| DK955208 |
| Clone id |
TST39A01NGRL0022_H18 |
| Library |
TST39 |
| Length |
535 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_H18. 5' end sequence. |
| Accession |
DK955208 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL1302Contig1 |
| Sequence |
GAAAAATCTCGCCAAGAAGAAGCGCCACCATCACCAGTGCGAAGGACCACAGGAGGCCGT CATATTTGTGGGTGGAGCGCCCGCGTCACAGCCACCCATCGCGCCTACGCAGGCACTGCC ACCCACAACACGTACACATGCAAGATCACCCACGACGCCTGAGGGGCGGCCGCAACCCTC GACAGCTATGCAAGAGGATGGAGGGCATCCAATACCCCTCCAACTAAGTACCGCGCAAGC GCAAGGCCGCACGATAATCAACTTTCGCGGCCTGCTCATCGATGTGACACCCTCCTGGCT CAATATTGCGGCTACGCATGAGGGACAGGCAACAGAACAAGAGCTGCAGCAGCATCCACC TTGGCTTCCGATTGTGCGAACTGGGCAGACATCTAATGGCTTCCGAAACTATGAGTGCCC GATCTGCCTTGAAATATTGCAAGCAAGTGACAAGGCGTCCTCCCTGCTCCCTTGCAACCA TGCATTCCACTTGCAATGCATTACCAGTTGGCTTAACCTCAATTCCTCTTGCCCG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q5EAE9 |
| Definition |
sp|Q5EAE9|ATL5C_ARATH RING-H2 finger protein ATL5C OS=Arabidopsis thaliana |
| Align length |
57 |
| Score (bit) |
53.1 |
| E-value |
8.0e-07 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B6TYR6 |
| Definition |
tr|B6TYR6|B6TYR6_MAIZE RING-H2 finger protein ATL2B OS=Zea mays |
| Align length |
60 |
| Score (bit) |
56.2 |
| E-value |
1.0e-06 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955208|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_H18, 5' (535 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6TYR6|B6TYR6_MAIZE RING-H2 finger protein ATL2B OS=Zea mays ... 56 1e-06 tr|A9RZM7|A9RZM7_PHYPA Predicted protein (Fragment) OS=Physcomit... 55 2e-06 tr|A9P156|A9P156_PICSI Putative uncharacterized protein OS=Picea... 55 2e-06 tr|B6SWY2|B6SWY2_MAIZE Protein binding protein OS=Zea mays PE=2 ... 55 3e-06 tr|A8E124|A8E124_SPIOL NEP1-interacting protein OS=Spinacia oler... 55 3e-06 tr|A7PD18|A7PD18_VITVI Chromosome chr17 scaffold_12, whole genom... 54 5e-06 tr|A7NY09|A7NY09_VITVI Chromosome chr6 scaffold_3, whole genome ... 54 5e-06 tr|A5AZN8|A5AZN8_VITVI Putative uncharacterized protein OS=Vitis... 54 5e-06 tr|B8LN43|B8LN43_PICSI Putative uncharacterized protein OS=Picea... 54 7e-06 tr|B6UH48|B6UH48_MAIZE RING-H2 finger protein ATL5H OS=Zea mays ... 54 7e-06 tr|A7QVT3|A7QVT3_VITVI Chromosome chr7 scaffold_192, whole genom... 54 7e-06 tr|A2ZHF8|A2ZHF8_ORYSI Putative uncharacterized protein OS=Oryza... 53 9e-06 tr|Q9SUA5|Q9SUA5_ARATH Putative uncharacterized protein AT4g2658... 53 1e-05 tr|Q6ZJI1|Q6ZJI1_ORYSJ Os08g0550400 protein OS=Oryza sativa subs... 53 1e-05 tr|Q6H6Q0|Q6H6Q0_ORYSJ Putative uncharacterized protein P0475F05... 53 1e-05 tr|Q0WSW1|Q0WSW1_ARATH Putative uncharacterized protein At4g2658... 53 1e-05 tr|A9NPN0|A9NPN0_PICSI Putative uncharacterized protein OS=Picea... 53 1e-05 tr|A2YXW2|A2YXW2_ORYSI Putative uncharacterized protein OS=Oryza... 53 1e-05 tr|Q4FE38|Q4FE38_ARATH At2g42360 OS=Arabidopsis thaliana GN=At2g... 52 1e-05 tr|Q0WT62|Q0WT62_ARATH RING-H2 zinc finger protein OS=Arabidopsi... 52 1e-05 tr|B7GBA9|B7GBA9_PHATR Predicted protein OS=Phaeodactylum tricor... 52 1e-05 tr|A2YXV6|A2YXV6_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05 tr|Q8WZL0|Q8WZL0_NEUCR Related to COP1-interacting protein CIP8 ... 52 1e-05 tr|Q655C7|Q655C7_ORYSJ Ring-H2 zinc finger protein-like OS=Oryza... 52 2e-05 tr|A9NYQ0|A9NYQ0_PICSI Putative uncharacterized protein OS=Picea... 52 2e-05 tr|A7QUA4|A7QUA4_VITVI Chromosome chr2 scaffold_176, whole genom... 52 2e-05 tr|A2WP13|A2WP13_ORYSI Putative uncharacterized protein OS=Oryza... 52 2e-05 tr|Q3V289|Q3V289_MOUSE Putative uncharacterized protein OS=Mus m... 52 3e-05 tr|Q6YWR1|Q6YWR1_ORYSJ Os02g0729900 protein OS=Oryza sativa subs... 52 3e-05 tr|A9PBV7|A9PBV7_POPTR Putative uncharacterized protein OS=Popul... 52 3e-05
>tr|B6TYR6|B6TYR6_MAIZE RING-H2 finger protein ATL2B OS=Zea mays PE=2 SV=1 Length = 223
Score = 56.2 bits (134), Expect = 1e-06 Identities = 28/60 (46%), Positives = 35/60 (58%), Gaps = 3/60 (5%) Frame = +2
Query: 365 LPIVRTGQTSNGFRNYE---CPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 LP+VR + SN + E C +CL+ QA D A SL C H FHL CI WL ++SCP Sbjct: 158 LPVVRFTERSNVDASGELIACSVCLQEFQAGDSARSLPVCRHTFHLPCIDGWLLRHASCP 217
>tr|A9RZM7|A9RZM7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_27893 PE=4 SV=1 Length = 76
Score = 55.1 bits (131), Expect = 2e-06 Identities = 20/44 (45%), Positives = 30/44 (68%) Frame = +2
Query: 404 RNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 R +EC +CLE + +K +L C+H+FHL CI WL+ +S+CP Sbjct: 22 RGFECAVCLEEFELGEKGRTLPKCDHSFHLDCIDMWLHSHSTCP 65
>tr|A9P156|A9P156_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 186
Score = 55.1 bits (131), Expect = 2e-06 Identities = 23/48 (47%), Positives = 30/48 (62%) Frame = +2
Query: 392 SNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 S G N EC +CLEI Q D+ + C+HAFH+QC +WL+ S CP Sbjct: 84 SRGGGNAECAVCLEIFQNGDRCRVIPVCSHAFHVQCADAWLSKCSVCP 131
>tr|B6SWY2|B6SWY2_MAIZE Protein binding protein OS=Zea mays PE=2 SV=1 Length = 349
Score = 54.7 bits (130), Expect = 3e-06 Identities = 28/78 (35%), Positives = 38/78 (48%) Frame = +2
Query: 302 NIAATHEGQATEQELQQHPPWLPIVRTGQTSNGFRNYECPICLEILQASDKASSLLPCNH 481 N A H ++E + P + I G N CP+CLE A ++A + PC H Sbjct: 186 NDAGRHGTPPAKKEAVEAMPTVEIA--GGNGNDDDTASCPVCLEDYAAGERAREM-PCRH 242
Query: 482 AFHLQCITSWLNLNSSCP 535 FH CI WL ++SSCP Sbjct: 243 RFHSNCIVPWLEMHSSCP 260
>tr|A8E124|A8E124_SPIOL NEP1-interacting protein OS=Spinacia oleracea GN=nip PE=2 SV=1 Length = 235
Score = 54.7 bits (130), Expect = 3e-06 Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 1/108 (0%) Frame = +2
Query: 215 PLQLSTAQAQ-GRTIINFRGLLIDVTPSWLNIAATHEGQATEQELQQHPPWLPIVRTGQT 391 P LS Q+Q G NF D+T NI T + +L + P + I + Sbjct: 130 PAMLSAVQSQMGAVETNFE----DIT----NIFDTGSVKGLSGDLVEKIPKIKITKNNNN 181
Query: 392 SNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 C +CL+ Q + SL C+H FHL CI WL ++SCP Sbjct: 182 DASGERVSCSVCLQDFQIGETVRSLPDCHHLFHLPCIDKWLLKHASCP 229
>tr|A7PD18|A7PD18_VITVI Chromosome chr17 scaffold_12, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00016103001 PE=4 SV=1 Length = 381
Score = 53.9 bits (128), Expect = 5e-06 Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 17/122 (13%) Frame = +2
Query: 221 QLSTAQAQGRTIINFRGLLIDV--TPSWLNIAATHEGQATEQELQQHPPWLPIVRTG--- 385 Q +AQ ++ G+L+D+ P W AA E + Q+ + P L + T Sbjct: 153 QAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQEMRGMGQDAAAYHPGLYLTPTQREA 212
Query: 386 -----QTSNGFRNY-------ECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSS 529 Q FR ECPICLE ++ L PC H FH++CI WL LN Sbjct: 213 VEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGL-PCAHNFHVECIDEWLRLNVK 271
Query: 530 CP 535 CP Sbjct: 272 CP 273
>tr|A7NY09|A7NY09_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023937001 PE=4 SV=1 Length = 177
Score = 53.9 bits (128), Expect = 5e-06 Identities = 24/57 (42%), Positives = 31/57 (54%) Frame = +2
Query: 365 LPIVRTGQTSNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 +P+V G + +CPICL DK L CNH FH++CI +WL SSCP Sbjct: 98 IPVVVYGSSGLTTPATDCPICLGEFTEGDKVRILPKCNHGFHVKCIDTWLMSRSSCP 154
>tr|A5AZN8|A5AZN8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035033 PE=4 SV=1 Length = 219
Score = 53.9 bits (128), Expect = 5e-06 Identities = 24/57 (42%), Positives = 31/57 (54%) Frame = +2
Query: 365 LPIVRTGQTSNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 +P+V G + +CPICL DK L CNH FH++CI +WL SSCP Sbjct: 140 IPVVVYGSSGLTTPATDCPICLGEFTEGDKVRILPKCNHGFHVKCIDTWLMSRSSCP 196
>tr|B8LN43|B8LN43_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 187
Score = 53.5 bits (127), Expect = 7e-06 Identities = 20/43 (46%), Positives = 28/43 (65%) Frame = +2
Query: 407 NYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 N EC +CLE Q+ D+ + C+HAFH+QC +WL+ S CP Sbjct: 84 NAECAVCLEAFQSGDRCRVIPVCSHAFHVQCADAWLSKRSVCP 126
>tr|B6UH48|B6UH48_MAIZE RING-H2 finger protein ATL5H OS=Zea mays PE=2 SV=1 Length = 201
Score = 53.5 bits (127), Expect = 7e-06 Identities = 29/108 (26%), Positives = 47/108 (43%) Frame = +2
Query: 212 IPLQLSTAQAQGRTIINFRGLLIDVTPSWLNIAATHEGQATEQELQQHPPWLPIVRTGQT 391 +P ++T A+GR + ID P++ G + + Sbjct: 80 LPTTMATPAARGRAVCGLVDAAIDALPAFAYARPATCGAES------------------S 121
Query: 392 SNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 535 S R CP+CLE ++A + L C H FH++CI WL+ ++SCP Sbjct: 122 SKSGRLALCPVCLEEVEAGEMVRQLPACGHLFHVECIDMWLHSHASCP 169
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