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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955164
Clone id TST39A01NGRL0022_F21
Library
Length 530
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_F21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAAGCGAGGTACAGAAGTAGTAGCGATCGCAGCCATGGCGATTAGGGTTTTCAATTCAT
CTGTTTAATGTTTCTGGTTGCCGACAGTGTGCTTTTTGGTCATCTCATGTTTAATCAGAC
GTGTTTTTGATTTTGAAATTTGGGGTCCTCGAAACCTTCTGTTTTTTACAGGTTTCTTTT
AGGCTTCCTTGTTATGGCCAGAGGCAGGCGTTCTCCATCTTCTGATGATGAGGAGCCTCC
TGCCTCTGCTGCGGAGGAGGAAACTAGCGCTGATGATCAGGACGAGCAAGAGGAGTTGGA
TGCTGAAGAGCTGGAGGCCATAGAGGCTGCTGATCCAGATGAAGAAATAGCAGACACCCC
TACTACTCCCAAGAGTGATGATGAGGGCGAGGAGGAAGATGCAGAGACTGATGATGAGAC
TCCCATCTCTCCTTCGAAACAAGCCATTGCCAGAAGAGAAAAGCAACGCTTGAGAGAGAT
GAAGAGGAAGAATAAAGAGGAGCTCGACAGGTTTTATCAGCAACAAAATG
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955164|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F21, 5'
         (510 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q85CY3
Definition tr|Q85CY3|Q85CY3_9TELE NADH-ubiquinone oxidoreductase chain 6 OS=Retropinna retropinna
Align length 39
Score (bit) 33.5
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955164|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_F21, 5'
         (510 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q85CY3|Q85CY3_9TELE NADH-ubiquinone oxidoreductase chain 6 OS...    33   6.1  
tr|Q8TMG3|Q8TMG3_METAC Putative uncharacterized protein OS=Metha...    33   8.0  

>tr|Q85CY3|Q85CY3_9TELE NADH-ubiquinone oxidoreductase chain 6
           OS=Retropinna retropinna GN=ND6 PE=3 SV=1
          Length = 173

 Score = 33.5 bits (75), Expect = 6.1
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -3

Query: 469 ALLFSSGNGLFRRRDGSLIISLCIFLLALIITLGSSRGV 353
           AL+FSSG GL       L++S C+ LL L + L  +RG+
Sbjct: 134 ALMFSSGGGL-------LVVSACVLLLTLFVVLELTRGL 165


>tr|Q8TMG3|Q8TMG3_METAC Putative uncharacterized protein
           OS=Methanosarcina acetivorans GN=MA_2695 PE=4 SV=1
          Length = 851

 Score = 33.1 bits (74), Expect = 8.0
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 10/55 (18%)
 Frame = -3

Query: 505 ELLFILPLHLSQA----------LLFSSGNGLFRRRDGSLIISLCIFLLALIITL 371
           EL + +PL L +A          LL    NGL++R DG+ ++SL + LL  I TL
Sbjct: 361 ELPYFIPLPLIEASRFFGSIVGFLLLLLANGLWKRIDGAYMLSLIVLLLGGIFTL 415