BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955158|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F15, 5'
         (631 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AJA8|QUEA_DESPS S-adenosylmethionine:tRNA ribosyltransferas...    34   0.72 
sp|Q3AH18|YCF3_SYNSC Photosystem I assembly protein ycf3 OS=Syne...    33   1.6  
sp|Q7U435|YCF3_SYNPX Photosystem I assembly protein ycf3 OS=Syne...    32   2.1  
sp|Q9Q927|NTP2_RFVKA Nucleoside triphosphatase II OS=Rabbit fibr...    31   4.6  
sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2         31   6.1  
sp|O16977|NAS32_CAEEL Zinc metalloproteinase nas-32 OS=Caenorhab...    30   7.9  
sp|Q80T03|MUC6_MOUSE Mucin-6 OS=Mus musculus GN=Muc6 PE=2 SV=1         30   7.9  
sp|P61802|APTX_CIOIN Aprataxin OS=Ciona intestinalis GN=APTX PE=...    30   7.9  

>sp|Q6AJA8|QUEA_DESPS S-adenosylmethionine:tRNA
           ribosyltransferase-isomerase OS=Desulfotalea
           psychrophila GN=queA PE=3 SV=1
          Length = 358

 Score = 33.9 bits (76), Expect = 0.72
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
 Frame = +2

Query: 2   ERSSSLRSKGNVFYKQALHGGFG-FVAIRGKLARAHQLYHEALMASSNEDDTASCFKNLG 178
           E   SLR  G  F +  LH G+G F  +R +    H ++ E +       D     +  G
Sbjct: 200 ELLQSLRENGIQFGEVTLHVGYGTFAPVRAENIVEHNIHEEFVSVGQETVDKIIATRKAG 259

Query: 179 MLYWLWGKTEIQQILANQSSHKPVSASLLSPCKFYL 286
              W  G T ++ +    + H    A+    C  Y+
Sbjct: 260 GKIWAVGTTTVRSLEFAAAQHGGQIAATEGWCALYI 295


>sp|Q3AH18|YCF3_SYNSC Photosystem I assembly protein ycf3
           OS=Synechococcus sp. (strain CC9605) GN=ycf3 PE=3 SV=1
          Length = 173

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 86  GKLARAHQLYHEALMASSNEDDTASCFKNLGMLYWLWGK 202
           G+  RA + Y +AL  + N+    SC KN+G++Y  WG+
Sbjct: 86  GEEERAIETYRKALEENPNQP---SCLKNMGLIYEKWGR 121


>sp|Q7U435|YCF3_SYNPX Photosystem I assembly protein ycf3
           OS=Synechococcus sp. (strain WH8102) GN=ycf3 PE=3 SV=1
          Length = 173

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = +2

Query: 86  GKLARAHQLYHEALMASSNEDDTASCFKNLGMLYWLWGK 202
           G+  RA + Y  AL  +SN+    SC KN+G+++  WG+
Sbjct: 86  GEEERAIETYRRALDENSNQP---SCLKNMGLIFEKWGR 121


>sp|Q9Q927|NTP2_RFVKA Nucleoside triphosphatase II OS=Rabbit fibroma
           virus (strain Kasza) GN=NPH2 PE=3 SV=1
          Length = 678

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = -2

Query: 519 HVPDVIDMSSSGSFAEFSNAS---HKYIRTGACATLSVLDTHTP----QSTIFTSTLSMC 361
           H+P     S S ++ + SN S     YI       ++ + T+TP       +F ST+S C
Sbjct: 351 HIPGGTLFSISEAYVKNSNDSLNKFMYIEEEKRNLVNAIKTYTPPKQSSGIVFVSTVSQC 410

Query: 360 CIHASPL*ERLP 325
            ++   L ERLP
Sbjct: 411 DVYKQYLSERLP 422


>sp|Q6W4X9|MUC6_HUMAN Mucin-6 OS=Homo sapiens GN=MUC6 PE=1 SV=2
          Length = 2392

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +1

Query: 370 QCTCEYCGL---GGVRVEHTQCSTCSC 441
           +C CE+ G+   GG  + HT C TCSC
Sbjct: 825 ECPCEFSGVSYPGGAEL-HTDCRTCSC 850


>sp|O16977|NAS32_CAEEL Zinc metalloproteinase nas-32
           OS=Caenorhabditis elegans GN=nas-32 PE=2 SV=3
          Length = 651

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 16/37 (43%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
 Frame = +1

Query: 352 MDTTH*QCTCEY---CGLGGVRVEHTQCSTCSCPYVF 453
           M  TH  C+C     CG GG       CS C CPY F
Sbjct: 386 MLNTHYSCSCPTILSCGNGGF-TNPANCSVCICPYGF 421


>sp|Q80T03|MUC6_MOUSE Mucin-6 OS=Mus musculus GN=Muc6 PE=2 SV=1
          Length = 2850

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +1

Query: 370 QCTCEYCGL---GGVRVEHTQCSTCSC 441
           +C C+Y G+   GG  + HT C TC+C
Sbjct: 868 ECPCDYAGVSYPGGFEL-HTDCKTCTC 893


>sp|P61802|APTX_CIOIN Aprataxin OS=Ciona intestinalis GN=APTX PE=2
           SV=1
          Length = 380

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 490 LRILCRILKCITQIHKDRSMCYIECARHAHPPI---HNI 383
           +RIL R+LK    +  D   CY+EC + +HP +   HN+
Sbjct: 1   MRILYRLLK----MADDTVKCYLECCKSSHPKLPLPHNV 35

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955158|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F15, 5'
         (631 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4ER44|Q4ER44_LISMO Putative uncharacterized protein OS=Liste...    35   2.9  
tr|A7SLY0|A7SLY0_NEMVE Predicted protein OS=Nematostella vectens...    35   2.9  
tr|Q8YA78|Q8YA78_LISMO Lmo0281 protein OS=Listeria monocytogenes...    35   3.7  
tr|B8PB07|B8PB07_9APHY Predicted protein OS=Postia placenta Mad-...    35   3.7  
tr|A9V8K2|A9V8K2_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.4  

>tr|Q4ER44|Q4ER44_LISMO Putative uncharacterized protein OS=Listeria
           monocytogenes str. 1/2a F6854 GN=LMOf6854_0296 PE=4 SV=1
          Length = 223

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = +2

Query: 62  GFGFVAIRGKLARAHQLYHEALMASSNEDDTASCFKNLGMLYW-LWGKTEIQQILANQSS 238
           GF F  +R  LAR H  +      +S+ D     F N+G L+  L+ K  +  IL  +  
Sbjct: 115 GFQFFIMRD-LAR-HAFFKSLFAETSSSDKLELSFSNMGKLHGTLYEKDSV--ILPKEMR 170

Query: 239 HKPVSA-SLLSPCKFYLLKCVRSLLLASKHGSLSHKGEAWI 358
              ++A S LS   FY     + L L  +HG +  KG+ WI
Sbjct: 171 TSTIAAYSNLSKSSFY-----KQLTLLKEHGKIWKKGKEWI 206


>tr|A7SLY0|A7SLY0_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g246103 PE=4 SV=1
          Length = 452

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = +2

Query: 8   SSSLRSKGNVFYKQALHGGFGFVAIRGKLARAHQLYHEALMASSNEDDTASCFKNLGM 181
           S S R KGN F+K+A   G   +    +L  A + Y++A   + ++ + AS FKN+ +
Sbjct: 6   SLSAREKGNDFFKKAGVEGLAPILQEARLLDALKSYNQANQLARSDSELASAFKNIAI 63


>tr|Q8YA78|Q8YA78_LISMO Lmo0281 protein OS=Listeria monocytogenes
           GN=lmo0281 PE=4 SV=1
          Length = 223

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
 Frame = +2

Query: 62  GFGFVAIRGKLARAHQLYHEALMASSNEDDTASCFKNLGMLYW-LWGKTEIQQILANQSS 238
           GF F  +R  LAR H  +      +S+ D     F N+G L+  L+ K  +  IL  +  
Sbjct: 115 GFQFFIMRD-LAR-HAFFKSLFAETSSSDKLELSFSNMGKLHGTLYEKDSV--ILPKEMR 170

Query: 239 HKPVSA-SLLSPCKFYLLKCVRSLLLASKHGSLSHKGEAWI 358
              ++A S LS   FY     + L L  +HG +  KG+ W+
Sbjct: 171 TSTIAAYSNLSKSSFY-----KQLTLLKEHGKIWKKGKEWV 206


>tr|B8PB07|B8PB07_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_97742 PE=4 SV=1
          Length = 1719

 Score = 35.0 bits (79), Expect = 3.7
 Identities = 20/59 (33%), Positives = 32/59 (54%)
 Frame = -2

Query: 549 FACANCAFATHVPDVIDMSSSGSFAEFSNASHKYIRTGACATLSVLDTHTPQSTIFTST 373
           F     AF+T VP     SS G+F+ F+NA  K+ +T   ++ S+  T  PQ++  + T
Sbjct: 385 FGSTPAAFSTTVPS----SSGGAFSAFANAPSKFGQTAFSSSASISPTPAPQASASSIT 439


>tr|A9V8K2|A9V8K2_MONBE Predicted protein OS=Monosiga brevicollis
           GN=11220 PE=4 SV=1
          Length = 449

 Score = 34.3 bits (77), Expect = 6.4
 Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 4/119 (3%)
 Frame = +2

Query: 8   SSSLRSKGNVFYKQALHGGFGFVAIRGKLARAHQLYHEA-LMASSNEDDTASCFKNLGML 184
           S  LR +GN  Y+ A   G   V +  +L  A +LY++A   A  N    AS  KNL M 
Sbjct: 7   SKRLRVRGNAHYQGASAPGLAPVLVEARLKDAIRLYYQAETAAGRNILSRASAHKNLAMA 66

Query: 185 YWLWGKTEIQQILAN---QSSHKPVSASLLSPCKFYLLKCVRSLLLASKHGSLSHKGEA 352
           +    +  +++  A      +   + A+       Y L  +RS   A   G  +H   A
Sbjct: 67  HARLFEAHVRRYTARVGAAGASDALPAAEQRMLTHYALTSMRSFASARLDGLQAHGSHA 125