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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955178
Clone id TST39A01NGRL0022_G11
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_G11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TGCATTCACACTCCAGCAGCAGCTTCAAGCAGCAGCATGTGAGTAGCATGCAGCATGTAG
AAGGCGGCGGGGCAAGCGTGCTTCCGAGCGTGGCGAAAGTGAAGATCATAACAGGAGGCA
GCACAAGTCATGGAGGAGGAGCTGGCCTTGGCCTTGGAAGCAATGGGCTGGCTTCAGCAT
CTACAACAAGCACAAGTGCAGGGATTAGCTATGGTAACCATGGGTTGGCACCCTCTAAGA
TTGCCATCGCAGGAGGTGCACCAGCTGGAAGTTATGGAAACAATATTTCCCCTACAAGCA
CAAGTGCAGGAGCGGGAGGAAGCTATGGACACAATGGGCTAACCCTTTCCTCAGGCTCCC
CAAGCGAGCCTGCCGGTGGCGTTGACCCTCGTGCGAACATGGACAATAATGGCAAGACTA
CTGCAAGCAACATACATACAAGCTCTGCTCTTCCAAAGTCTCCCCCTGCTATCCATACGG
ACGATCTCCGCTTACCTTCCTCCTTGGAGCTAAAACCCTCTAAAAAACCAGTGAGATATA
GAGAATGCCTGAAGAACCATGCTGCAAACCTCGGCGGGC
■■Homology search results ■■ -
sp_hit_id O95155
Definition sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens
Align length 91
Score (bit) 38.9
E-value 0.019
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955178|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_G11, 5'
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo ...    39   0.019
sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660 OS=Arabid...    36   0.16 
sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 OS=Homo s...    33   0.79 
sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo sa...    33   0.79 
sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 OS=Homo sa...    33   1.0  
sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 OS=Homo sa...    32   1.8  
sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 OS=Homo sa...    32   1.8  
sp|P60014|KR10A_HUMAN Keratin-associated protein 10-10 OS=Homo s...    32   2.3  
sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 OS=Homo sa...    32   3.0  
sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 OS=Homo sa...    32   3.0  
sp|O70343|PRGC1_MOUSE Peroxisome proliferator-activated receptor...    31   3.9  
sp|O43068|MDE4_SCHPO Mei4-dependent protein 4 OS=Schizosaccharom...    31   5.1  
sp|Q6XHA6|ROC10_DICDI Probable inactive serine/threonine-protein...    30   6.7  
sp|Q4WT99|PRP5_ASPFU Pre-mRNA-processing ATP-dependent RNA helic...    30   6.7  
sp|P60413|KR10C_HUMAN Keratin-associated protein 10-12 OS=Homo s...    30   6.7  
sp|P60411|KR109_HUMAN Keratin-associated protein 10-9 OS=Homo sa...    30   6.7  
sp|Q6B3N0|HXA5_CHICK Homeobox protein Hox-A5 OS=Gallus gallus GN...    30   6.7  
sp|Q9FKP8|Y5541_ARATH ZF-HD homeobox protein At5g65410 OS=Arabid...    30   8.7  
sp|Q80WC3|TNC18_MOUSE Trinucleotide repeat-containing gene 18 pr...    30   8.7  
sp|Q8K4B4|IL23R_MOUSE Interleukin-23 receptor OS=Mus musculus GN...    30   8.7  
sp|P28284|ICP0_HHV2H Trans-acting transcriptional protein ICP0 O...    30   8.7  
sp|Q929T6|CRCB2_LISIN Protein crcB homolog 2 OS=Listeria innocua...    30   8.7  

>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo
           sapiens GN=UBE4B PE=1 SV=1
          Length = 1302

 Score = 38.9 bits (89), Expect = 0.019
 Identities = 30/91 (32%), Positives = 41/91 (45%)
 Frame = +3

Query: 249 AGGAPAGSYGNNISPXXXXXXXXXXYGHNGLTLSSGSPSEPAGGVDPRANMDNNGKTTAS 428
           A G  AGS  +  SP          +  +G+++ S SPS PA    P+A        ++S
Sbjct: 316 ASGTAAGSQPS--SPRYRPYTVTHPWASSGVSILSSSPSPPALASSPQAV-----PASSS 368

Query: 429 NIHTSSALPKSPPAIHTDDLRLPSSLELKPS 521
               SS  P  PPA  +   R PSSL + PS
Sbjct: 369 RQRPSSTGPPLPPASPSATSRRPSSLRISPS 399


>sp|Q9SB61|Y4466_ARATH ZF-HD homeobox protein At4g24660
           OS=Arabidopsis thaliana GN=At4g24660 PE=1 SV=1
          Length = 220

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = +3

Query: 531 VRYRECLKNHAANLGG 578
           +RYRECLKNHA N+GG
Sbjct: 47  IRYRECLKNHAVNIGG 62


>sp|P60412|KR10B_HUMAN Keratin-associated protein 10-11 OS=Homo
           sapiens GN=KRTAP10-11 PE=1 SV=1
          Length = 298

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 332 VSIASSRSCTCACRGNIV-SITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C  AC  +   S  +S CT        CQP    ++PC  ACC
Sbjct: 50  VSCVSSPCCQAACEPSACQSGCTSSCTPSCCQQSSCQPACCTSSPCQQACC 100


>sp|P60368|KR102_HUMAN Keratin-associated protein 10-2 OS=Homo
           sapiens GN=KRTAP10-2 PE=2 SV=1
          Length = 255

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 332 VSIASSRSCTCACRGNIV-SITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C  AC  +   S  +S CT        CQP    ++PC  ACC
Sbjct: 50  VSCVSSPCCQAACEPSACQSGCTSSCTPSCCQQSSCQPACCTSSPCQQACC 100


>sp|P60369|KR103_HUMAN Keratin-associated protein 10-3 OS=Homo
           sapiens GN=KRTAP10-3 PE=1 SV=2
          Length = 221

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 332 VSIASSRSCTCACRGN-IVSITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C  AC  +   S  +S CT        CQP    ++PC  ACC
Sbjct: 50  VSCVSSPCCQAACEPSPCQSGCTSSCTPSCCQQSSCQPACCTSSPCQQACC 100


>sp|P60370|KR105_HUMAN Keratin-associated protein 10-5 OS=Homo
           sapiens GN=KRTAP10-5 PE=2 SV=2
          Length = 271

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 332 VSIASSRSCTCACRGNIVS--ITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C  AC  +      TSS   SC      CQP    ++PC  ACC
Sbjct: 44  VSCVSSPCCQAACEPSPCQSGCTSSCTPSC------CQPACCASSPCQQACC 89


>sp|P60331|KR101_HUMAN Keratin-associated protein 10-1 OS=Homo
           sapiens GN=KRTAP10-1 PE=2 SV=2
          Length = 282

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
 Frame = -2

Query: 332 VSIASSRSCTCACRGN-IVSITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C  AC  +   S  +S CT        CQP    ++PC  ACC
Sbjct: 50  VSRVSSPCCQAACEPSPCQSGCTSSCTPSCCQQSSCQPACCTSSPCQQACC 100


>sp|P60014|KR10A_HUMAN Keratin-associated protein 10-10 OS=Homo
           sapiens GN=KRTAP10-10 PE=1 SV=1
          Length = 251

 Score = 32.0 bits (71), Expect = 2.3
 Identities = 20/52 (38%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = -2

Query: 332 VSIASSRSCTCACRGNIVS--ITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C  AC  +      TSS  T C      CQP    ++PC  ACC
Sbjct: 45  VSCVSSPCCQTACEPSACQSGYTSSCTTPCYQQ-SSCQPDCCTSSPCQQACC 95


>sp|P60409|KR107_HUMAN Keratin-associated protein 10-7 OS=Homo
           sapiens GN=KRTAP10-7 PE=2 SV=2
          Length = 375

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
 Frame = -2

Query: 332 VSIASSRSCTCACR------GNIVSITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C   C       G I S T S C         CQP    ++PC  ACC
Sbjct: 184 VSCVSSPCCQAVCEPSPCQSGCISSCTPSCCQQSS-----CQPACCTSSPCQQACC 234


>sp|P60371|KR106_HUMAN Keratin-associated protein 10-6 OS=Homo
           sapiens GN=KRTAP10-6 PE=2 SV=1
          Length = 365

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -2

Query: 332 VSIASSRSCTCACRGN-IVSITSSWCTSCDGNLRGCQPMVTIANPCTCACC 183
           VS  SS  C   C  +   S  +S CT        CQP    ++PC  ACC
Sbjct: 179 VSCVSSPCCQAVCEPSPCQSGCTSSCTPSCCQQSSCQPTCCTSSPCQQACC 229
tr_hit_id A7QCD8
Definition tr|A7QCD8|A7QCD8_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera
Align length 41
Score (bit) 45.1
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955178|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_G11, 5'
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QCD8|A7QCD8_VITVI Chromosome undetermined scaffold_77, whol...    45   0.003
tr|Q9FRL5|Q9FRL5_ARATH Putative uncharacterized protein F22H5.4 ...    44   0.006
tr|B0LK13|B0LK13_SARHE Zinc finger-homeodomain protein 2 OS=Saru...    42   0.019
tr|A7NTB6|A7NTB6_VITVI Chromosome chr18 scaffold_1, whole genome...    40   0.071
tr|Q24300|Q24300_DROME 1.28 protein OS=Drosophila melanogaster G...    40   0.12 
tr|A5B3X6|A5B3X6_VITVI Putative uncharacterized protein OS=Vitis...    39   0.16 
tr|B8LM89|B8LM89_PICSI Putative uncharacterized protein OS=Picea...    39   0.21 
tr|A9NQC4|A9NQC4_PICSI Putative uncharacterized protein OS=Picea...    39   0.21 
tr|B0LK18|B0LK18_ASPOF Zinc finger-homeodomain protein 1 OS=Aspa...    38   0.35 
tr|A9NWR9|A9NWR9_PICSI Putative uncharacterized protein OS=Picea...    37   0.60 
tr|A7PUT9|A7PUT9_VITVI Chromosome chr4 scaffold_32, whole genome...    37   0.79 
tr|A5C2J0|A5C2J0_VITVI Putative uncharacterized protein (Fragmen...    37   0.79 
tr|B0LK12|B0LK12_SARHE Zinc finger homeodomain protein 1 OS=Saru...    37   1.0  
tr|Q9XHW0|Q9XHW0_ORYSJ 10A19I.6 OS=Oryza sativa subsp. japonica ...    36   1.3  
tr|B0LK10|B0LK10_ESCCA Zinc finger-homeodomain protein 2 (Fragme...    36   1.3  
tr|A9NWY2|A9NWY2_PICSI Putative uncharacterized protein OS=Picea...    36   1.3  
tr|B0LK16|B0LK16_ACOAM Zinc finger-homeodomain protein 1 OS=Acor...    36   1.8  
tr|A9RDY7|A9RDY7_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.8  
tr|A7QR20|A7QR20_VITVI Chromosome undetermined scaffold_147, who...    36   1.8  
tr|A7PDM4|A7PDM4_VITVI Chromosome chr17 scaffold_12, whole genom...    36   1.8  
tr|A9Y0C6|A9Y0C6_SALSA Paired-like homeodomain transcription fac...    35   2.3  
tr|Q9ARE3|Q9ARE3_FLABI ZF-HD homeobox protein OS=Flaveria bident...    35   2.3  
tr|Q2RB28|Q2RB28_ORYSJ Os11g0128300 protein OS=Oryza sativa subs...    35   2.3  
tr|Q2QYC5|Q2QYC5_ORYSJ ZF-HD protein dimerisation region contain...    35   2.3  
tr|Q2Q493|Q2Q493_ARATH Mini zinc finger 3 OS=Arabidopsis thalian...    35   2.3  
tr|B8LM96|B8LM96_PICSI Putative uncharacterized protein OS=Picea...    35   2.3  
tr|B8BLT3|B8BLT3_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.3  
tr|B8BIU8|B8BIU8_ORYSI Putative uncharacterized protein OS=Oryza...    35   2.3  
tr|A9U432|A9U432_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.3  
tr|A9Y0C8|A9Y0C8_SALSA Paired-like homeodomain transcription fac...    35   3.0  

>tr|A7QCD8|A7QCD8_VITVI Chromosome undetermined scaffold_77, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035356001 PE=4 SV=1
          Length = 281

 Score = 45.1 bits (105), Expect = 0.003
 Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 459 SPPAIHTDDLRLPSSLELK-PSKKPVRYRECLKNHAANLGG 578
           S P I ++   +PS+LE   P KK VRYRECLKNHAA +GG
Sbjct: 48  SAPQIPSNGPPIPSTLEDHVPYKKAVRYRECLKNHAAAMGG 88


>tr|Q9FRL5|Q9FRL5_ARATH Putative uncharacterized protein F22H5.4
           (At1g75240) (Putative uncharacterized protein At1g75240)
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At1g75240 PE=2 SV=1
          Length = 309

 Score = 43.9 bits (102), Expect = 0.006
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +3

Query: 381 VDPRANMDNNGKTTASNIHTSSALPKSPPAIHTDDLRLPSSLELKPSKKP-VRYRECLKN 557
           +D   N +NN    + N  T          +     + PSS  +  + KP VRYRECLKN
Sbjct: 33  IDDNCNGNNNNTRVSCNSQT----------LDHHQSKSPSSFSISAAAKPTVRYRECLKN 82

Query: 558 HAANLGG 578
           HAA++GG
Sbjct: 83  HAASVGG 89


>tr|B0LK13|B0LK13_SARHE Zinc finger-homeodomain protein 2 OS=Saruma
           henryi GN=ZHD2 PE=2 SV=1
          Length = 258

 Score = 42.4 bits (98), Expect = 0.019
 Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
 Frame = +3

Query: 420 TASNIHTSSALPKSPPAIH---TDDLRLPSSLELK---PSKKPVRYRECLKNHAANLGG 578
           T+S  H    +   PP  H   +    LPS+  L+   P KK VRYRECLKNHAA++GG
Sbjct: 16  TSSYGHHIHMIHDPPPHTHIIPSTAPPLPSNGPLEDHLPYKKVVRYRECLKNHAASMGG 74


>tr|A7NTB6|A7NTB6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014603001
           PE=4 SV=1
          Length = 250

 Score = 40.4 bits (93), Expect = 0.071
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = +3

Query: 519 SKKPVRYRECLKNHAANLGG 578
           SK  VRYRECLKNHAAN+GG
Sbjct: 94  SKASVRYRECLKNHAANIGG 113


>tr|Q24300|Q24300_DROME 1.28 protein OS=Drosophila melanogaster
           GN=jing PE=2 SV=1
          Length = 217

 Score = 39.7 bits (91), Expect = 0.12
 Identities = 25/68 (36%), Positives = 35/68 (51%)
 Frame = +3

Query: 333 NGLTLSSGSPSEPAGGVDPRANMDNNGKTTASNIHTSSALPKSPPAIHTDDLRLPSSLEL 512
           N LT+ +G  +  +    P      +  TTAS IHT  + P +PP   +  L  PS++EL
Sbjct: 59  NSLTIGAGVGNNSSPEATPPITAPAS-TTTASPIHTPKSPPPTPPINKSPSL--PSNIEL 115

Query: 513 KPSKKPVR 536
           KP  KP R
Sbjct: 116 KPPAKPAR 123


>tr|A5B3X6|A5B3X6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_013011 PE=4 SV=1
          Length = 444

 Score = 39.3 bits (90), Expect = 0.16
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
 Frame = +3

Query: 360 PSEPAGGVDPRANMDNNGKTTASNIHTSSALPKSPPAIHTDDLRLPSSL----------- 506
           P +P+ G+ P+          A+N       P +    H +++ LP+S            
Sbjct: 158 PQKPSTGM-PKTMPHIEAPVDAANSSNCLNAPATTQEEHEEEIGLPTSYDSFGNSTRVKM 216

Query: 507 -----ELKPSKKPVRYRECLKNHAANLGG 578
                E  P+ +  RYRECLKNHA ++GG
Sbjct: 217 ATSGGEGSPAPRKPRYRECLKNHAVSIGG 245


>tr|B8LM89|B8LM89_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score = 38.9 bits (89), Expect = 0.21
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 12/59 (20%)
 Frame = +3

Query: 438 TSSALPKSPPAIHTDDLRLPSSLELK--PSK----------KPVRYRECLKNHAANLGG 578
           T++A P  PP +H +D+R     + +  P +          K VRYREC KNHAA++GG
Sbjct: 66  TAAARPGPPPPVH-EDMRTQQHQQQQHYPQENNRNADNILIKAVRYRECRKNHAASIGG 123


>tr|A9NQC4|A9NQC4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 249

 Score = 38.9 bits (89), Expect = 0.21
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 519 SKKPVRYRECLKNHAANLGG 578
           SKK VRYREC+KNHAA +GG
Sbjct: 49  SKKTVRYRECMKNHAAAMGG 68


>tr|B0LK18|B0LK18_ASPOF Zinc finger-homeodomain protein 1
           OS=Asparagus officinalis GN=ZHD1 PE=2 SV=1
          Length = 274

 Score = 38.1 bits (87), Expect = 0.35
 Identities = 19/39 (48%), Positives = 26/39 (66%)
 Frame = +3

Query: 462 PPAIHTDDLRLPSSLELKPSKKPVRYRECLKNHAANLGG 578
           PP   T+D    + +  KP+   V+YRECLKNHAA++GG
Sbjct: 47  PPPPPTEDHHHQAIVPKKPAAV-VKYRECLKNHAASIGG 84


>tr|A9NWR9|A9NWR9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 279

 Score = 37.4 bits (85), Expect = 0.60
 Identities = 23/67 (34%), Positives = 31/67 (46%)
 Frame = +3

Query: 378 GVDPRANMDNNGKTTASNIHTSSALPKSPPAIHTDDLRLPSSLELKPSKKPVRYRECLKN 557
           G+ P  N + N        H  S+   S P   T+      +    P  K +RYREC +N
Sbjct: 38  GLYPNGNGNGNTAIIMVLPHDDSS---SNPLNPTNPRNPMEAAAAPPPTKVLRYRECQRN 94

Query: 558 HAANLGG 578
           HAAN+GG
Sbjct: 95  HAANIGG 101