DK955183
Clone id TST39A01NGRL0022_G16
Library
Length 590
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_G16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
TGCGCCTGCACATCACAACTTCACACACGAGGCGAGCACGGCCTCCTCGCATACGCAGAT
GAGCGATGGGTTGTAAGCTTTGTACAGCGCAGGTATGTAACGGGTTGTTGAGCTTGGAGG
GTGGAAATGGAAATGCTGTTGAGGCTTAGGGTTGCAGACCACAAGGCAGCACCACACACA
CTCATGCACACACACCCAACGATCCTGTGTGCACAATTTAGCTTGAAGCACTTTAACACA
CACACCCATCACACGCACACGCACTTGCACACACACACATGGTCCCTTGTTCTTCAGCAG
TAATGGGTACTTTCTGAAATGGGTGCCCAAGAGAGCTATGGCGATGCGAAGGCGAGCATC
ATTCAATGCAGCAAGTCTAACTAGACGGCCAAGCGTTTCCCCTGAACGGAAAAGGGACGA
AATCGCCAACAGTTTGCAGCAGCATCACCAGCAGCAGAGGACGCCTGTAGGTACCAACGA
TACCACCACTATCAATACATCCTCCTCCCCTGCTACACATGCCACCTCAAGCTCTGTGGA
GAAGGGTTACCCCCAACATCCTCACAGTTTTATCGTCGATCCTTACACGC
■■Homology search results ■■ -
sp_hit_id Q54QR1
Definition sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyostelium discoideum
Align length 41
Score (bit) 27.7
E-value 0.75
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955183|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_G16, 5'
(590 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost... 28 0.75
sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Sola... 33 0.81
sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv... 29 1.7
sp|P07548|DFD_DROME Homeotic protein deformed OS=Drosophila mela... 32 1.8
sp|Q9Z876|GLGB_CHLPN 1,4-alpha-glucan-branching enzyme OS=Chlamy... 32 2.4
sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 ... 31 4.0
sp|Q09728|CUF1_SCHPO Metal-binding regulatory protein cuf1 OS=Sc... 31 4.0
sp|Q40410|MT2_NICPL Metallothionein-like protein type 2 OS=Nicot... 31 5.3
sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 O... 30 6.9
sp|Q8MKE4|MT3_SHEEP Metallothionein-3 OS=Ovis aries GN=MT3 PE=3 ... 30 6.9
sp|P55944|MT3_PIG Metallothionein-3 OS=Sus scrofa GN=MT3 PE=2 SV=1 30 6.9
sp|Q2PFZ0|MT3_MACFA Metallothionein-3 OS=Macaca fascicularis GN=... 30 6.9
sp|P25713|MT3_HUMAN Metallothionein-3 OS=Homo sapiens GN=MT3 PE=... 30 6.9
sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3 30 9.0
sp|Q7NYL6|ISPD_CHRVO 2-C-methyl-D-erythritol 4-phosphate cytidyl... 30 9.0

>sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A
OS=Dictyostelium discoideum GN=limA PE=2 SV=1
Length = 1183

Score = 27.7 bits (60), Expect(2) = 0.75
Identities = 11/41 (26%), Positives = 22/41 (53%)
Frame = +3

Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVPCSS 296
+H+H+H+ + P H+HP +H+ +H H P ++
Sbjct: 706 SHSHSHSHSHPQHPHSHPQHPHSHPHQSHSHSHAHSQPTTT 746



Score = 24.6 bits (52), Expect(2) = 0.75
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1

Query: 142 RLRVADHKAAPHTLMHTHP 198
+L+ DH A P+ L H+HP
Sbjct: 685 KLKENDHHAHPNPLEHSHP 703


>sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Solanum
lycopersicum PE=3 SV=1
Length = 84

Score = 33.5 bits (75), Expect = 0.81
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -2

Query: 298 AEEQGTMCVCASACACDGCVC*SASS 221
A E G C C S+C CD C C SAS+
Sbjct: 56 ATEGGNGCKCGSSCKCDPCNCCSAST 81


>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
Length = 413

Score = 28.9 bits (63), Expect(2) = 1.7
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2

Query: 313 KVPITAEEQGTMCVCASACACDGCVC*SASS*IVHTGSLGVCA*VCV 173
+V + A +CVCA C C C+C A + L VCA +CV
Sbjct: 104 RVCVCARVCARVCVCACVCVC-ACLCVCAC--LCVCACLCVCACLCV 147



Score = 22.3 bits (46), Expect(2) = 1.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3

Query: 195 VCVHECVWCCLVVC 154
VCV CV CL VC
Sbjct: 173 VCVCLCVCVCLCVC 186



Score = 28.5 bits (62), Expect(2) = 3.7
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = -2

Query: 313 KVPITAEEQGTMCVCASACACDG-CVC*SASS*IVHTGSLGVCA*VCV 173
+V + A +CVCA C C CVC + VCA VCV
Sbjct: 76 RVSVCARVCARVCVCARVCVCARVCVCARVCVCARVCARVCVCACVCV 123



Score = 27.7 bits (60), Expect(2) = 3.7
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2

Query: 280 MCVCASACACDGCVC*SASS*IVHTGSLGVCA*VCV 173
+CVCA C C C+C A + L VCA +CV
Sbjct: 139 LCVCACLCVC-ACLCVCAC--LCVCACLCVCACLCV 171



Score = 22.3 bits (46), Expect(2) = 3.7
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -3

Query: 195 VCVHECVWCCLVVC 154
VCV CV CL VC
Sbjct: 179 VCVCLCVCVCLCVC 192



Score = 21.6 bits (44), Expect(2) = 3.7
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -3

Query: 195 VCVHECVWCCLVVC 154
VC CV CL VC
Sbjct: 117 VCACVCVCACLCVC 130


>sp|P07548|DFD_DROME Homeotic protein deformed OS=Drosophila
melanogaster GN=Dfd PE=1 SV=2
Length = 586

Score = 32.3 bits (72), Expect = 1.8
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +3

Query: 165 GSTTHTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVP---CSSAVMG 308
G T H H+ P D V + + H H H+H+ +HTH +P +SA+ G
Sbjct: 72 GMTGHPHSMHPADMVS----DYMAHHHNPHSHSHSHTHSLPHHHSNSAISG 118


>sp|Q9Z876|GLGB_CHLPN 1,4-alpha-glucan-branching enzyme OS=Chlamydia
pneumoniae GN=glgB PE=3 SV=1
Length = 720

Score = 32.0 bits (71), Expect = 2.4
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +3

Query: 327 PRELWRCEGEHHSMQQV*LDGQAFPLNGKGTKSPTVC 437
P + RCEG H + D ++F +GKG ++P VC
Sbjct: 658 PSYVLRCEGVKHCELLLNTDDESFGGSGKGNRAPVVC 694


>sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204
OS=Homo sapiens PE=2 SV=2
Length = 223

Score = 31.2 bits (69), Expect = 4.0
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +3

Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTH 278
T TH HTP+ + T L L H H +HAH AHTH
Sbjct: 94 TGTHVHTPHTQMHTRIL-TLSHMH-THAHTHAHTH 126


>sp|Q09728|CUF1_SCHPO Metal-binding regulatory protein cuf1
OS=Schizosaccharomyces pombe GN=cuf1 PE=1 SV=1
Length = 411

Score = 31.2 bits (69), Expect = 4.0
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Frame = -2

Query: 460 PLLLVMLLQTVGDFVPFPFRGNAWPSS*TCCIE*C---SPSHRHSS-LGHPFQ-----KV 308
PL ML G++VP P N + S + E S +H SS L HP Q +
Sbjct: 260 PLTFAMLAD--GNYVPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHPIQLSNYFTL 317

Query: 307 PITAEEQGTMCVCASACACDGCV 239
P + + C C C C GC+
Sbjct: 318 PSSCAQADAACQCGDNCECLGCL 340


>sp|Q40410|MT2_NICPL Metallothionein-like protein type 2
OS=Nicotiana plumbaginifolia PE=3 SV=1
Length = 74

Score = 30.8 bits (68), Expect = 5.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2

Query: 319 FQKVPITAEEQGTMCVCASACACDGCVC 236
F+++ A E G C C S C CD C C
Sbjct: 47 FEELGEKAAEGGNGCKCGSNCTCDPCNC 74


>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23
OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2
Length = 859

Score = 30.4 bits (67), Expect = 6.9
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1

Query: 466 CRYQRYHHYQYILLPC-YTCHLKLCGEGLPPTSSQFYRRSL 585
CR + H Y LL C + C L G+P SS YRRSL
Sbjct: 189 CRQEDAHEYMINLLECMHKCSLP---SGVPSESSDAYRRSL 226


>sp|Q8MKE4|MT3_SHEEP Metallothionein-3 OS=Ovis aries GN=MT3 PE=3
SV=1
Length = 65

Score = 30.4 bits (67), Expect = 6.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -2

Query: 286 GTMCVCASACACDGCVC*SA 227
G C C+ +C C+GC C S+
Sbjct: 11 GGSCTCSDSCKCEGCTCASS 30


tr_hit_id A8Q8Z6
Definition tr|A8Q8Z6|A8Q8Z6_BRUMA T-cell receptor beta chain ANA 11, putative OS=Brugia malayi
Align length 38
Score (bit) 30.8
E-value 0.89
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955183|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_G16, 5'
(590 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8Q8Z6|A8Q8Z6_BRUMA T-cell receptor beta chain ANA 11, putati... 31 0.89
tr|B4N8T4|B4N8T4_DROWI GK10970 OS=Drosophila willistoni GN=GK109... 35 2.4
tr|A9US17|A9US17_MONBE Predicted protein OS=Monosiga brevicollis... 32 3.3
tr|B1VSX3|B1VSX3_STRGG Putative uncharacterized protein OS=Strep... 35 4.1
tr|A7CYE9|A7CYE9_9BACT Putative uncharacterized protein OS=Opitu... 34 5.4
tr|Q4TI57|Q4TI57_TETNG Chromosome undetermined SCAF2389, whole g... 33 9.2
tr|Q4RLG7|Q4RLG7_TETNG Chromosome undetermined SCAF15021, whole ... 33 9.2
tr|B5DMZ3|B5DMZ3_DROPS GA26409 OS=Drosophila pseudoobscura pseud... 33 9.2

>tr|A8Q8Z6|A8Q8Z6_BRUMA T-cell receptor beta chain ANA 11, putative
OS=Brugia malayi GN=Bm1_46665 PE=4 SV=1
Length = 130

Score = 30.8 bits (68), Expect(2) = 0.89
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3

Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVP 287
THTH HT + T HTH +H H HTH +P
Sbjct: 32 THTHTHTLHTHTHT-------HTH-THTHTHTHTHNMP 61



Score = 25.4 bits (54), Expect(2) = 0.89
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2

Query: 155 QTTRQHHTHSCTHT 196
QT RQ HTH+ THT
Sbjct: 7 QTDRQTHTHTHTHT 20


>tr|B4N8T4|B4N8T4_DROWI GK10970 OS=Drosophila willistoni GN=GK10970
PE=4 SV=1
Length = 685

Score = 35.4 bits (80), Expect = 2.4
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = +3

Query: 156 RPQGSTTHTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTH 278
RP H HAHT + HTHP HAH L H H
Sbjct: 76 RPNHGHGHAHAHTHAHQLAA-------HTHPVHAHVLPHPH 109


>tr|A9US17|A9US17_MONBE Predicted protein OS=Monosiga brevicollis
GN=22773 PE=4 SV=1
Length = 650

Score = 32.3 bits (72), Expect(2) = 3.3
Identities = 19/62 (30%), Positives = 27/62 (43%)
Frame = -2

Query: 358 CSPSHRHSSLGHPFQKVPITAEEQGTMCVCASACACDGCVC*SASS*IVHTGSLGVCA*V 179
C+P H+ P ++ +TA +CVC C C CVC + + VC V
Sbjct: 345 CAPLPEHAEGDGPAPELILTATLGKGVCVCVCVCVC-VCVCVCVCVCVCVCVCVCVCVCV 403

Query: 178 CV 173
CV
Sbjct: 404 CV 405



Score = 21.6 bits (44), Expect(2) = 3.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3

Query: 195 VCVHECVWCCLVVC 154
VCV CV C+ VC
Sbjct: 397 VCVCVCVCVCVCVC 410


>tr|B1VSX3|B1VSX3_STRGG Putative uncharacterized protein
OS=Streptomyces griseus subsp. griseus (strain JCM 4626
/ NBRC 13350) GN=SGR_848 PE=4 SV=1
Length = 348

Score = 34.7 bits (78), Expect = 4.1
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3

Query: 159 PQGSTTHTHAHTPNDPVCTI*LEAL*HTH-PSHAHALAHTH 278
P G+ TH H H P D + HTH P AH AHTH
Sbjct: 274 PGGTHTHAHTHGPGDTHTHV------HTHGPGDAHTHAHTH 308


>tr|A7CYE9|A7CYE9_9BACT Putative uncharacterized protein
OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_0954 PE=4
SV=1
Length = 206

Score = 34.3 bits (77), Expect = 5.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2

Query: 284 PLFFSSNGYFL-KWVPKRAMAMRRRASFNAASLTRRPSVSPERKRDEIANSLQQHHQQQR 460
P F+SSN + KW PK R + TR P V +R + +++ QH
Sbjct: 121 PCFYSSNVSIVPKWGPKNGKTYTRPTLITDENATRLPVVFDQRANQDTTSNVNQHRPSDT 180

Query: 461 TPVG 472
P G
Sbjct: 181 QPGG 184


>tr|Q4TI57|Q4TI57_TETNG Chromosome undetermined SCAF2389, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00000122001 PE=4 SV=1
Length = 298

Score = 33.5 bits (75), Expect = 9.2
Identities = 21/52 (40%), Positives = 22/52 (42%)
Frame = +3

Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVPCSSAVMGTF*NGCP 329
THTH HT HTH +H HA HTH P S T GCP
Sbjct: 184 THTHTHT--------------HTH-AHRHAYTHTHTPPGSRCSTPT---GCP 217


>tr|Q4RLG7|Q4RLG7_TETNG Chromosome undetermined SCAF15021, whole
genome shotgun sequence. (Fragment) OS=Tetraodon
nigroviridis GN=GSTENG00032496001 PE=4 SV=1
Length = 610

Score = 33.5 bits (75), Expect = 9.2
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3

Query: 156 RPQGSTTHTHAHTPNDPVCTI*LEAL*HTHP-SHAHALAHTHMVP 287
RP+ +T HTH HT HTH +H H HTH +P
Sbjct: 298 RPRTNTRHTHTHTHTHT----------HTHTHTHTHTHTHTHTLP 332


>tr|B5DMZ3|B5DMZ3_DROPS GA26409 OS=Drosophila pseudoobscura
pseudoobscura GN=GA26409 PE=4 SV=1
Length = 2462

Score = 33.5 bits (75), Expect = 9.2
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3

Query: 159 PQGSTTHTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVPCS 293
P G+ H+H+ + + P + H HP HAHA AH H P S
Sbjct: 1512 PHGAHPHSHSQSHSHPHTHPHSHS--HAHPHHAHAHAHAHSHPHS 1554