DK955183 |
Clone id |
TST39A01NGRL0022_G16 |
Library |
TST39 |
Length |
590 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_G16. 5' end sequence. |
Accession |
DK955183 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TGCGCCTGCACATCACAACTTCACACACGAGGCGAGCACGGCCTCCTCGCATACGCAGAT GAGCGATGGGTTGTAAGCTTTGTACAGCGCAGGTATGTAACGGGTTGTTGAGCTTGGAGG GTGGAAATGGAAATGCTGTTGAGGCTTAGGGTTGCAGACCACAAGGCAGCACCACACACA CTCATGCACACACACCCAACGATCCTGTGTGCACAATTTAGCTTGAAGCACTTTAACACA CACACCCATCACACGCACACGCACTTGCACACACACACATGGTCCCTTGTTCTTCAGCAG TAATGGGTACTTTCTGAAATGGGTGCCCAAGAGAGCTATGGCGATGCGAAGGCGAGCATC ATTCAATGCAGCAAGTCTAACTAGACGGCCAAGCGTTTCCCCTGAACGGAAAAGGGACGA AATCGCCAACAGTTTGCAGCAGCATCACCAGCAGCAGAGGACGCCTGTAGGTACCAACGA TACCACCACTATCAATACATCCTCCTCCCCTGCTACACATGCCACCTCAAGCTCTGTGGA GAAGGGTTACCCCCAACATCCTCACAGTTTTATCGTCGATCCTTACACGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54QR1 |
Definition |
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyostelium discoideum |
Align length |
41 |
Score (bit) |
27.7 |
E-value |
0.75 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955183|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_G16, 5' (590 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyost... 28 0.75 sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Sola... 33 0.81 sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv... 29 1.7 sp|P07548|DFD_DROME Homeotic protein deformed OS=Drosophila mela... 32 1.8 sp|Q9Z876|GLGB_CHLPN 1,4-alpha-glucan-branching enzyme OS=Chlamy... 32 2.4 sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 ... 31 4.0 sp|Q09728|CUF1_SCHPO Metal-binding regulatory protein cuf1 OS=Sc... 31 4.0 sp|Q40410|MT2_NICPL Metallothionein-like protein type 2 OS=Nicot... 31 5.3 sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 O... 30 6.9 sp|Q8MKE4|MT3_SHEEP Metallothionein-3 OS=Ovis aries GN=MT3 PE=3 ... 30 6.9 sp|P55944|MT3_PIG Metallothionein-3 OS=Sus scrofa GN=MT3 PE=2 SV=1 30 6.9 sp|Q2PFZ0|MT3_MACFA Metallothionein-3 OS=Macaca fascicularis GN=... 30 6.9 sp|P25713|MT3_HUMAN Metallothionein-3 OS=Homo sapiens GN=MT3 PE=... 30 6.9 sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3 30 9.0 sp|Q7NYL6|ISPD_CHRVO 2-C-methyl-D-erythritol 4-phosphate cytidyl... 30 9.0
>sp|Q54QR1|LIMA_DICDI LIM domain-containing protein A OS=Dictyostelium discoideum GN=limA PE=2 SV=1 Length = 1183
Score = 27.7 bits (60), Expect(2) = 0.75 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +3
Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVPCSS 296 +H+H+H+ + P H+HP +H+ +H H P ++ Sbjct: 706 SHSHSHSHSHPQHPHSHPQHPHSHPHQSHSHSHAHSQPTTT 746
Score = 24.6 bits (52), Expect(2) = 0.75 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = +1
Query: 142 RLRVADHKAAPHTLMHTHP 198 +L+ DH A P+ L H+HP Sbjct: 685 KLKENDHHAHPNPLEHSHP 703
>sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Solanum lycopersicum PE=3 SV=1 Length = 84
Score = 33.5 bits (75), Expect = 0.81 Identities = 14/26 (53%), Positives = 16/26 (61%) Frame = -2
Query: 298 AEEQGTMCVCASACACDGCVC*SASS 221 A E G C C S+C CD C C SAS+ Sbjct: 56 ATEGGNGCKCGSSCKCDPCNCCSAST 81
>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1 Length = 413
Score = 28.9 bits (63), Expect(2) = 1.7 Identities = 17/47 (36%), Positives = 23/47 (48%) Frame = -2
Query: 313 KVPITAEEQGTMCVCASACACDGCVC*SASS*IVHTGSLGVCA*VCV 173 +V + A +CVCA C C C+C A + L VCA +CV Sbjct: 104 RVCVCARVCARVCVCACVCVC-ACLCVCAC--LCVCACLCVCACLCV 147
Score = 22.3 bits (46), Expect(2) = 1.7 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = -3
Query: 195 VCVHECVWCCLVVC 154 VCV CV CL VC Sbjct: 173 VCVCLCVCVCLCVC 186
Score = 28.5 bits (62), Expect(2) = 3.7 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%) Frame = -2
Query: 313 KVPITAEEQGTMCVCASACACDG-CVC*SASS*IVHTGSLGVCA*VCV 173 +V + A +CVCA C C CVC + VCA VCV Sbjct: 76 RVSVCARVCARVCVCARVCVCARVCVCARVCVCARVCARVCVCACVCV 123
Score = 27.7 bits (60), Expect(2) = 3.7 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = -2
Query: 280 MCVCASACACDGCVC*SASS*IVHTGSLGVCA*VCV 173 +CVCA C C C+C A + L VCA +CV Sbjct: 139 LCVCACLCVC-ACLCVCAC--LCVCACLCVCACLCV 171
Score = 22.3 bits (46), Expect(2) = 3.7 Identities = 9/14 (64%), Positives = 9/14 (64%) Frame = -3
Query: 195 VCVHECVWCCLVVC 154 VCV CV CL VC Sbjct: 179 VCVCLCVCVCLCVC 192
Score = 21.6 bits (44), Expect(2) = 3.7 Identities = 8/14 (57%), Positives = 8/14 (57%) Frame = -3
Query: 195 VCVHECVWCCLVVC 154 VC CV CL VC Sbjct: 117 VCACVCVCACLCVC 130
>sp|P07548|DFD_DROME Homeotic protein deformed OS=Drosophila melanogaster GN=Dfd PE=1 SV=2 Length = 586
Score = 32.3 bits (72), Expect = 1.8 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%) Frame = +3
Query: 165 GSTTHTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVP---CSSAVMG 308 G T H H+ P D V + + H H H+H+ +HTH +P +SA+ G Sbjct: 72 GMTGHPHSMHPADMVS----DYMAHHHNPHSHSHSHTHSLPHHHSNSAISG 118
>sp|Q9Z876|GLGB_CHLPN 1,4-alpha-glucan-branching enzyme OS=Chlamydia pneumoniae GN=glgB PE=3 SV=1 Length = 720
Score = 32.0 bits (71), Expect = 2.4 Identities = 14/37 (37%), Positives = 21/37 (56%) Frame = +3
Query: 327 PRELWRCEGEHHSMQQV*LDGQAFPLNGKGTKSPTVC 437 P + RCEG H + D ++F +GKG ++P VC Sbjct: 658 PSYVLRCEGVKHCELLLNTDDESFGGSGKGNRAPVVC 694
>sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 OS=Homo sapiens PE=2 SV=2 Length = 223
Score = 31.2 bits (69), Expect = 4.0 Identities = 18/35 (51%), Positives = 21/35 (60%) Frame = +3
Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTH 278 T TH HTP+ + T L L H H +HAH AHTH Sbjct: 94 TGTHVHTPHTQMHTRIL-TLSHMH-THAHTHAHTH 126
>sp|Q09728|CUF1_SCHPO Metal-binding regulatory protein cuf1 OS=Schizosaccharomyces pombe GN=cuf1 PE=1 SV=1 Length = 411
Score = 31.2 bits (69), Expect = 4.0 Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 9/83 (10%) Frame = -2
Query: 460 PLLLVMLLQTVGDFVPFPFRGNAWPSS*TCCIE*C---SPSHRHSS-LGHPFQ-----KV 308 PL ML G++VP P N + S + E S +H SS L HP Q + Sbjct: 260 PLTFAMLAD--GNYVPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHPIQLSNYFTL 317
Query: 307 PITAEEQGTMCVCASACACDGCV 239 P + + C C C C GC+ Sbjct: 318 PSSCAQADAACQCGDNCECLGCL 340
>sp|Q40410|MT2_NICPL Metallothionein-like protein type 2 OS=Nicotiana plumbaginifolia PE=3 SV=1 Length = 74
Score = 30.8 bits (68), Expect = 5.3 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2
Query: 319 FQKVPITAEEQGTMCVCASACACDGCVC 236 F+++ A E G C C S C CD C C Sbjct: 47 FEELGEKAAEGGNGCKCGSNCTCDPCNC 74
>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana GN=UBP23 PE=2 SV=2 Length = 859
Score = 30.4 bits (67), Expect = 6.9 Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Frame = +1
Query: 466 CRYQRYHHYQYILLPC-YTCHLKLCGEGLPPTSSQFYRRSL 585 CR + H Y LL C + C L G+P SS YRRSL Sbjct: 189 CRQEDAHEYMINLLECMHKCSLP---SGVPSESSDAYRRSL 226
>sp|Q8MKE4|MT3_SHEEP Metallothionein-3 OS=Ovis aries GN=MT3 PE=3 SV=1 Length = 65
Score = 30.4 bits (67), Expect = 6.9 Identities = 9/20 (45%), Positives = 13/20 (65%) Frame = -2
Query: 286 GTMCVCASACACDGCVC*SA 227 G C C+ +C C+GC C S+ Sbjct: 11 GGSCTCSDSCKCEGCTCASS 30
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8Q8Z6 |
Definition |
tr|A8Q8Z6|A8Q8Z6_BRUMA T-cell receptor beta chain ANA 11, putative OS=Brugia malayi |
Align length |
38 |
Score (bit) |
30.8 |
E-value |
0.89 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955183|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_G16, 5' (590 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8Q8Z6|A8Q8Z6_BRUMA T-cell receptor beta chain ANA 11, putati... 31 0.89 tr|B4N8T4|B4N8T4_DROWI GK10970 OS=Drosophila willistoni GN=GK109... 35 2.4 tr|A9US17|A9US17_MONBE Predicted protein OS=Monosiga brevicollis... 32 3.3 tr|B1VSX3|B1VSX3_STRGG Putative uncharacterized protein OS=Strep... 35 4.1 tr|A7CYE9|A7CYE9_9BACT Putative uncharacterized protein OS=Opitu... 34 5.4 tr|Q4TI57|Q4TI57_TETNG Chromosome undetermined SCAF2389, whole g... 33 9.2 tr|Q4RLG7|Q4RLG7_TETNG Chromosome undetermined SCAF15021, whole ... 33 9.2 tr|B5DMZ3|B5DMZ3_DROPS GA26409 OS=Drosophila pseudoobscura pseud... 33 9.2
>tr|A8Q8Z6|A8Q8Z6_BRUMA T-cell receptor beta chain ANA 11, putative OS=Brugia malayi GN=Bm1_46665 PE=4 SV=1 Length = 130
Score = 30.8 bits (68), Expect(2) = 0.89 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3
Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVP 287 THTH HT + T HTH +H H HTH +P Sbjct: 32 THTHTHTLHTHTHT-------HTH-THTHTHTHTHNMP 61
Score = 25.4 bits (54), Expect(2) = 0.89 Identities = 10/14 (71%), Positives = 11/14 (78%) Frame = +2
Query: 155 QTTRQHHTHSCTHT 196 QT RQ HTH+ THT Sbjct: 7 QTDRQTHTHTHTHT 20
>tr|B4N8T4|B4N8T4_DROWI GK10970 OS=Drosophila willistoni GN=GK10970 PE=4 SV=1 Length = 685
Score = 35.4 bits (80), Expect = 2.4 Identities = 17/41 (41%), Positives = 18/41 (43%) Frame = +3
Query: 156 RPQGSTTHTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTH 278 RP H HAHT + HTHP HAH L H H Sbjct: 76 RPNHGHGHAHAHTHAHQLAA-------HTHPVHAHVLPHPH 109
>tr|A9US17|A9US17_MONBE Predicted protein OS=Monosiga brevicollis GN=22773 PE=4 SV=1 Length = 650
Score = 32.3 bits (72), Expect(2) = 3.3 Identities = 19/62 (30%), Positives = 27/62 (43%) Frame = -2
Query: 358 CSPSHRHSSLGHPFQKVPITAEEQGTMCVCASACACDGCVC*SASS*IVHTGSLGVCA*V 179 C+P H+ P ++ +TA +CVC C C CVC + + VC V Sbjct: 345 CAPLPEHAEGDGPAPELILTATLGKGVCVCVCVCVC-VCVCVCVCVCVCVCVCVCVCVCV 403
Query: 178 CV 173 CV Sbjct: 404 CV 405
Score = 21.6 bits (44), Expect(2) = 3.3 Identities = 8/14 (57%), Positives = 9/14 (64%) Frame = -3
Query: 195 VCVHECVWCCLVVC 154 VCV CV C+ VC Sbjct: 397 VCVCVCVCVCVCVC 410
>tr|B1VSX3|B1VSX3_STRGG Putative uncharacterized protein OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=SGR_848 PE=4 SV=1 Length = 348
Score = 34.7 bits (78), Expect = 4.1 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%) Frame = +3
Query: 159 PQGSTTHTHAHTPNDPVCTI*LEAL*HTH-PSHAHALAHTH 278 P G+ TH H H P D + HTH P AH AHTH Sbjct: 274 PGGTHTHAHTHGPGDTHTHV------HTHGPGDAHTHAHTH 308
>tr|A7CYE9|A7CYE9_9BACT Putative uncharacterized protein OS=Opitutaceae bacterium TAV2 GN=ObacDRAFT_0954 PE=4 SV=1 Length = 206
Score = 34.3 bits (77), Expect = 5.4 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Frame = +2
Query: 284 PLFFSSNGYFL-KWVPKRAMAMRRRASFNAASLTRRPSVSPERKRDEIANSLQQHHQQQR 460 P F+SSN + KW PK R + TR P V +R + +++ QH Sbjct: 121 PCFYSSNVSIVPKWGPKNGKTYTRPTLITDENATRLPVVFDQRANQDTTSNVNQHRPSDT 180
Query: 461 TPVG 472 P G Sbjct: 181 QPGG 184
>tr|Q4TI57|Q4TI57_TETNG Chromosome undetermined SCAF2389, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00000122001 PE=4 SV=1 Length = 298
Score = 33.5 bits (75), Expect = 9.2 Identities = 21/52 (40%), Positives = 22/52 (42%) Frame = +3
Query: 174 THTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVPCSSAVMGTF*NGCP 329 THTH HT HTH +H HA HTH P S T GCP Sbjct: 184 THTHTHT--------------HTH-AHRHAYTHTHTPPGSRCSTPT---GCP 217
>tr|Q4RLG7|Q4RLG7_TETNG Chromosome undetermined SCAF15021, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00032496001 PE=4 SV=1 Length = 610
Score = 33.5 bits (75), Expect = 9.2 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +3
Query: 156 RPQGSTTHTHAHTPNDPVCTI*LEAL*HTHP-SHAHALAHTHMVP 287 RP+ +T HTH HT HTH +H H HTH +P Sbjct: 298 RPRTNTRHTHTHTHTHT----------HTHTHTHTHTHTHTHTLP 332
>tr|B5DMZ3|B5DMZ3_DROPS GA26409 OS=Drosophila pseudoobscura pseudoobscura GN=GA26409 PE=4 SV=1 Length = 2462
Score = 33.5 bits (75), Expect = 9.2 Identities = 17/45 (37%), Positives = 23/45 (51%) Frame = +3
Query: 159 PQGSTTHTHAHTPNDPVCTI*LEAL*HTHPSHAHALAHTHMVPCS 293 P G+ H+H+ + + P + H HP HAHA AH H P S Sbjct: 1512 PHGAHPHSHSQSHSHPHTHPHSHS--HAHPHHAHAHAHAHSHPHS 1554
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