| DK955190 |
| Clone id |
TST39A01NGRL0022_G24 |
| Library |
TST39 |
| Length |
549 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_G24. 5' end sequence. |
| Accession |
DK955190 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL605Contig1 |
| Sequence |
CTCTCTCTCTGTGTGTGTGTGTGTGTCTCCGTCTCAAGCTCAAGTTTCAGCAGATTCAAG
GTTTGTGGGTTTTCAATGGAGGAGCAGAAAATTGAGAAGAAGCAGGAGGAAATCCCTAAA
GTAGTGGAGGATGTGAAGGAAGAGGTAGTGGCAGCAGCTGCTGCAGAGGGAAAAGAAGAA
GCGAAGAAGCCTATCAATGAAGAAGAAGCGAAGAAGGTAGAGGAAGAGGCGGAAACGGAG
GAGAAAGCCCCCCCCAGTGAGTCCCTTACAGAAACCCCCTCTTTCAAAGAGGAGAGCTAT
AGCGTTGGGGACTTAACCGAGGTAGAGAAGAAGGCCCTGGAAGCCTTCAGACTGAAAGTG
GAGGACGCCATTAAGAGCAAGAGCATTCTTAAGAAGCCTAAGAAGAAAGTGGAAGAGAAG
GTGGTTGCGGTTGCAGAATCCCCTGCCTCTGCTGAAGCTGAGACCGAGACACCTGTTTCA
GTCGAAACAGAGTCCCGTGCAATTGAAGAAGTAGAGGCTGAAGAGACTGAAGTTCCTGCT
GTCACTGAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q94C59 |
| Definition |
sp|Q94C59|PATL4_ARATH Patellin-4 OS=Arabidopsis thaliana |
| Align length |
36 |
| Score (bit) |
33.5 |
| E-value |
0.7 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A7QLX0 |
| Definition |
tr|A7QLX0|A7QLX0_VITVI Chromosome chr18 scaffold_122, whole genome shotgun sequence OS=Vitis vinifera |
| Align length |
36 |
| Score (bit) |
39.7 |
| E-value |
0.11 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955190|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_G24, 5'
(549 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A7QLX0|A7QLX0_VITVI Chromosome chr18 scaffold_122, whole geno... 40 0.11
tr|A5ASS1|A5ASS1_VITVI Putative uncharacterized protein OS=Vitis... 40 0.11
tr|A7PKK5|A7PKK5_VITVI Chromosome chr7 scaffold_20, whole genome... 37 0.90
tr|B6TB19|B6TB19_MAIZE Patellin-5 OS=Zea mays PE=2 SV=1 35 3.4
tr|B8LQX3|B8LQX3_PICSI Putative uncharacterized protein OS=Picea... 33 7.7
tr|B2RRF3|B2RRF3_MOUSE AI848100 protein (MCG22687) OS=Mus muscul... 33 10.0
tr|Q2Q0V7|Q2Q0V7_CUCPE Patellin 1 OS=Cucurbita pepo GN=PATL1 PE=... 33 10.0
tr|Q5H945|Q5H945_HUMAN Chromosome 1 open reading frame 9 (Chromo... 33 10.0
tr|B4DYM4|B4DYM4_HUMAN cDNA FLJ60972 OS=Homo sapiens PE=2 SV=1 33 10.0
>tr|A7QLX0|A7QLX0_VITVI Chromosome chr18 scaffold_122, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00001819001
PE=4 SV=1
Length = 606
Score = 39.7 bits (91), Expect = 0.11
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 259 ESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVED 366
E +TE+ SFKEES VGDL E ++KALE ++ V +
Sbjct: 78 EKMTESVSFKEESNVVGDLPESQRKALEELKVLVRE 113
>tr|A5ASS1|A5ASS1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_013163 PE=4 SV=1
Length = 595
Score = 39.7 bits (91), Expect = 0.11
Identities = 19/36 (52%), Positives = 26/36 (72%)
Frame = +1
Query: 259 ESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVED 366
E +TE+ SFKEES VGDL E ++KALE ++ V +
Sbjct: 78 EKMTESVSFKEESNVVGDLPESQRKALEELKVLVRE 113
>tr|A7PKK5|A7PKK5_VITVI Chromosome chr7 scaffold_20, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019216001
PE=4 SV=1
Length = 452
Score = 36.6 bits (83), Expect = 0.90
Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +1
Query: 259 ESLTETPSFKEESYSVGDLTEVEKKALEAFRL--KVED 366
E + ++ SFKEES V DL E EKKALE + KV+D
Sbjct: 72 EKIPQSDSFKEESTRVSDLPETEKKALEELKQLEKVDD 109
>tr|B6TB19|B6TB19_MAIZE Patellin-5 OS=Zea mays PE=2 SV=1
Length = 520
Score = 34.7 bits (78), Expect = 3.4
Identities = 19/38 (50%), Positives = 23/38 (60%)
Frame = +1
Query: 250 PPSESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVE 363
P E T+ SF+EES + DL E E+KAL R KVE
Sbjct: 18 PAKEVSTKQASFREESNFLDDLKESERKALAELRDKVE 55
>tr|B8LQX3|B8LQX3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 592
Score = 33.5 bits (75), Expect = 7.7
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 280 SFKEESYSVGDLTEVEKKALEAFRLKVED 366
SFKEES V DL E E+KAL+ + ++E+
Sbjct: 74 SFKEESNFVSDLKESERKALQELKCRIEE 102
>tr|B2RRF3|B2RRF3_MOUSE AI848100 protein (MCG22687) OS=Mus musculus
GN=AI848100 PE=2 SV=1
Length = 1254
Score = 33.1 bits (74), Expect = 10.0
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Frame = +1
Query: 250 PPSESLTETPSFKEESYSVG------------DLTEVEKKALEAFRLKVED 366
PPSE +ET S EESY G T+ EK+AL+ R KV+D
Sbjct: 1161 PPSEGSSETSSQSEESYFCGISACTSLCNGQTQKTKTEKRALKRRRSKVQD 1211
>tr|Q2Q0V7|Q2Q0V7_CUCPE Patellin 1 OS=Cucurbita pepo GN=PATL1 PE=2
SV=1
Length = 604
Score = 33.1 bits (74), Expect = 10.0
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +1
Query: 259 ESLTETPSFKEESYSVGDLTEVEKKALEAFRLKVED 366
E ++++ SFKEES VG+L E ++KAL ++ +++
Sbjct: 74 EKISQSVSFKEESNVVGELPESQRKALADLKVLIQE 109
>tr|Q5H945|Q5H945_HUMAN Chromosome 1 open reading frame 9 (Chromosome
1 open reading frame 9, isoform CRA_b) OS=Homo sapiens
GN=C1orf9 PE=4 SV=1
Length = 1406
Score = 33.1 bits (74), Expect = 10.0
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Frame = +1
Query: 250 PPSESLTETPSFKEESYSVG------------DLTEVEKKALEAFRLKVED 366
PPSE +ET S EESY G T+ EK+AL+ R KV+D
Sbjct: 1313 PPSEGSSETSSQSEESYFCGISACTSLCNGQSQKTKTEKRALKRRRSKVQD 1363
>tr|B4DYM4|B4DYM4_HUMAN cDNA FLJ60972 OS=Homo sapiens PE=2 SV=1
Length = 883
Score = 33.1 bits (74), Expect = 10.0
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 12/51 (23%)
Frame = +1
Query: 250 PPSESLTETPSFKEESYSVG------------DLTEVEKKALEAFRLKVED 366
PPSE +ET S EESY G T+ EK+AL+ R KV+D
Sbjct: 790 PPSEGSSETSSQSEESYFCGISACTSLCNGQSQKTKTEKRALKRRRSKVQD 840
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