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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955146
Clone id TST39A01NGRL0022_F03
Library
Length 617
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_F03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TGCAGATTCTAGGGTTTTCTTTCTGTTGTCGGTTCAATTTAAGGGGACTCACCGCCCAGA
TTTCTCGCCTCTTTGCGAGCGCCCATTTGATTGGGGGTCTGCTCTTCTGACCGTTTAGGG
TTTCGCTACTGCTGTTAGGGTTTCTCCACGTGCCATCGTGATTTAGTTCGAGCTACCGTA
ATTCGGTCTTGTAGATCACTACAGAATTTCCGTATCGACGCGAGGTTTTGGGACACAGCA
GATCTCTCTCGTTCTACTTCAGATCTGTGTCCAGGAGCTAAGCGAGCTCAGGATTGATGG
AGAATATTTATTCTTTCTGGAGTCTAAATGACAATAATCGGCGCTCTCCCACTGAGATGC
AAGAGGATCAAAGCTGGAAAGTAGCAGCTACCAAGCTTGCTTTTGCGGATCAGATGAGGC
TGAAGTTTGATAGGTCTAGATCTGATGCGAAGGTTGTGGCCCCTCATGAGAAGAACATTA
AACAAGCAAAGGGACGATCCAAGGGCAGAGCTGAAGACATGCTGAAGGGGGAAGGTTTCA
ACCAGAAGTTTTCGGATGGGGATTTGAGATATTGGAGATTTGGGTCAGAAGCTTGGAACA
GGTAACATGTCAACATC
■■Homology search results ■■ -
sp_hit_id Q9TW28
Definition sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium discoideum
Align length 100
Score (bit) 31.6
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955146|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F03, 5'
         (617 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium disco...    32   3.4  
sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2 OS=Sacchar...    31   5.8  
sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog OS...    30   7.6  

>sp|Q9TW28|MYOM_DICDI Myosin-M heavy chain OS=Dictyostelium discoideum
            GN=myoM PE=1 SV=1
          Length = 1737

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 19/100 (19%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
 Frame = +3

Query: 171  SYRNSVL*ITTEFPYRREVLGHSRSLSFYFRSVSRS*ASSGLMENIYSFWSLNDNNRRSP 350
            SYR   +    +F  R   + +S ++     +++ S     ++EN+ S +  N+NN+ + 
Sbjct: 795  SYRRDFI----QFYSRYNCILNSLNIKINLTNINHSNLCKEILENVNSQYKNNNNNKNNN 850

Query: 351  TEM-----QEDQSWKVAATKLAFADQMRLKFDRSRSDAKV 455
             ++         ++++  TK+  +D++ +  ++ R D+ V
Sbjct: 851  NQIVKITTNSKPTFQIGKTKIFISDELYIYLEKKRYDSLV 890


>sp|Q12153|SSF2_YEAST Ribosome biogenesis protein SSF2
           OS=Saccharomyces cerevisiae GN=SSF2 PE=1 SV=1
          Length = 453

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +3

Query: 354 EMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKNIKQAKG-----RSKGRAED 518
           E  +  S ++ A +   A +MRLK  R +   + +A  +K +K AK      R K RAE+
Sbjct: 355 EFVQKSSEEIKALEKRHAAKMRLKEQRRKEQEENIAK-KKAVKDAKKQRKLERRKARAEE 413

Query: 519 MLKGEGFNQKFSD 557
             +G+G +   SD
Sbjct: 414 QGEGQGKDGAMSD 426


>sp|Q54S59|WDR61_DICDI WD repeat-containing protein 61 homolog
           OS=Dictyostelium discoideum GN=wdr61 PE=4 SV=1
          Length = 299

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +3

Query: 210 PYRREVLGHSRSLSFYFRSVSRS*----ASSGLMENIYSFWSLNDNNRRSPTEMQEDQSW 377
           PY   +LGHS   SF F  V+ S     ASSG ++     W +      S      DQ+W
Sbjct: 216 PYIASLLGHS---SFIFSLVASSNGDLLASSGSIDRKVCIWDIKTRKLDSSFTAHADQTW 272

Query: 378 KVA 386
            +A
Sbjct: 273 DLA 275
tr_hit_id A9NP04
Definition tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 75
Score (bit) 41.2
E-value 0.049
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955146|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F03, 5'
         (617 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea...    41   0.049
tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citru...    40   0.11 
tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solan...    36   2.1  
tr|A5CF36|A5CF36_ORITB Putative GTP-binding protein OS=Orientia ...    35   3.5  
tr|B3CTG1|B3CTG1_ORITI GTP-binding protein, Era/Obg family OS=Or...    35   4.6  
tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC OS=Rho...    34   6.0  
tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC OS=Rho...    34   6.0  
tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC OS=Rho...    34   6.0  
tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides G...    34   6.0  
tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medic...    34   6.0  

>tr|A9NP04|A9NP04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 273

 Score = 41.2 bits (95), Expect = 0.049
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +3

Query: 297 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 476
           M + ++FW L ++ R   +E   DQ+W +AA+KLA  +Q R K DR  S     +  E  
Sbjct: 1   MVDSFAFWQLGESLRGLSSE---DQNWTLAASKLATFEQTRGKSDRINSLEPKTSYAE-- 55

Query: 477 IKQAKGRSKGRAEDM 521
           +K   G+S G+ E++
Sbjct: 56  VKHRGGKSNGKLEEV 70


>tr|O23769|O23769_CITPA Putative uncharacterized protein OS=Citrus
           paradisi PE=2 SV=1
          Length = 305

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
 Frame = +3

Query: 297 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPHEKN 476
           M+N++SFW L D   R  +   EDQSW  AA++L  A+Q R K +R             N
Sbjct: 1   MDNMHSFWQLGD-ELRGQSRTSEDQSWLRAASRL--AEQTRFKGERM-----------NN 46

Query: 477 IKQAKGRSKGRAEDML------KGEGFNQKFS 554
           +  +KG ++ R  D +        E FN  F+
Sbjct: 47  LDLSKGMTEIRPRDKIMYHEDNNFESFNFNFN 78


>tr|Q38HW1|Q38HW1_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 298

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +3

Query: 297 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLA----FADQMRLKFDRSRSDAKV 455
           MEN+ S+W   D   R  ++  ED  W  AA KL+    +  + R   D S+S A++
Sbjct: 1   MENMQSYWQFGD-ELRGQSKASEDHKWSTAALKLSEQMKYKGERRNNLDLSKSSAEI 56


>tr|A5CF36|A5CF36_ORITB Putative GTP-binding protein OS=Orientia
           tsutsugamushi (strain Boryong) GN=ychF PE=4 SV=1
          Length = 366

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = +3

Query: 288 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLA--FADQMRLKFDRSRSDAKVVA 461
           +GL + I S + L D N       +E ++W +    LA   A  +   F+R    A+V++
Sbjct: 267 TGLNKIIKSCYRLFDLNSYFTVGPKEARAWTIVKGTLAPQAAGIIHTDFERGFIKAEVIS 326

Query: 462 PHEKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYWRF 581
            +E  IK   G SK +    L+ EG +    DGD+ ++RF
Sbjct: 327 -YEDYIKY-NGESKAKEHGRLRIEGKDYVVQDGDIIHFRF 364


>tr|B3CTG1|B3CTG1_ORITI GTP-binding protein, Era/Obg family
           OS=Orientia tsutsugamushi (strain Ikeda) GN=OTT_1200
           PE=4 SV=1
          Length = 366

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = +3

Query: 288 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLA--FADQMRLKFDRSRSDAKVVA 461
           +GL + I S + L D N       +E ++W +    LA   A  +   F+R    A+V++
Sbjct: 267 TGLNKIIKSCYRLFDLNSYFTVGPKEARAWTIVKGTLAPQAAGIIHTDFERGFIKAEVIS 326

Query: 462 PHEKNIKQAKGRSKGRAEDMLKGEGFNQKFSDGDLRYWRF 581
            +E  IK   G SK +    L+ EG +    DGD+ ++RF
Sbjct: 327 -YEDYIKY-NGESKAKEHGRLRIEGKDYVVQDGDVIHFRF 364


>tr|Q3J402|Q3J402_RHOS4 Rod shape-determining protein MreC
           OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 /
           NCIB 8253 / DSM 158) GN=mreC PE=4 SV=1
          Length = 300

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 24/91 (26%), Positives = 43/91 (47%)
 Frame = +3

Query: 288 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 467
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 468 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDG 560
              +  A   S  R + +L   G      DG
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDG 154


>tr|A4WSY0|A4WSY0_RHOS5 Rod shape-determining protein MreC
           OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
           2.4.3) GN=Rsph17025_1601 PE=4 SV=1
          Length = 304

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 24/91 (26%), Positives = 43/91 (47%)
 Frame = +3

Query: 288 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 467
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 468 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDG 560
              +  A   S  R + +L   G      DG
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDG 154


>tr|A3PIE7|A3PIE7_RHOS1 Rod shape-determining protein MreC
           OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH
           2.4.9) GN=Rsph17029_1002 PE=4 SV=1
          Length = 300

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 24/91 (26%), Positives = 43/91 (47%)
 Frame = +3

Query: 288 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 467
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 468 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDG 560
              +  A   S  R + +L   G      DG
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDG 154


>tr|Q70AN6|Q70AN6_RHOSH MreC protein OS=Rhodobacter sphaeroides
           GN=mreC PE=4 SV=1
          Length = 300

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 24/91 (26%), Positives = 43/91 (47%)
 Frame = +3

Query: 288 SGLMENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDRSRSDAKVVAPH 467
           +G++EN  S+  + + N+    E+Q+ ++WK AA +L   +   L  ++ R D K+   H
Sbjct: 67  AGMVENFQSYTRIYEQNQELRRELQQMKAWKEAALQLEQKNARLLDLNQVRLDPKLT--H 124

Query: 468 EKNIKQAKGRSKGRAEDMLKGEGFNQKFSDG 560
              +  A   S  R + +L   G      DG
Sbjct: 125 VTGVVLADSGSPFR-QSVLLNVGARDGIRDG 154


>tr|B7FJI3|B7FJI3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 302

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +3

Query: 297 MENIYSFWSLNDNNRRSPTEMQEDQSWKVAATKLAFADQMRLKFDR 434
           M+N++SFW L D   R  ++  ED  W + A+KLA   + R K +R
Sbjct: 1   MDNMHSFWQLGD-ELRGHSKASEDHKWLMVASKLA---EQRSKAER 42