NGRL0022_E18
Library
Length 586
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_E18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CGCGAAAGATGGTGAGTAGACCATCAGTCGAAGACTGCTACTTGCAGTTGGAGAGCAGTA
CCTTCTCGCCATAGCCAGCCTCCCCCTTCTCATGTACAGAGCGAGAAGATGAATATCCTG
CGCCGCAGGAAGGGTCCACCTATTAAGCCCGCCATCACTCAAGAATCCAATTCCCGCTCC
TTGGAAGATGAAATAGACGTCTCTCCGCCTTCCCACATCGAAAAACCCAGAGAAAATAAG
CTCGCTCTGCAGAAACCCATAGATGGACCGCTTAATCAAGATGACAAGAAAAAGAAGACG
AAGAAAAAGACTCCTTCTGAACCTTCCTCGTCTCTGCCACATGACTCAGATCAAGAAGGT
GAGGTAGTGAACCCTACTGAACCACCATCTGGCTCTTCCTCTTCTGGAACAACTAAGCCA
GCTCCTGCTGCCCTGCCTTCTCCTAAAAAGGGCAAGAAGTTGAAACGGAGCGCTTGGGGA
TGCATAGACACATGCTGTTGGCTCATTGGCTATGTTTGTTGCTTGTGGTGGATGTTGCTG
GTGCTTTACAAAGCCTTTGCCATCGCTTTCTGAGGCCATAACGGGT
■■Homology search results ■■ -
sp_hit_id Q54QR5
Definition sp|Q54QR5|Y5621_DICDI Uncharacterized transmembrane protein DDB_G0283675 OS=Dictyostelium discoideum
Align length 61
Score (bit) 34.3
E-value 0.47
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955137|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_E18, 5'
         (586 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54QR5|Y5621_DICDI Uncharacterized transmembrane protein DDB_...    34   0.47 
sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica GN=SWR...    33   0.81 
sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor ...    33   1.0  
sp|P40040|THO1_YEAST Protein THO1 OS=Saccharomyces cerevisiae GN...    32   3.1  
sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gel...    32   3.1  
sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein ...    31   5.2  
sp|P11799|MYLK_CHICK Myosin light chain kinase, smooth muscle OS...    31   5.2  
sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 OS=Mus musculus ...    30   6.8  
sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type recepto...    30   8.8  
sp|Q86X45|LRRC6_HUMAN Leucine-rich repeat-containing protein 6 O...    30   8.9  
sp|Q21624|CORO_CAEEL Coronin-like protein cor-1 OS=Caenorhabditi...    30   8.9  
sp|Q6IP76|AKT2B_XENLA RAC-beta serine/threonine-protein kinase B...    30   8.9  

>sp|Q54QR5|Y5621_DICDI Uncharacterized transmembrane protein
           DDB_G0283675 OS=Dictyostelium discoideum GN=DDB_G0283675
           PE=4 SV=1
          Length = 392

 Score = 34.3 bits (77), Expect = 0.47
 Identities = 22/61 (36%), Positives = 27/61 (44%)
 Frame = -3

Query: 575 PQKAMAKAL*STSNIHHKQQT*PMSQQHVSMHPQALRFNFLPFLGEGRAAGAGLVVPEEE 396
           P+K +         I  K QT P   QH    P   + +   F G+GR AGAG    EEE
Sbjct: 177 PKKTLPPTTQPPETISPKSQTTPAITQHQISTPSPSQQSHHFFYGDGRPAGAGTDDKEEE 236

Query: 395 E 393
           E
Sbjct: 237 E 237


>sp|Q6CA87|SWR1_YARLI Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1
           PE=3 SV=1
          Length = 1772

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 184 EDEIDVSPPSHIEKPRENKL-ALQKPIDGPLNQDDXXXXXXXXXPSEPSSSLPHDSDQEG 360
           EDE +    + IE+  E    AL+ PID P  +D+          SE  SS   +SD E 
Sbjct: 741 EDEDEEEDDAEIEEETETTTPALETPIDTPAEEDEFSSDTDITLDSEDESSSEQESDYEA 800

Query: 361 E 363
           E
Sbjct: 801 E 801


>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3
           OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1
          Length = 3313

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -3

Query: 584 PLWPQKAMAKAL*STSNIHHKQQT*PMSQQHVSMHPQALRFNFLPFLGEGRAAGAGLVVP 405
           P +P  A AK + ST+           S++  + HPQ  ++N+   + E  AAG  ++  
Sbjct: 287 PGFPTGAEAKRILSTNQAR--------SRRAANRHPQFPQYNYQTLVPENEAAGTAVLRV 338

Query: 404 EEEEPDGGSVG 372
             ++PD G  G
Sbjct: 339 VAQDPDPGEAG 349


>sp|P40040|THO1_YEAST Protein THO1 OS=Saccharomyces cerevisiae
           GN=THO1 PE=1 SV=1
          Length = 218

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 145 KPAITQESNSRSLEDEIDVSP-PSHIEKPRENKLALQKPIDGP 270
           +PA  +E  S+++ ++ +VS  P    +P+E    +QKP DGP
Sbjct: 59  EPAAIEEPASQNITEKKEVSSEPKETNEPKEENKDVQKPSDGP 101


>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria
           gelatinovora GN=ageIM PE=3 SV=1
          Length = 429

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +1

Query: 67  RHSQPPPSHVQSEKMNILRRRK------GPPIKPAITQESNSRSLEDEIDVSPPSHIEKP 228
           R   P PSHV  ++  ++   +      GP I+PA+T       L DE+ V  P   +KP
Sbjct: 174 RIDPPQPSHVNGKRSGVVLNDQPSLFFDGPSIQPALTVRDAISDLPDEVLV--PRDTQKP 231

Query: 229 RE 234
            E
Sbjct: 232 ME 233


>sp|Q52KI8|SRRM1_MOUSE Serine/arginine repetitive matrix protein 1
           OS=Mus musculus GN=Srrm1 PE=1 SV=1
          Length = 946

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +1

Query: 52  RAVPSRHSQPPPSHVQSEKMNILRRRKGPPIKPAITQESNSRSLEDEIDVSPPSHIEKP 228
           R  P R   PPP H +S      RRR    +  + +  S+SRS        PP     P
Sbjct: 323 RRTPPRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSP--PKKPPKRTSSP 379


>sp|P11799|MYLK_CHICK Myosin light chain kinase, smooth muscle
            OS=Gallus gallus PE=1 SV=2
          Length = 1906

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +1

Query: 64   SRHSQPPPSHVQSEKMNILRRRKGPPIKPAIT-QESNSRSLEDEIDVSPPSHIEKPRENK 240
            S  +  P +   SE  N     + P  KP +  +E N R  E    V     I K  ENK
Sbjct: 1009 SASTPAPNARAGSEAQNATPNSEAPAPKPVVKKEEKNDRKCEHGCAVVDGGIIGKKAENK 1068

Query: 241  LALQKPIDGP 270
             A  KP   P
Sbjct: 1069 PAASKPTPPP 1078


>sp|P39447|ZO1_MOUSE Tight junction protein ZO-1 OS=Mus musculus
            GN=Tjp1 PE=1 SV=1
          Length = 1745

 Score = 30.4 bits (67), Expect = 6.8
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
 Frame = +1

Query: 76   QPPPSHVQSEKMNILRRRKGPPIKPAITQESNSRSLEDEIDVS------PPSHIEKPREN 237
            QPPP  +  E+ +   + +    +  + +   S SLE++ DV+      PP    KP   
Sbjct: 1243 QPPPPTLTEEEEDPAMKPQSVLTRVKMFENKRSASLENKKDVNDTASFKPPEVASKPPGA 1302

Query: 238  KLALQKPIDGPLNQDDXXXXXXXXXPSEPSSSLPHD 345
             LA  KP+      +          P +P    P D
Sbjct: 1303 SLAGPKPVPQSQFSEHDKTLYRLPEPQKPQVKPPED 1338


>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3
           OS=Homo sapiens GN=CELSR3 PE=1 SV=1
          Length = 3312

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 482 HPQALRFNFLPFLGEGRAAGAGLVVPEEEEPDGGSVG 372
           HPQ  ++N+   + E  AAG  ++    ++PD G  G
Sbjct: 322 HPQFPQYNYQTLVPENEAAGTAVLRVVAQDPDAGEAG 358


>sp|Q86X45|LRRC6_HUMAN Leucine-rich repeat-containing protein 6
           OS=Homo sapiens GN=LRRC6 PE=2 SV=3
          Length = 466

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +1

Query: 61  PSRHSQPPPSHVQSEKMNILRRRKGPPIKPAITQESNSRSLEDEIDVSP 207
           PS+HS P  +++  EK +  RRR  P I P+        + ED  +V P
Sbjct: 420 PSKHSFPDVTNIVQEKKHTPRRRPEPKIIPS----EEDPTFEDNPEVPP 464
tr_hit_id Q67U60
Definition tr|Q67U60|Q67U60_ORYSJ Os09g0444200 protein OS=Oryza sativa subsp. japonica
Align length 32
Score (bit) 55.5
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955137|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_E18, 5'
         (586 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q67U60|Q67U60_ORYSJ Os09g0444200 protein OS=Oryza sativa subs...    55   2e-06
tr|B8BCG6|B8BCG6_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|B4FW48|B4FW48_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|B4F8Z8|B4F8Z8_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|A3BZB6|A3BZB6_ORYSJ Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|Q9FNA9|Q9FNA9_ARATH Similarity to unknown protein (AT5g13640/...    54   6e-06
tr|Q6XSH3|Q6XSH3_MEDTR Lecithine cholesterol acyltransferase-lik...    52   2e-05
tr|A5AJT2|A5AJT2_VITVI Putative uncharacterized protein (Chromos...    52   2e-05
tr|A5BP62|A5BP62_VITVI Putative uncharacterized protein (Chromos...    52   2e-05
tr|Q9FYC7|Q9FYC7_ARATH Putative uncharacterized protein F28D10_2...    51   6e-05
tr|B8LQP7|B8LQP7_PICSI Putative uncharacterized protein OS=Picea...    49   2e-04
tr|A7PQK9|A7PQK9_VITVI Chromosome chr6 scaffold_25, whole genome...    47   8e-04
tr|A0A957|A0A957_IPOTF Putative uncharacterized protein OS=Ipomo...    42   0.020
tr|Q6JJ42|Q6JJ42_IPOTF Putative phosphatidylcholine-sterol acylt...    42   0.033
tr|B3P1W7|B3P1W7_DROER GG17413 OS=Drosophila erecta GN=GG17413 P...    39   0.17 
tr|Q9VHK3|Q9VHK3_DROME Polychaetoid, isoform A OS=Drosophila mel...    39   0.28 
tr|B4QXW5|B4QXW5_DROSI GD20836 OS=Drosophila simulans GN=GD20836...    39   0.28 
tr|B4PTX5|B4PTX5_DROYA GE24813 OS=Drosophila yakuba GN=GE24813 P...    39   0.28 
tr|B4HKZ2|B4HKZ2_DROSE GM26299 OS=Drosophila sechellia GN=GM2629...    39   0.28 
tr|B4QR76|B4QR76_DROSI GD12738 OS=Drosophila simulans GN=GD12738...    35   2.4  
tr|B3QFZ4|B3QFZ4_RHOPT Integrase family protein OS=Rhodopseudomo...    35   4.0  
tr|A7TE59|A7TE59_VANPO Putative uncharacterized protein OS=Vande...    35   4.1  
tr|Q69RG1|Q69RG1_ORYSJ Putative uncharacterized protein P0493C06...    34   5.3  
tr|Q4E1B0|Q4E1B0_TRYCR Mucin-associated surface protein (MASP), ...    34   5.3  
tr|B0YC20|B0YC20_ASPFC Putative uncharacterized protein OS=Asper...    34   5.3  
tr|B7KD63|B7KD63_9CHRO Putative uncharacterized protein OS=Cyano...    34   6.9  
tr|B4FWW0|B4FWW0_MAIZE Putative uncharacterized protein OS=Zea m...    34   7.0  
tr|Q4U8D5|Q4U8D5_THEAN Theileria-specific sub-telomeric protein,...    34   7.0  
tr|B0X315|B0X315_CULQU Syntaxin 4 OS=Culex quinquefasciatus GN=C...    34   7.0  
tr|A7ASX3|A7ASX3_BABBO Spherical Body Protein 2 (SBP2) OS=Babesi...    34   7.0  

>tr|Q67U60|Q67U60_ORYSJ Os09g0444200 protein OS=Oryza sativa subsp.
           japonica GN=OJ1123_B08.7-1 PE=2 SV=1
          Length = 691

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W C+D+CCWL+G VC  WW+LL LY A   +F
Sbjct: 64  WSCVDSCCWLVGCVCSAWWLLLFLYNAMPASF 95


>tr|B8BCG6|B8BCG6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31553 PE=4 SV=1
          Length = 710

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W C+D+CCWL+G VC  WW+LL LY A   +F
Sbjct: 64  WSCVDSCCWLVGCVCSAWWLLLFLYNAMPASF 95


>tr|B4FW48|B4FW48_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 678

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W C+D+CCWL+G VC  WW+LL LY A   +F
Sbjct: 50  WSCVDSCCWLVGCVCSAWWLLLFLYNAMPASF 81


>tr|B4F8Z8|B4F8Z8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 676

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W C+D+CCWL+G VC  WW+LL LY A   +F
Sbjct: 48  WSCVDSCCWLVGCVCSAWWLLLFLYNAMPASF 79


>tr|A3BZB6|A3BZB6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_028388 PE=4 SV=1
          Length = 733

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W C+D+CCWL+G VC  WW+LL LY A   +F
Sbjct: 64  WSCVDSCCWLVGCVCSAWWLLLFLYNAMPASF 95


>tr|Q9FNA9|Q9FNA9_ARATH Similarity to unknown protein
           (AT5g13640/MSH12_10) OS=Arabidopsis thaliana
           GN=At5g13640 PE=2 SV=1
          Length = 671

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 19/32 (59%), Positives = 21/32 (65%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W CID+CCW IG VC  WW LL LY A   +F
Sbjct: 48  WSCIDSCCWFIGCVCVTWWFLLFLYNAMPASF 79


>tr|Q6XSH3|Q6XSH3_MEDTR Lecithine cholesterol acyltransferase-like
           protein OS=Medicago truncatula PE=2 SV=1
          Length = 680

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W C+D+CCW +G +C LWW LL +Y     +F
Sbjct: 57  WSCVDSCCWFVGCICTLWWFLLFMYNVMPASF 88


>tr|A5AJT2|A5AJT2_VITVI Putative uncharacterized protein (Chromosome
           chr11 scaffold_13, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00016485001 PE=4 SV=1
          Length = 672

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKAFAIAF 570
           W CID CCW +G +C +WW LL L+ A   +F
Sbjct: 47  WSCIDNCCWFVGCICSIWWFLLFLFNAMPASF 78


>tr|A5BP62|A5BP62_VITVI Putative uncharacterized protein (Chromosome
           chr9 scaffold_7, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00034111001 PE=4 SV=1
          Length = 680

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +1

Query: 475 WGCIDTCCWLIGYVCCLWWMLLVLYKA 555
           W C+D+CCW IG +C +WW+LL LY A
Sbjct: 54  WSCLDSCCWFIGCICTVWWILLFLYNA 80


>tr|Q9FYC7|Q9FYC7_ARATH Putative uncharacterized protein F28D10_20
           OS=Arabidopsis thaliana GN=F28D10_20 PE=4 SV=1
          Length = 665

 Score = 50.8 bits (120), Expect = 6e-05
 Identities = 16/28 (57%), Positives = 22/28 (78%)
 Frame = +1

Query: 481 CIDTCCWLIGYVCCLWWMLLVLYKAFAI 564
           C+D+CCWLIGY+C  WW+LL LY +  +
Sbjct: 41  CVDSCCWLIGYLCTAWWLLLFLYHSVPV 68