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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955154
Clone id TST39A01NGRL0022_F11
Library
Length 309
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_F11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GACTCGAGGATCTGATGACTTGTTGGGGGTGACGCGGATCGGGTATCTTCCACGCCGTAG
GAGAGATCTTGTGGGTTTGATCCTGGATGAACCATGCAGAGGTCTCCAAGCAAGTGCGAG
CAGATGGTCCGCTTCATCGCTCACGGAAGCGGAAGACAAAGCTAATCGCAAATTGCTGTT
TCTGCTGAAGAGGAATTCTACATTGAAAAGCTCTCACTTTGTTGACTGCTCAGGAGCGGA
AAAGGTAGCCTGGATATGATCTCTAAGAGATGCCCCTCGAGATACGCATGAGAATATATT
ATTCCTTGC
■■Homology search results ■■ -
sp_hit_id Q41396
Definition sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea
Align length 34
Score (bit) 33.5
E-value 0.016
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955154|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F11, 5'
         (309 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia ...    33   0.016
sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium...    35   0.020
sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus un...    35   0.15 
sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus li...    35   0.15 
sp|Q39258|VATE_ARATH V-type proton ATPase subunit E OS=Arabidops...    35   0.15 
sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembrya...    34   0.26 
sp|Q6UVK1|CSPG4_HUMAN Chondroitin sulfate proteoglycan 4 OS=Homo...    31   1.7  
sp|Q8VHY0|CSPG4_MOUSE Chondroitin sulfate proteoglycan 4 OS=Mus ...    30   2.9  
sp|Q9KQZ9|SYC_VIBCH Cysteinyl-tRNA synthetase OS=Vibrio cholerae...    30   3.8  
sp|A5F763|SYC_VIBC3 Cysteinyl-tRNA synthetase OS=Vibrio cholerae...    30   3.8  
sp|Q01038|RIR2_SHV21 Ribonucleoside-diphosphate reductase small ...    30   3.8  

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia
           oleracea GN=VATE PE=2 SV=1
          Length = 229

 Score = 33.5 bits (75), Expect(2) = 0.016
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+V+AEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-NEISVAAEEEFNIEKLQL 43



 Score = 24.6 bits (52), Expect(2) = 0.016
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 213 LTLLTAQERKR*PGYDL*EMPLEIRMRIYYSL 308
           L L+ A+++K  P Y+  E  +++R +I YS+
Sbjct: 41  LQLVEAEKKKIRPEYERKEKQVQVRRKIEYSM 72


>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium
           hirsutum GN=VATE PE=2 SV=1
          Length = 237

 Score = 34.7 bits (78), Expect(2) = 0.020
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQL 43



 Score = 23.1 bits (48), Expect(2) = 0.020
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 213 LTLLTAQERKR*PGYDL*EMPLEIRMRIYYSL 308
           L L+ A+++K    Y+  E  +EIR +I YS+
Sbjct: 41  LQLVEAEKKKIRQEYEKKEKQVEIRKKIEYSM 72


>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus
           unshiu GN=VATE PE=2 SV=1
          Length = 230

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQL 43


>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon
           GN=VATE PE=2 SV=1
          Length = 230

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQL 43


>sp|Q39258|VATE_ARATH V-type proton ATPase subunit E OS=Arabidopsis
           thaliana GN=VATE PE=2 SV=2
          Length = 230

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQL 43


>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E
           OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1
          Length = 226

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 18/37 (48%), Positives = 28/37 (75%)
 Frame = +1

Query: 109 SKCEQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           ++ +QMVRF+   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 8   NQIQQMVRFMRQEAEEKA-NEISVSAEEEFNIEKLQL 43


>sp|Q6UVK1|CSPG4_HUMAN Chondroitin sulfate proteoglycan 4 OS=Homo
           sapiens GN=CSPG4 PE=1 SV=1
          Length = 2322

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 107 GDLCMVHPGSNPQDLSYGVEDTRSASPPTSHQIL 6
           G L  VH G   QDL++ V D   ASPP + +++
Sbjct: 624 GSLVYVHRGGPAQDLTFRVSDGLQASPPATLKVV 657


>sp|Q8VHY0|CSPG4_MOUSE Chondroitin sulfate proteoglycan 4 OS=Mus
           musculus GN=Cspg4 PE=1 SV=2
          Length = 2327

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 110 LGDLCMVHPGSNPQDLSYGVEDTRSASPPTSHQIL 6
           +GD+  VH G   QDL++ V D   AS P + +++
Sbjct: 624 VGDIVYVHRGGPAQDLTFRVSDGMQASAPATLKVV 658


>sp|Q9KQZ9|SYC_VIBCH Cysteinyl-tRNA synthetase OS=Vibrio cholerae
           GN=cysS PE=3 SV=1
          Length = 459

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 11  SDDLLGVTRIGYLPRRRRDLVGLILDEPCRGLQASASRWSASSLTEAEDKANRKLLFLLK 190
           S+D+   + +G L R   D++G++  EP    Q SA         E ED A  + L  L+
Sbjct: 371 SEDMTNASALGSLMRELADVIGILYQEPEAFFQGSA---------EDEDAAQIEALIKLR 421

Query: 191 RNS 199
            +S
Sbjct: 422 NDS 424


>sp|A5F763|SYC_VIBC3 Cysteinyl-tRNA synthetase OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=cysS PE=3 SV=1
          Length = 459

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 11  SDDLLGVTRIGYLPRRRRDLVGLILDEPCRGLQASASRWSASSLTEAEDKANRKLLFLLK 190
           S+D+   + +G L R   D++G++  EP    Q SA         E ED A  + L  L+
Sbjct: 371 SEDMTNASALGSLMRELADVIGILYQEPEAFFQGSA---------EDEDAAQIEALIKLR 421

Query: 191 RNS 199
            +S
Sbjct: 422 NDS 424
tr_hit_id B6T2T0
Definition tr|B6T2T0|B6T2T0_MAIZE Vacuolar ATP synthase subunit E OS=Zea mays
Align length 34
Score (bit) 35.0
E-value 0.23
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955154|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F11, 5'
         (309 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6T2T0|B6T2T0_MAIZE Vacuolar ATP synthase subunit E OS=Zea ma...    35   0.23 
tr|Q84T14|Q84T14_PHAAT Vacuolar ATPase subunit E (Fragment) OS=P...    35   0.23 
tr|Q9XGW8|Q9XGW8_MAIZE Putative uncharacterized protein (Fragmen...    35   0.26 
tr|Q1H8R6|Q1H8R6_CHERU Vacuolar H(+)-ATPase (Fragment) OS=Chenop...    33   0.65 
tr|A7Q9X3|A7Q9X3_VITVI Chromosome chr8 scaffold_68, whole genome...    35   1.0  
tr|Q8SA35|Q8SA35_ORYSJ cDNA clone:J023086K07, full insert sequen...    36   1.1  
tr|A2WTF3|A2WTF3_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.1  
tr|A8IW47|A8IW47_CHLRE Vacuolar ATP synthase subunit E OS=Chlamy...    35   1.4  
tr|B4FVD5|B4FVD5_MAIZE Putative uncharacterized protein OS=Zea m...    35   1.9  
tr|Q9LKG0|Q9LKG0_SOLLC Putative vacuolar proton ATPase subunit E...    35   2.5  
tr|Q8S2S1|Q8S2S1_THEHA Vacuolar ATPase subunit E-like protein OS...    35   2.5  
tr|Q5KQI7|Q5KQI7_ORYSJ Os05g0480700 protein OS=Oryza sativa subs...    35   2.5  
tr|B7FMQ5|B7FMQ5_MEDTR Putative uncharacterized protein (Fragmen...    35   2.5  
tr|B7FMK2|B7FMK2_MEDTR Putative uncharacterized protein OS=Medic...    35   2.5  
tr|B3TLU2|B3TLU2_ELAGV Vacuolar ATP synthase subunit E OS=Elaeis...    35   2.5  
tr|A7QNC1|A7QNC1_VITVI Chromosome chr2 scaffold_132, whole genom...    35   2.5  
tr|A5C9Z5|A5C9Z5_VITVI Putative uncharacterized protein OS=Vitis...    35   2.5  
tr|A2Y5T4|A2Y5T4_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.5  
tr|B8IMY8|B8IMY8_METNO PRC-barrel domain protein OS=Methylobacte...    34   3.2  
tr|Q9ZR97|Q9ZR97_HORVU YLP OS=Hordeum vulgare GN=Ylp PE=2 SV=1         34   3.2  
tr|Q9SAQ7|Q9SAQ7_HORVU YLP OS=Hordeum vulgare GN=Ylp PE=2 SV=1         34   3.2  
tr|Q2XP43|Q2XP43_WHEAT Vacuolar proton ATPase subunit E OS=Triti...    34   3.2  
tr|Q2L9B8|Q2L9B8_WHEAT Vacuolar ATP synthase subunit E OS=Tritic...    34   3.2  
tr|A9NNQ7|A9NNQ7_PICSI Putative uncharacterized protein OS=Picea...    34   3.2  
tr|A9PI22|A9PI22_POPTR Putative uncharacterized protein OS=Popul...    34   4.2  
tr|A9P864|A9P864_POPTR Putative uncharacterized protein OS=Popul...    34   4.2  
tr|A1ZIY6|A1ZIY6_9SPHI Putative uncharacterized protein OS=Micro...    34   4.2  
tr|Q9FEH7|Q9FEH7_BETVU V-type H(+)-ATPase subunit E (Fragment) O...    33   5.5  
tr|Q9C9Z8|Q9C9Z8_ARATH Putative vacuolar ATP synthase subunit E;...    33   5.5  
tr|Q9SH70|Q9SH70_ARATH F22C12.4 OS=Arabidopsis thaliana PE=4 SV=1      33   7.2  

>tr|B6T2T0|B6T2T0_MAIZE Vacuolar ATP synthase subunit E OS=Zea mays
           PE=2 SV=1
          Length = 230

 Score = 35.0 bits (79), Expect(2) = 0.23
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEADEKA-NEISVSAEEEFNIEKLQL 43



 Score = 22.7 bits (47), Expect(2) = 0.23
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 213 LTLLTAQERKR*PGYDL*EMPLEIRMRIYYSL 308
           L L+ A+++K    Y+  E  +E+R +I YS+
Sbjct: 41  LQLVEAEKKKIRQEYERKEKQVEVRKKIEYSM 72


>tr|Q84T14|Q84T14_PHAAT Vacuolar ATPase subunit E (Fragment)
           OS=Phaseolus acutifolius PE=2 SV=1
          Length = 224

 Score = 34.7 bits (78), Expect(2) = 0.23
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 5   QQMVRFIRQEAEEKA-NEISVSAEEEFNIEKLQL 37



 Score = 23.1 bits (48), Expect(2) = 0.23
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +3

Query: 213 LTLLTAQERKR*PGYDL*EMPLEIRMRIYYSL 308
           L L+ A+++K    Y+  E  +EIR +I YS+
Sbjct: 35  LQLVEAEKKKIRQEYERKERQVEIRKKIEYSM 66


>tr|Q9XGW8|Q9XGW8_MAIZE Putative uncharacterized protein (Fragment)
           OS=Zea mays PE=2 SV=1
          Length = 128

 Score = 35.0 bits (79), Expect(2) = 0.26
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEADEKA-NEISVSAEEEFNIEKLQL 43



 Score = 22.7 bits (47), Expect(2) = 0.26
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 213 LTLLTAQERKR*PGYDL*EMPLEIRMRIYYSL 308
           L L+ A+++K    Y+  E  +E+R +I YS+
Sbjct: 41  LQLVEAEKKKIRQEYERKEKQVEVRKKIEYSM 72


>tr|Q1H8R6|Q1H8R6_CHERU Vacuolar H(+)-ATPase (Fragment)
           OS=Chenopodium rubrum GN=vhatp PE=2 SV=1
          Length = 172

 Score = 33.5 bits (75), Expect(2) = 0.65
 Identities = 18/34 (52%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+V+AEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-NEISVAAEEEFNIEKLQL 43



 Score = 22.7 bits (47), Expect(2) = 0.65
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 213 LTLLTAQERKR*PGYDL*EMPLEIRMRIYYSL 308
           L L+ A+++K    Y+  E  +E+R +I YS+
Sbjct: 41  LQLVEAEKKKIRQEYERKEKQVEVRRKIEYSM 72


>tr|A7Q9X3|A7Q9X3_VITVI Chromosome chr8 scaffold_68, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033658001
           PE=4 SV=1
          Length = 230

 Score = 34.7 bits (78), Expect(2) = 1.0
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFILQEAEEKA-NEISVSAEEEFNIEKLQL 43



 Score = 20.8 bits (42), Expect(2) = 1.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 213 LTLLTAQERKR*PGYDL*EMPLEIRMRIYYSL 308
           L L+ A+++K    Y+     +EIR +I YS+
Sbjct: 41  LQLVEAEKKKIRQEYERKAKQVEIRRKIEYSM 72


>tr|Q8SA35|Q8SA35_ORYSJ cDNA clone:J023086K07, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0684E06.9 PE=2 SV=1
          Length = 230

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ S+I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-SEISVSAEEEFNIEKLQL 43


>tr|A2WTF3|A2WTF3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_03137 PE=4 SV=1
          Length = 230

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ S+I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEAEEKA-SEISVSAEEEFNIEKLQL 43


>tr|A8IW47|A8IW47_CHLRE Vacuolar ATP synthase subunit E
           OS=Chlamydomonas reinhardtii GN=ATPvE PE=4 SV=1
          Length = 232

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/34 (58%), Positives = 25/34 (73%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           EQMVRFI   +  +S ++I VSAEEEF +EKL L
Sbjct: 11  EQMVRFIKQEAEEKS-NEIKVSAEEEFNLEKLQL 43


>tr|B4FVD5|B4FVD5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 230

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 11  QQMVRFIRQEADEKA-NEISVSAEEEFNIEKLQL 43


>tr|Q9LKG0|Q9LKG0_SOLLC Putative vacuolar proton ATPase subunit E
           (Fragment) OS=Solanum lycopersicum PE=2 SV=1
          Length = 237

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 19/34 (55%), Positives = 26/34 (76%)
 Frame = +1

Query: 118 EQMVRFIAHGSGRQS*SQIAVSAEEEFYIEKLSL 219
           +QMVRFI   +  ++ ++I+VSAEEEF IEKL L
Sbjct: 7   QQMVRFILQEAEEKA-NEISVSAEEEFNIEKLQL 39