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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955211
Clone id TST39A01NGRL0022_H21
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_H21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTGGTCCATCGGGCCACATGATATT
AACCTAATTTTTCTCACGGGGGCAGCCCCCTCCCGGCAGCTTGCTGCCCGGGGGCTGCGC
GCGTCGCCTCTGTATTGCACTGCCTCAGAGGCCTGGCGCACCCCCCTTCCAAATTTTCAA
ACTCAAATCTCTTCTGCGATGGCCCCACAAAACGCTTTGAAACTTGTCTGCTGTGATGAG
CAGTGGCTGATGACGAATTGGATTTCGTTGCTTTGAGACATGCCAATCGGGATTGCTCAG
AGAAAAAGAGGCTTGATAGCACATCAGAGAGCATGACCGGTGAAGTTTACCATCTCTCGA
GCAGAACAACTCTAGCCCAACAAAGGGTGTCATGTCTAGGCATACAAGCACACACTGCAA
GAAGGGCTTCCAAGGCTCATCCCACGCACTTGAGCATCTCGGCTTTGCCCAGACTAGGCA
GAATAATAGTAGCGTGCCAAGCAACATTGGGCGAGAAGGACAGATGCCCCTATC
■■Homology search results ■■ -
sp_hit_id Q8N1N2
Definition sp|Q8N1N2|CR026_HUMAN Uncharacterized protein C18orf26 OS=Homo sapiens
Align length 72
Score (bit) 32.3
E-value 1.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955211|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_H21, 5'
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N1N2|CR026_HUMAN Uncharacterized protein C18orf26 OS=Homo s...    32   1.5  
sp|Q63372|NRX1A_RAT Neurexin-1-alpha OS=Rattus norvegicus GN=Nrx...    32   1.9  
sp|Q9CS84|NRX1A_MOUSE Neurexin-1-alpha OS=Mus musculus GN=Nrxn1 ...    32   1.9  
sp|Q9ULB1|NRX1A_HUMAN Neurexin-1-alpha OS=Homo sapiens GN=NRXN1 ...    32   1.9  
sp|Q28146|NRX1A_BOVIN Neurexin-1-alpha OS=Bos taurus GN=NRXN1 PE...    32   2.5  
sp|Q9GME8|NKG2C_PANTR NKG2-C type II integral membrane protein O...    31   3.3  
sp|Q9UL36|ZN236_HUMAN Zinc finger protein 236 OS=Homo sapiens GN...    31   4.3  
sp|P03291|Y215_ADE02 Uncharacterized protein F-215 OS=Human aden...    30   5.7  
sp|A8MTJ6|YB040_HUMAN Putative forkhead box protein ENSP00000381...    30   9.5  
sp|Q2YC79|CHEB_NITMU Chemotaxis response regulator protein-gluta...    30   9.5  
sp|Q9V3C5|RIC1_DROME Protein RIC1 homolog OS=Drosophila melanoga...    30   9.7  

>sp|Q8N1N2|CR026_HUMAN Uncharacterized protein C18orf26 OS=Homo
           sapiens GN=C18orf26 PE=2 SV=1
          Length = 210

 Score = 32.3 bits (72), Expect = 1.5
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = -1

Query: 528 GICPSRPMLLGTLLL---FCLVWAKPRCSSAWDEPWKPFLQCVLVCLDMTPFVGLELFCS 358
           G+C +  +L  +  L    C    K  C + W   WK FL C+L C+ MT  +G+ + C 
Sbjct: 78  GVCVNPGILAHSRCLQSESCNTQVKEYCRNDWSM-WKVFLACLLACVIMTA-IGVLIICL 135

Query: 357 RDGKLHRSCSLM 322
            + K   + S++
Sbjct: 136 VNNKGSANSSIV 147


>sp|Q63372|NRX1A_RAT Neurexin-1-alpha OS=Rattus norvegicus GN=Nrxn1
           PE=1 SV=3
          Length = 1530

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = -1

Query: 375 LELFCSRDGKLHRSCSLMCYQ-----ASFSLSNPDWHVSKQRNPIRHQPLLITADKFQSV 211
           LEL  +R G+L  S S+ C +     A   +++  WH  + R   R+  L I   + + V
Sbjct: 79  LELILTRGGRLQLSFSIFCAEPATLLADTPVNDGAWHSVRIRRQFRNTTLYIDRAEAKWV 138

Query: 210 LWGHRRRDLSL--KIWKGGAP 154
               +RRD+++   ++ GG P
Sbjct: 139 EVKSKRRDMTVFSGLFVGGLP 159


>sp|Q9CS84|NRX1A_MOUSE Neurexin-1-alpha OS=Mus musculus GN=Nrxn1
           PE=1 SV=3
          Length = 1514

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = -1

Query: 375 LELFCSRDGKLHRSCSLMCYQ-----ASFSLSNPDWHVSKQRNPIRHQPLLITADKFQSV 211
           LEL  +R G+L  S S+ C +     A   +++  WH  + R   R+  L I   + + V
Sbjct: 79  LELILTRGGRLQLSFSIFCAEPATLLADTPVNDGAWHSVRIRRQFRNTTLYIDRAEAKWV 138

Query: 210 LWGHRRRDLSL--KIWKGGAP 154
               +RRD+++   ++ GG P
Sbjct: 139 EVKSKRRDMTVFSGLFVGGLP 159


>sp|Q9ULB1|NRX1A_HUMAN Neurexin-1-alpha OS=Homo sapiens GN=NRXN1
           PE=1 SV=1
          Length = 1477

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = -1

Query: 375 LELFCSRDGKLHRSCSLMCYQ-----ASFSLSNPDWHVSKQRNPIRHQPLLITADKFQSV 211
           LEL  +R G+L  S S+ C +     A   +++  WH  + R   R+  L I   + + V
Sbjct: 79  LELILTRGGRLQLSFSIFCAEPATLLADTPVNDGAWHSVRIRRQFRNTTLFIDQVEAKWV 138

Query: 210 LWGHRRRDLSL--KIWKGGAP 154
               +RRD+++   ++ GG P
Sbjct: 139 EVKSKRRDMTVFSGLFVGGLP 159


>sp|Q28146|NRX1A_BOVIN Neurexin-1-alpha OS=Bos taurus GN=NRXN1 PE=1
           SV=1
          Length = 1530

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
 Frame = -1

Query: 375 LELFCSRDGKLHRSCSLMCYQASFSLSNPD-----WHVSKQRNPIRHQPLLITADKFQSV 211
           LEL  +R G+L  S S+ C + +  L++       WH  + R   R+  L I   + + V
Sbjct: 79  LELILTRGGRLQLSFSIFCAEPATLLTDTPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWV 138

Query: 210 LWGHRRRDLSL--KIWKGGAP 154
               +RRD+++   ++ GG P
Sbjct: 139 EVKSKRRDMTVFSGLFVGGLP 159


>sp|Q9GME8|NKG2C_PANTR NKG2-C type II integral membrane protein
           OS=Pan troglodytes GN=KLRC2 PE=2 SV=1
          Length = 233

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 347 LPSLEQNNSSPTKGVMSRHTSTHCKKGFQGSSHALEHLG 463
           +P LEQNNSSP  G        HC + +   S++  ++G
Sbjct: 94  IPFLEQNNSSPNTGTQKARHCGHCPEEWITYSNSCYYIG 132


>sp|Q9UL36|ZN236_HUMAN Zinc finger protein 236 OS=Homo sapiens
            GN=ZNF236 PE=2 SV=1
          Length = 1845

 Score = 30.8 bits (68), Expect = 4.3
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 10/63 (15%)
 Frame = +2

Query: 365  NNSSPTKGVMSRHTSTH----------CKKGFQGSSHALEHLGFAQTRQNNSSVPSNIGR 514
            N S  T G ++RH +TH          C++GF+ + H  +H+      + + +VPS +  
Sbjct: 1029 NASFTTNGSLTRHMATHMSMKPYKCPFCEEGFRTTVHCKKHM------KRHQTVPSAVSA 1082

Query: 515  EGQ 523
             G+
Sbjct: 1083 TGE 1085


>sp|P03291|Y215_ADE02 Uncharacterized protein F-215 OS=Human
           adenovirus C serotype 2 PE=4 SV=1
          Length = 215

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = -1

Query: 261 PIRHQPLLITADKFQSVLWGHRRRDLSLKIWKGGAPGL*GSAIQRRRAQP-PGSKLPGGG 85
           P    P  +TA  F+ ++ GH R       ++  A G+   A  RRR QP PG+++  G 
Sbjct: 141 PYLRGPARVTA--FRCIIQGHPRGPPPAARYRSRAAGMRPLASHRRRHQPAPGNQVSPGP 198

Query: 84  CPR 76
            PR
Sbjct: 199 SPR 201


>sp|A8MTJ6|YB040_HUMAN Putative forkhead box protein ENSP00000381211
           OS=Homo sapiens PE=5 SV=2
          Length = 411

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 69  FSHGGSPLPAA--CCPGAARVASVLHCLRGLAHPPSKFSNSNLFCDGP 206
           +S  G P PAA    PGA   A   + L   A PP+  +N  L+ +GP
Sbjct: 38  YSQPGLPPPAATAAAPGAPPAARAPYGLADYAAPPAAAANPYLWLNGP 85


>sp|Q2YC79|CHEB_NITMU Chemotaxis response regulator
           protein-glutamate methylesterase OS=Nitrosospira
           multiformis (strain ATCC 25196 / NCIMB 11849) GN=cheB
           PE=3 SV=1
          Length = 355

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 461 GFAQTRQNNSSVPSNIGREGQMPL 532
           GF Q  +N+S++P +I R+G++PL
Sbjct: 205 GFVQWLKNSSNLPVHIARQGELPL 228
tr_hit_id A9JTR5
Definition tr|A9JTR5|A9JTR5_XENTR LOC100127831 protein (Fragment) OS=Xenopus tropicalis
Align length 49
Score (bit) 34.3
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955211|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_H21, 5'
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9JTR5|A9JTR5_XENTR LOC100127831 protein (Fragment) OS=Xenopu...    34   4.2  
tr|A7YYB2|A7YYB2_DANRE Putative uncharacterized protein (Fragmen...    34   4.2  
tr|A8B7Y8|A8B7Y8_GIALA Putative uncharacterized protein OS=Giard...    33   7.0  
tr|Q64MX0|Q64MX0_BACFR Putative uncharacterized protein OS=Bacte...    33   9.3  
tr|Q5L7Q0|Q5L7Q0_BACFN Putative uncharacterized protein OS=Bacte...    33   9.3  

>tr|A9JTR5|A9JTR5_XENTR LOC100127831 protein (Fragment) OS=Xenopus
           tropicalis GN=LOC100127831 PE=2 SV=1
          Length = 485

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +1

Query: 1   VVSVLISLISDTWSIGPHDINLIFLTGAAPSRQLAARGLRASPLYCTAS 147
           VVSVLISLISDT       I LIF TG      L  R L AS  YC+ S
Sbjct: 11  VVSVLISLISDTCPTRAPYIKLIFGTGRWNRGLL--RPLHASTRYCSTS 57


>tr|A7YYB2|A7YYB2_DANRE Putative uncharacterized protein (Fragment)
           OS=Danio rerio PE=2 SV=1
          Length = 485

 Score = 34.3 bits (77), Expect = 4.2
 Identities = 26/49 (53%), Positives = 27/49 (55%)
 Frame = +1

Query: 1   VVSVLISLISDTWSIGPHDINLIFLTGAAPSRQLAARGLRASPLYCTAS 147
           VVSVLISLISDT       I LIF TG      L  R L AS  YC+ S
Sbjct: 11  VVSVLISLISDTCPTRAPYIKLIFGTGRWNRGLL--RPLHASTRYCSTS 57


>tr|A8B7Y8|A8B7Y8_GIALA Putative uncharacterized protein OS=Giardia
           lamblia ATCC 50803 GN=GL50803_10892 PE=4 SV=1
          Length = 737

 Score = 33.5 bits (75), Expect = 7.0
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
 Frame = +2

Query: 356 LEQNNSSPTKGVMSRHTST-HCKKGFQGSSHALEHL-----GFAQTRQNNSSVPSNIGRE 517
           LEQ+N S    +M R  +T  CK G Q +  A+ H+      FA+T Q   S+PS +  +
Sbjct: 170 LEQSNQSKWAELMVRARNTLKCKAGAQVNEQAILHMFERLVNFAETTQAQKSLPSVVSAK 229

Query: 518 GQ 523
            Q
Sbjct: 230 SQ 231


>tr|Q64MX0|Q64MX0_BACFR Putative uncharacterized protein
            OS=Bacteroides fragilis GN=BF4430 PE=4 SV=1
          Length = 1507

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 160  TPLPNFQTQISSAMAPQNALKLVCCDEQWLMTNW 261
            TPLP  Q      M   +A +LVC D  W+ T W
Sbjct: 1150 TPLPALQKIAPGKMVTLSATRLVCSDPAWIHTGW 1183


>tr|Q5L7Q0|Q5L7Q0_BACFN Putative uncharacterized protein
            OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
            GN=BF4227 PE=4 SV=1
          Length = 1507

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 160  TPLPNFQTQISSAMAPQNALKLVCCDEQWLMTNW 261
            TPLP  Q      M   +A +LVC D  W+ T W
Sbjct: 1150 TPLPALQKIAPGKMVTLSATRLVCSDPAWIHTGW 1183