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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955149
Clone id TST39A01NGRL0022_F06
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_F06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CGAGCGCGCGCTCAAGCCTCACACCCCCCAATATATATAGGCAAAGTGGAGAACCAGGTT
TCGCAAAGCCGGGAAGAGGTGGCAGGCGTGATGCAGATGAGTGTGACCTCCTCTCCGCCT
TGCGACACCCAGCGGAGATCGTCTCTGGAGACAGAGCCACGCACGTTGTACGAGGATCAG
ATTGCAGAAGCTCAGGATGCTGCCATTGACATCATCCAAACTAAAGAACCAGAGGAAGCT
TTGGAAATCTTCACCACGCCAACTGTGGAAGAGCATCCTTGTGCCACAAAGAAGGAGAAC
GAAGAAGACATAAAAGCTGTGGTGGAGGGTTTAAGCGACAGGCAATTGTTACCTCCTACC
AAATTGCCTTCTGCTCCTTTCTGAGAAGGAACCTCCCACATTGTAATCAATATATCTGAA
ACACTTGCCGATTGCAATGTGTCGGTTGGCATACATGCTTATAAAGTGTACTCGTGTATA
AACCCAATCAATCCTATGGTTTTGTGCAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7XE48
Definition sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica
Align length 65
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955149|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F06, 5'
         (493 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1, chloroplastic...    32   1.2  
sp|Q2JLD5|COAX_SYNJB Type III pantothenate kinase OS=Synechococc...    32   2.1  
sp|P12111|CO6A3_HUMAN Collagen alpha-3(VI) chain OS=Homo sapiens...    31   2.7  
sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing prote...    31   3.5  
sp|Q5ZJV6|RCAN3_CHICK Calcipressin-3 OS=Gallus gallus GN=RCAN3 P...    30   4.6  
sp|P30662|KR2_SUHVN Serine/threonine-protein kinase 2 OS=Suid he...    30   5.9  
sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thal...    30   6.0  
sp|Q8NFW1|COMA1_HUMAN Collagen alpha-1(XXII) chain OS=Homo sapie...    30   7.8  
sp|P37091|SCNNG_RAT Amiloride-sensitive sodium channel subunit g...    30   7.9  
sp|Q9JKK0|RCAN3_MOUSE Calcipressin-3 OS=Mus musculus GN=Rcan3 PE...    30   7.9  

>sp|Q7XE48|SSY21_ORYSJ Soluble starch synthase 2-1,
           chloroplastic/amyloplastic OS=Oryza sativa subsp.
           japonica GN=SSII-1 PE=2 SV=2
          Length = 749

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = -1

Query: 208 QWQHPELLQSDPRTTCVALSPETISAGCRKAERRSHSSASRLPPL--PGFAKPGSPLCLY 35
           +W   E   S  RT+C A      S        RSH +     PL  PG  KPGS  CL 
Sbjct: 60  EWGRVEAQNSGARTSCRAALQWLSSTA------RSHVNVGYGSPLVFPGLTKPGSSRCLC 113

Query: 34  ILGGV 20
           ++G V
Sbjct: 114 VVGMV 118


>sp|Q2JLD5|COAX_SYNJB Type III pantothenate kinase OS=Synechococcus
           sp. GN=coaX PE=3 SV=1
          Length = 254

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 250 RFPKLPLVL*FG*CQWQHPELLQSDPRTTCVALSPETI---SAGCRKAERRSHSSAS 89
           RFP+ PL+L  G  +W HP L   DP    +   P  +    AGCR+  R +  S S
Sbjct: 199 RFPQGPLLLTGGDGKWLHPHLGPLDPE---LRWDPHLVLRGIAGCRQLHRTARHSPS 252


>sp|P12111|CO6A3_HUMAN Collagen alpha-3(VI) chain OS=Homo sapiens
            GN=COL6A3 PE=1 SV=4
          Length = 3177

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 9    RSSLTPPNIYRQSGEPGFAKPG--RGGRRDA-DECDLLSALR 125
            R +  PP I  Q G+PG+  P   +G R D+ D+C L+ +++
Sbjct: 2343 RGNSGPPGIVGQKGDPGYPGPAGPKGNRGDSIDQCALIQSIK 2384


>sp|O14325|YB7A_SCHPO Uncharacterized AAA domain-containing protein
           C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c
           PE=1 SV=1
          Length = 779

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -1

Query: 205 WQHPELLQSDPRTTCVALSPETISAGCRKAERRSHSSASRLPPLPGFAKPGSPLCLYILG 26
           W  P L + D      ++  E+I+   ++ +RRS ++ S+        +P S + L  +G
Sbjct: 118 WSSPNLKEIDGEDEKKSVGQESITGSAKRKDRRSKTNGSKRQKAEANREPPSDISLSDIG 177

Query: 25  GV 20
           G+
Sbjct: 178 GL 179


>sp|Q5ZJV6|RCAN3_CHICK Calcipressin-3 OS=Gallus gallus GN=RCAN3 PE=2
           SV=2
          Length = 249

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 20/66 (30%), Positives = 33/66 (50%)
 Frame = +1

Query: 253 TTPTVEEHPCATKKENEEDIKAVVEGLSDRQLLPPTKLPSAPF*EGTSHIVINISETLAD 432
           +TP+V  H C ++ E EE+IK      + +Q +  T+ P  P        ++N S+   D
Sbjct: 192 STPSVVVHVCESETEEEEEIK------NPKQKIMQTRRPEPP------ATILNESKAF-D 238

Query: 433 CNVSVG 450
           C + VG
Sbjct: 239 CTLEVG 244


>sp|P30662|KR2_SUHVN Serine/threonine-protein kinase 2 OS=Suid
           herpesvirus 1 (strain NIA-3) GN=UL13 PE=3 SV=1
          Length = 398

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 6   ARSSLTPPNIYRQSGEPGFAKPGRGGRRDADECDLLSALRHPAE 137
           +R++L  P I+R +  PG A    GG  D DE   L     P E
Sbjct: 11  SRAALARPPIHRGTSAPGGAIAAAGGDGDGDEASRLLGRAQPRE 54


>sp|Q9FQ02|XRN2_ARATH 5'-3' exoribonuclease 2 OS=Arabidopsis thaliana
            GN=XRN2 PE=2 SV=1
          Length = 1012

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +2

Query: 110  PLRLATPSGDRLWRQSHARCTRIRLQKLRM-LPLTSSKLKNQRKLWKSSPRQLWKSILVP 286
            P ++ +P   + W++     +R + +KL+  L +   K+K  +   +   R+  K  + P
Sbjct: 906  PKKMNSPQRQKAWKKDETPQSREKSKKLKSSLKVNPLKMKKTKSPQREFTREKKKENITP 965

Query: 287  QRRRTK 304
            QR+ TK
Sbjct: 966  QRKLTK 971


>sp|Q8NFW1|COMA1_HUMAN Collagen alpha-1(XXII) chain OS=Homo sapiens
            GN=COL22A1 PE=1 SV=1
          Length = 1626

 Score = 29.6 bits (65), Expect = 7.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 9    RSSLTPPNIYRQSGEPGFAKPGRGG 83
            R  + PP I  Q GEPG+AK G  G
Sbjct: 1555 RGEMGPPGIPGQPGEPGYAKDGLPG 1579


>sp|P37091|SCNNG_RAT Amiloride-sensitive sodium channel subunit
           gamma OS=Rattus norvegicus GN=Scnn1g PE=1 SV=2
          Length = 650

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -1

Query: 100 SSASRLPPLPGFAKPGSPLCLYILGGVRLERA 5
           +SA RLPP PG   PG+P   Y    +RL+RA
Sbjct: 607 TSAMRLPPAPGSTVPGTPPPRY--NTLRLDRA 636


>sp|Q9JKK0|RCAN3_MOUSE Calcipressin-3 OS=Mus musculus GN=Rcan3 PE=1
           SV=1
          Length = 239

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 253 TTPTVEEHPCATKKENEEDIKAVVEGLSDRQLLPPTKLPSAP 378
           +TP+V  H C ++ E EED K      + +Q +  T+ P AP
Sbjct: 192 STPSVVVHVCESETEEEEDTK------NPKQKITQTRRPEAP 227
tr_hit_id Q1G3K4
Definition tr|Q1G3K4|Q1G3K4_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana
Align length 68
Score (bit) 37.0
E-value 0.51
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955149|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F06, 5'
         (493 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1G3K4|Q1G3K4_ARATH Putative uncharacterized protein OS=Arabi...    37   0.51 
tr|A0MDS9|A0MDS9_ARATH Putative uncharacterized protein (Fragmen...    37   0.51 
tr|Q570U1|Q570U1_ARATH Putative uncharacterized protein OS=Arabi...    36   0.86 
tr|B8MNG2|B8MNG2_9EURO Glyoxalase family protein OS=Talaromyces ...    36   1.1  
tr|B6KFH3|B6KFH3_TOXGO PAK1 interacting protein, putative OS=Tox...    35   1.4  
tr|B4YYB2|B4YYB2_THEHA ST63-2 OS=Thellungiella halophila PE=4 SV=1     35   1.5  
tr|B1LX18|B1LX18_METRJ Outer membrane lipoprotein carrier protei...    35   2.4  
tr|B4PH49|B4PH49_DROYA GE21373 OS=Drosophila yakuba GN=GE21373 P...    35   2.5  
tr|B3CNZ9|B3CNZ9_WOLPP Putative uncharacterized protein OS=Wolba...    34   3.3  
tr|B6Y7G7|B6Y7G7_9RICK Putative uncharacterized protein OS=Wolba...    34   3.3  
tr|B3MM35|B3MM35_DROAN GF15063 OS=Drosophila ananassae GN=GF1506...    33   5.6  
tr|A4YVI8|A4YVI8_BRASO Putative uncharacterized protein OS=Brady...    33   7.1  
tr|Q4LBT7|Q4LBT7_SODGL RecE protein OS=Sodalis glossinidius GN=r...    33   7.3  
tr|Q2A0A5|Q2A0A5_9VIRU Putative exodeoxyribonuclease VIII OS=Sod...    33   7.3  
tr|A3E2I3|A3E2I3_9VIRU Gp20 OS=Sodalis phage phiSG1 PE=4 SV=1          33   7.3  
tr|Q9M300|Q9M300_ARATH Putative uncharacterized protein T21J18_1...    33   9.5  
tr|A6XN18|A6XN18_PRUPE Expressed protein OS=Prunus persica PE=4 ...    33   9.5  
tr|Q17KE8|Q17KE8_AEDAE Putative uncharacterized protein OS=Aedes...    33   9.5  
tr|B6KHU0|B6KHU0_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.5  

>tr|Q1G3K4|Q1G3K4_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 101

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +1

Query: 130 QRRSSLETEPRTLYXXXXXXXXXXXXXXXXTKEPEEALEIFTTPTVE--------EHPCA 285
           +RRSS+ETEP TL+                TK  EEA++IFT  T E           C 
Sbjct: 11  ERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRASEERGGRCI 70

Query: 286 TKKENEED 309
             K+ E+D
Sbjct: 71  NLKDEEDD 78


>tr|A0MDS9|A0MDS9_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 102

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
 Frame = +1

Query: 130 QRRSSLETEPRTLYXXXXXXXXXXXXXXXXTKEPEEALEIFTTPTVE--------EHPCA 285
           +RRSS+ETEP TL+                TK  EEA++IFT  T E           C 
Sbjct: 11  ERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKETHEGLRASEERGGRCI 70

Query: 286 TKKENEED 309
             K+ E+D
Sbjct: 71  NLKDEEDD 78


>tr|Q570U1|Q570U1_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 102

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
 Frame = +1

Query: 130 QRRSSLETEPRTLYXXXXXXXXXXXXXXXXTKEPEEALEIFTTPTVEE---------HPC 282
           +RRSS+ETEP TL+                TK  EEA++IFT     E           C
Sbjct: 11  ERRSSIETEPMTLHLDQLENAREEALYVMKTKTMEEAMDIFTKQETHEGLRASEERGGRC 70

Query: 283 ATKKENEED 309
              K+ E+D
Sbjct: 71  INLKDEEDD 79


>tr|B8MNG2|B8MNG2_9EURO Glyoxalase family protein OS=Talaromyces
           stipitatus ATCC 10500 GN=TSTA_102780 PE=4 SV=1
          Length = 674

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 25/101 (24%), Positives = 36/101 (35%)
 Frame = +3

Query: 66  KPGRGGRRDADECDLLSALRHPAEIVSGDRATHVVRGSDCRSSGCCH*HHPN*RTRGSFG 245
           KP     RD D  ++          V  D A  +         GC H HH +  T+ S G
Sbjct: 510 KPSSSSPRDLDAYEIPLPASAAPSTVFLDAAIDITPEDSISQVGCSHAHHSHNDTKSSSG 569

Query: 246 NLHHANCGRASLCHKEGERRRHKSCGGGFKRQAIVTSYQIA 368
             H +  G +S  H     +R  +  G    Q +  S  I+
Sbjct: 570 RSHRSRSGPSSQSHVSSASKRETAETGSKFDQPVKPSDSIS 610


>tr|B6KFH3|B6KFH3_TOXGO PAK1 interacting protein, putative
           OS=Toxoplasma gondii ME49 GN=TGME49_040850 PE=4 SV=1
          Length = 548

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 15/121 (12%)
 Frame = +3

Query: 12  SSLTPPNIYRQSGEPGFAKPGRGGRRDADEC---------------DLLSALRHPAEIVS 146
           SSLTP  I +++G+   + PG   +RD+ +                +  +A+  P E   
Sbjct: 402 SSLTPAAIAQEAGQEPLSFPGEKPKRDSSQTEAGEDADDEDKEEDEEAAAAVSRPTETGR 461

Query: 147 GDRATHVVRGSDCRSSGCCH*HHPN*RTRGSFGNLHHANCGRASLCHKEGERRRHKSCGG 326
           G R+  V+ G+               R + S GN       RASL  KEG +RR ++   
Sbjct: 462 GGRSAAVLSGN---------------RKKTSEGN-------RASLLEKEGRKRRRETTPR 499

Query: 327 G 329
           G
Sbjct: 500 G 500


>tr|B4YYB2|B4YYB2_THEHA ST63-2 OS=Thellungiella halophila PE=4 SV=1
          Length = 90

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 130 QRRSSLETEPRTLYXXXXXXXXXXXXXXXXTKEPEEALEIFTTPTVE 270
           Q++SS+ETEP TL+                TK  EEA++IFT  T E
Sbjct: 5   QKKSSIETEPMTLHFDQIKRAREEAMYVTKTKSFEEAMDIFTKETQE 51


>tr|B1LX18|B1LX18_METRJ Outer membrane lipoprotein carrier protein
           LolA OS=Methylobacterium radiotolerans (strain ATCC
           27329 / DSM 1819 / JCM 2831) GN=Mrad2831_3748 PE=3 SV=1
          Length = 302

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
 Frame = +3

Query: 42  QSGEPGFAKPGRGGRRDADECD------LLSALRHPAEIVSGDRA 158
           +  +PG AKPG+GG + +D+ D       ++A+  PA IV+GD A
Sbjct: 69  KEAKPGSAKPGKGGDKASDKVDHKAPEPKVAAVGAPAAIVTGDSA 113


>tr|B4PH49|B4PH49_DROYA GE21373 OS=Drosophila yakuba GN=GE21373 PE=4
           SV=1
          Length = 776

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
 Frame = -1

Query: 208 QWQHPELLQSDPRTTCVALSPETISAGCRKAERRSHSSASR---LPPL-PGFAKPGSP 47
           Q QH +  Q   +  C   +P T SA        S SSASR   LPPL P  + PGSP
Sbjct: 495 QQQHQQQQQQQLQQLCPPAAPSTPSASSSSISSSSASSASRHMFLPPLTPPSSDPGSP 552


>tr|B3CNZ9|B3CNZ9_WOLPP Putative uncharacterized protein
           OS=Wolbachia pipientis subsp. Culex pipiens (strain
           wPip) GN=WP1349 PE=4 SV=1
          Length = 1608

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +1

Query: 19  SHPPIYIGKVENQVSQSREEVAGVMQMSVTSSPPCDTQRRSSLETEPRTL 168
           S+P   + K+EN++ + +E++A + Q S TSS   D  R  +LET   TL
Sbjct: 509 SNPSSKVAKLENEMRKMKEDIAQLKQSSTTSSE--DKVRLGNLETTVETL 556


>tr|B6Y7G7|B6Y7G7_9RICK Putative uncharacterized protein
           OS=Wolbachia endosymbiont of Culex quinquefasciatus JHB
           GN=C1A_1076 PE=4 SV=1
          Length = 1342

 Score = 34.3 bits (77), Expect = 3.3
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +1

Query: 19  SHPPIYIGKVENQVSQSREEVAGVMQMSVTSSPPCDTQRRSSLETEPRTL 168
           S+P   + K+EN++ + +E++A + Q S TSS   D  R  +LET   TL
Sbjct: 509 SNPSSKVAKLENEMRKMKEDIAQLKQSSTTSSE--DKVRLGNLETTVETL 556