DK955189 |
Clone id |
TST39A01NGRL0022_G23 |
Library |
TST39 |
Length |
569 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_G23. 5' end sequence. |
Accession |
DK955189 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
ATCCCAATTTTGTAAGGTCAGTTTCATAAAAGCAAACGCAGTGCACCACCCGTACTCTCT CTCTCTCTCTCTCTCTCTCTCTCTGTCTTCCATGCATGCGTTGTAGTTGTAAGCGATGGC GAGCTTAGGCTTGTGTGAGCTGGGGCGCACAGGCCTTCGAGTGAGCAAGTTGGCCTTCGG GGCGTCCCCGCTAGGCAATGTTTTCGGCGATGTCAAGGAGGAGGACGCCATCGCTTCTGT TCATGAGGCTGCCCGCCTGGGCATCAACTTCTTCGACACTTCCCCGTATTATGGTGGCAC ACTAGCAGAGCAGGTGCTTGGTAAAGCGCTCAAAACCCTCCCTTTGCCTCGAGATAGCTA CATAGTGTCATCAAAATGTGGGCGCTATATTGATGGATTCGATTTCAGTGCGACGCGTGT GACCCAAAGTGTTGATGAAAGTTTGGCGCGTTTGAACCTTAGCTACATTGACATCATGCA ATGCCACGATATCGAGTTTGGATCACTCGACCAGATAATCACAGAAACTATCCCAGCTCT TTTGAAGCTTAAAGAAAGTGGGGAAAATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P77735 |
Definition |
sp|P77735|YAJO_ECOLI Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) |
Align length |
149 |
Score (bit) |
72.8 |
E-value |
1.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955189|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_G23, 5' (569 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P77735|YAJO_ECOLI Uncharacterized oxidoreductase yajO OS=Esch... 73 1e-12 sp|Q40648|KCAB_ORYSJ Probable voltage-gated potassium channel su... 72 2e-12 sp|Q04212|ARA2_YEAST D-arabinose 1-dehydrogenase OS=Saccharomyce... 72 3e-12 sp|Q76KC2|PLD_MICLT Pyridoxal 4-dehydrogenase OS=Microbacterium ... 69 1e-11 sp|P54569|YQKF_BACSU Uncharacterized oxidoreductase yqkF OS=Baci... 69 2e-11 sp|P46336|IOLS_BACSU Protein iolS OS=Bacillus subtilis GN=iolS P... 67 5e-11 sp|P77256|YDJG_ECOLI Uncharacterized oxidoreductase ydjG OS=Esch... 67 6e-11 sp|P46905|YCCK_BACSU Uncharacterized oxidoreductase yccK OS=Baci... 64 7e-10 sp|O59826|KCAB_SCHPO Putative voltage-gated potassium channel su... 61 3e-09 sp|Q63494|KCAB3_RAT Voltage-gated potassium channel subunit beta... 60 6e-09 sp|O43448|KCAB3_HUMAN Voltage-gated potassium channel subunit be... 60 6e-09 sp|Q9PTM4|KCAB3_XENLA Voltage-gated potassium channel subunit be... 59 1e-08 sp|P80874|GS69_BACSU General stress protein 69 OS=Bacillus subti... 59 2e-08 sp|O05408|YRPG_BACSU Uncharacterized oxidoreductase yrpG OS=Baci... 56 1e-07 sp|Q9PWR1|KCAB1_CHICK Voltage-gated potassium channel subunit be... 54 4e-07 sp|Q9P7U2|YI7E_SCHPO Putative aryl-alcohol dehydrogenase C977.14... 54 7e-07 sp|P63144|KCAB1_RAT Voltage-gated potassium channel subunit beta... 53 1e-06 sp|Q9XT31|KCAB1_RABIT Voltage-gated potassium channel subunit be... 53 1e-06 sp|Q28528|KCAB1_MUSPU Voltage-gated potassium channel subunit be... 53 1e-06 sp|P63143|KCAB1_MOUSE Voltage-gated potassium channel subunit be... 53 1e-06 sp|Q14722|KCAB1_HUMAN Voltage-gated potassium channel subunit be... 53 1e-06 sp|Q4PJK1|KCAB1_BOVIN Voltage-gated potassium channel subunit be... 53 1e-06 sp|Q9PTM5|KCAB2_XENLA Voltage-gated potassium channel subunit be... 52 2e-06 sp|Q13303|KCAB2_HUMAN Voltage-gated potassium channel subunit be... 52 2e-06 sp|Q27955|KCAB2_BOVIN Voltage-gated potassium channel subunit be... 52 2e-06 sp|P62483|KCAB2_RAT Voltage-gated potassium channel subunit beta... 52 2e-06 sp|P62482|KCAB2_MOUSE Voltage-gated potassium channel subunit be... 52 2e-06 sp|P40691|A115_TOBAC Auxin-induced protein PCNT115 OS=Nicotiana ... 52 3e-06 sp|Q46851|YGHZ_ECOLI Uncharacterized protein yghZ OS=Escherichia... 51 4e-06 sp|Q8X529|YGHZ_ECO57 Uncharacterized protein yghZ OS=Escherichia... 51 4e-06
>sp|P77735|YAJO_ECOLI Uncharacterized oxidoreductase yajO OS=Escherichia coli (strain K12) GN=yajO PE=3 SV=2 Length = 324
Score = 72.8 bits (177), Expect = 1e-12 Identities = 48/149 (32%), Positives = 81/149 (54%), Gaps = 7/149 (4%) Frame = +2
Query: 140 LGRTGLRVSKLA-----FGASPLGNVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTL 304 LG+T LRVS+L FG GN + EE + + A GINFFDT+ Y Sbjct: 6 LGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPIIKRALEGGINFFDTANSYSDGS 65
Query: 305 AEQVLGKALKTLPLPRDSYIVSSKCGRYIDGF--DFSATRVTQSVDESLARLNLSYIDIM 478 +E+++G+AL+ R+ +V++K + S ++ +S+D+SL RL + Y+DI+ Sbjct: 66 SEEIVGRALRDF-ARREDVVVATKVFHRVGDLPEGLSRAQILRSIDDSLRRLGMDYVDIL 124
Query: 479 QCHDIEFGSLDQIITETIPALLKLKESGE 565 Q H ++ + I ET+ AL + ++G+ Sbjct: 125 QIHRWDYNT---PIEETLEALNDVVKAGK 150
>sp|Q40648|KCAB_ORYSJ Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2 Length = 328
Score = 72.0 bits (175), Expect = 2e-12 Identities = 44/120 (36%), Positives = 69/120 (57%), Gaps = 4/120 (3%) Frame = +2
Query: 140 LGRTGLRVSKLAFGA-SPLGNVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTLAEQV 316 LGR+GLRVS+L++GA GN DVKE A+ A G+NFFD + Y AE++ Sbjct: 6 LGRSGLRVSQLSYGAWVTFGNQL-DVKEAKALLQACRDA--GVNFFDNAEVYANGRAEEI 62
Query: 317 LGKALKTLPLPRDSYIVSSKC---GRYIDGFDFSATRVTQSVDESLARLNLSYIDIMQCH 487 +G+A++ L R +VS+K G+ + S + + + SL RL++ Y+D++ CH Sbjct: 63 MGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCH 122
>sp|Q04212|ARA2_YEAST D-arabinose 1-dehydrogenase OS=Saccharomyces cerevisiae GN=ARA2 PE=1 SV=1 Length = 335
Score = 71.6 bits (174), Expect = 3e-12 Identities = 50/138 (36%), Positives = 72/138 (52%), Gaps = 4/138 (2%) Frame = +2
Query: 161 VSKLAFGASPLGNVFGDVKEEDAIASVHEAA-RLGINFFDTSPYYGGTLAEQVLGKALKT 337 VS L G + L + D E + + + A GIN DTSPYYG + E + G+AL Sbjct: 14 VSPLVLGGAILNQQYTDEPESIPLEDIIKYAFSHGINAIDTSPYYGPS--EVLYGRALSN 71
Query: 338 L--PLPRDSYIVSSKCGRY-IDGFDFSATRVTQSVDESLARLNLSYIDIMQCHDIEFGSL 508 L PRD+Y + +K GR + F++S V SV S RL+ +Y+D++ HD+EF Sbjct: 72 LRNEFPRDTYFICTKVGRIGAEEFNYSRDFVRFSVHRSCERLHTTYLDLVYLHDVEFVKF 131
Query: 509 DQIITETIPALLKLKESG 562 I+ E + L LK G Sbjct: 132 PDIL-EALKELRTLKNKG 148
>sp|Q76KC2|PLD_MICLT Pyridoxal 4-dehydrogenase OS=Microbacterium luteolum GN=pld1 PE=1 SV=3 Length = 342
Score = 69.3 bits (168), Expect = 1e-11 Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 29/147 (19%) Frame = +2
Query: 140 LGRTGLRVSKLAFGASPLGNVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTLAEQVL 319 LGRTGL V+ L G +PLG ++ V DA A + GI +FD++P YG E +L Sbjct: 11 LGRTGLTVTALGLGTAPLGGLYAPVSRADADALLEAGWDSGIRYFDSAPMYGYGRCEHLL 70
Query: 320 GKALKTLPLPRDSYIVSSKCGR-----------------------------YIDGFDFSA 412 G L+ P + ++S+K GR + + FD+S Sbjct: 71 GDMLREKP---ERAVISTKVGRLMTNERAGRTLPPAPPKNPLDSGWHNGLNFREVFDYSY 127
Query: 413 TRVTQSVDESLARLNLSYIDIMQCHDI 493 V +S D+S RL ID++ HDI Sbjct: 128 DGVMRSFDDSQQRLGFPEIDLLYVHDI 154
>sp|P54569|YQKF_BACSU Uncharacterized oxidoreductase yqkF OS=Bacillus subtilis GN=yqkF PE=3 SV=1 Length = 306
Score = 68.9 bits (167), Expect = 2e-11 Identities = 48/148 (32%), Positives = 80/148 (54%), Gaps = 6/148 (4%) Frame = +2
Query: 137 ELGRTGLRVSKLAFGASPLGNVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTLAEQV 316 +LG + L +S++ G LG ++ A++ + EA LGIN+ DT+ Y E++ Sbjct: 5 KLGTSDLDISEVGLGCMSLGT-----EKNKALSILDEAIELGINYLDTADLYDRGRNEEI 59
Query: 317 LGKALKTLPLPRDSYIVSSKCG-RYIDG-----FDFSATRVTQSVDESLARLNLSYIDIM 478 +G A++ R I+++K G R+ DG +D S + ++V +SL RL YID+ Sbjct: 60 VGDAIQN---RRHDIILATKAGNRWDDGSEGWYWDPSKAYIKEAVKKSLTRLKTDYIDLY 116
Query: 479 QCHDIEFGSLDQIITETIPALLKLKESG 562 Q H G+++ I ETI A +LK+ G Sbjct: 117 QLHG---GTIEDNIDETIEAFEELKQEG 141
>sp|P46336|IOLS_BACSU Protein iolS OS=Bacillus subtilis GN=iolS PE=1 SV=1 Length = 310
Score = 67.4 bits (163), Expect = 5e-11 Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 6/149 (4%) Frame = +2
Query: 137 ELGRTGLRVSKLAFGASPLG--NVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTLAE 310 +LG++ L+V + G + +G N++ ++ EE V EA R G+ DT+ YG +E Sbjct: 5 KLGKSDLQVFPIGLGTNAVGGHNLYPNLNEETGKELVREAIRNGVTMLDTAYIYGIGRSE 64
Query: 311 QVLGKALKTLPLPRDSYIVSSKCGRYIDGFDF----SATRVTQSVDESLARLNLSYIDIM 478 +++G+ L+ R+ ++++K G DF S + +SVDESL RLN YID+ Sbjct: 65 ELIGEVLREFN--REDVVIATKAAHRKQGNDFVFDNSPDFLKKSVDESLKRLNTDYIDLF 122
Query: 479 QCHDIEFGSLDQIITETIPALLKLKESGE 565 H F E + AL ++K++G+ Sbjct: 123 YIH---FPDEHTPKDEAVNALNEMKKAGK 148
>sp|P77256|YDJG_ECOLI Uncharacterized oxidoreductase ydjG OS=Escherichia coli (strain K12) GN=ydjG PE=3 SV=1 Length = 326
Score = 67.0 bits (162), Expect = 6e-11 Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 19/161 (11%) Frame = +2
Query: 140 LGRTGLRVSKL-----AFGASPLGNVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTL 304 LG T + +S++ A G P N GD+ + I ++ EA R GIN DT+P Y Sbjct: 6 LGTTDITLSRMGLGTWAIGGGPAWN--GDLDRQICIDTILEAHRCGINLIDTAPGYNFGN 63
Query: 305 AEQVLGKALKTLPLPRDSYIVSSKCGRYIDG--------------FDFSATRVTQSVDES 442 +E ++G+ALK LPR+ +V +KCG + + S + + V S Sbjct: 64 SEVIVGQALK--KLPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREEVAAS 121
Query: 443 LARLNLSYIDIMQCHDIEFGSLDQIITETIPALLKLKESGE 565 L RL + YIDI H I ET+ L +LK G+ Sbjct: 122 LQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSEGK 162
>sp|P46905|YCCK_BACSU Uncharacterized oxidoreductase yccK OS=Bacillus subtilis GN=yccK PE=3 SV=2 Length = 310
Score = 63.5 bits (153), Expect = 7e-10 Identities = 43/147 (29%), Positives = 75/147 (51%), Gaps = 5/147 (3%) Frame = +2
Query: 140 LGRTGLRVSKLAFGASPLG--NVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTLAEQ 313 LG+T L+V ++ FGA+ +G N+F ++ +E V A G+NF DT+ YG +E+ Sbjct: 7 LGKTKLKVKRIGFGANAVGGHNLFPNLNDETGKDLVRTALDGGVNFIDTAFIYGLGRSEE 66
Query: 314 VLGKALKTLPLPRDSYIVSSKCGRYIDG---FDFSATRVTQSVDESLARLNLSYIDIMQC 484 ++G+ ++ + + I + + +DG D S + V++SL RL YID+ Sbjct: 67 LIGEVVQERGVRNELIIATKGAHKEVDGSIELDNSREFLRSEVEKSLKRLKTDYIDLYYV 126
Query: 485 HDIEFGSLDQIITETIPALLKLKESGE 565 H F + E L +LK+ G+ Sbjct: 127 H---FPDGKTPLAEVAGTLKELKDEGK 150
>sp|O59826|KCAB_SCHPO Putative voltage-gated potassium channel subunit beta OS=Schizosaccharomyces pombe GN=SPCC965.06 PE=2 SV=1 Length = 344
Score = 61.2 bits (147), Expect = 3e-09 Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 6/122 (4%) Frame = +2
Query: 140 LGRTGLRVSKLAFGA-SPLGNVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTLAEQV 316 LGR+GL+VS + G GN DV E + +A LGIN FDT+ Y +E V Sbjct: 18 LGRSGLKVSAFSLGGWLTYGNEGYDV--EHTKNCLKQAWDLGINTFDTAEIYSNGNSETV 75
Query: 317 LGKALKTLPLPRDSYIVSSKC-----GRYIDGFDFSATRVTQSVDESLARLNLSYIDIMQ 481 +GKA+K L R Y++++K + + S + + ++ SL RL L Y+D++ Sbjct: 76 MGKAIKELGWDRSEYVITTKVFFGAGTKLPNTTGLSRKHIIEGLNASLKRLGLPYVDVIM 135
Query: 482 CH 487 H Sbjct: 136 AH 137
>sp|Q63494|KCAB3_RAT Voltage-gated potassium channel subunit beta-3 OS=Rattus norvegicus GN=Kcnab3 PE=2 SV=1 Length = 404
Score = 60.5 bits (145), Expect = 6e-09 Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 4/117 (3%) Frame = +2
Query: 140 LGRTGLRVSKLAFGA-SPLGNVFGDVKEEDAIASVHEAARLGINFFDTSPYYGGTLAEQV 316 LG++GLRVS L G G+ D ED + +E G+N FDT+ Y AE+ Sbjct: 83 LGKSGLRVSCLGLGTWVTFGSQISDETAEDLLTVAYEH---GVNLFDTAEVYAAGKAERT 139
Query: 317 LGKALKTLPLPRDSYIVSSKC---GRYIDGFDFSATRVTQSVDESLARLNLSYIDIM 478 LG LK+ R SY++++K G+ S + + + SL RL L Y+DI+ Sbjct: 140 LGNILKSKGWRRSSYVITTKIFWGGQAETERGLSRKHIIEGLQGSLDRLQLEYVDIV 196
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TD50 |
Definition |
tr|A9TD50|A9TD50_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
146 |
Score (bit) |
238.0 |
E-value |
1.0e-61 |
Report |
|