DK955218
Clone id TST39A01NGRL0022_I04
Library
Length 455
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_I04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGAATTGTGACGTTCTTCATGGTGAATTGTGATGTTGCCTTGTTGGTTTGGAGCTTGTG
AAGGGGAAGGATATCATCGCTATTCTTTCATCAACAGCTAGCTGATGAGGCACATTCACA
TGTGGCTCTTCTGCCACTACATCCAGATGTACGTGCAAAGTTTAACAGTAGTGCAGCTTG
GTAACATGCAAGGATGATGGATGGGAAACCGTATGGATATCATAGTTTGATTTTCAGCTG
GATTGACACAAAAACTGACAATTTTCCACCTCTAGTTGATGCACATCTGGTGATGTCTGT
TATGACTCTTTGGACGCAAATGCAGCCAGACTAAGCGGCAAACATGTGGAATGAAGCATT
GAATAAAAGGTGGGCAAATCCTTTGCCTATGGTCCGTGTGGTGGGAAAATCCTTTGTCTC
TCCTGCGGTTGGCATTGGCACCCTTTGCATCATCT
■■Homology search results ■■ -
sp_hit_id O53657
Definition sp|O53657|MMPL3_MYCTU Putative membrane protein mmpL3 OS=Mycobacterium tuberculosis
Align length 63
Score (bit) 30.8
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955218|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_I04, 5'
(455 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O53657|MMPL3_MYCTU Putative membrane protein mmpL3 OS=Mycobac... 31 2.9
sp|Q7PLI2|NIPB_DROME Nipped-B protein OS=Drosophila melanogaster... 30 4.9
sp|Q99J56|DERL1_MOUSE Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1 30 4.9
sp|Q5R9W3|DERL1_PONAB Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1 30 6.4
sp|Q9BUN8|DERL1_HUMAN Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1 30 6.4
sp|Q71SS4|DERL1_BOVIN Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1 30 6.4

>sp|O53657|MMPL3_MYCTU Putative membrane protein mmpL3
OS=Mycobacterium tuberculosis GN=mmpL3 PE=3 SV=2
Length = 944

Score = 30.8 bits (68), Expect = 2.9
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +2

Query: 251 KTDNFPPLVDAHLV---MSVMTLWTQMQPD*-AANMWNEALNKRWANPLPMVRVVGKSFV 418
+T N P+ DA + M + ++PD ANMW E A+ P VRV+ +
Sbjct: 457 QTSNHQPVTDAQIADIRSKAMAIGGFIEPDNDPANMWQERAYAVGASKDPSVRVLQNGLI 516

Query: 419 SPA 427
+PA
Sbjct: 517 NPA 519


>sp|Q7PLI2|NIPB_DROME Nipped-B protein OS=Drosophila melanogaster
GN=Nipped-B PE=1 SV=3
Length = 2077

Score = 30.0 bits (66), Expect = 4.9
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -1

Query: 119 VNVPHQLAVDERIAMISFPFTSSKPTRQHHNS 24
VN+P+ L V S PFT S+PT+ HH+S
Sbjct: 279 VNIPNMLYVQ------SPPFTESEPTQAHHSS 304


>sp|Q99J56|DERL1_MOUSE Derlin-1 OS=Mus musculus GN=Derl1 PE=2 SV=1
Length = 251

Score = 30.0 bits (66), Expect = 4.9
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Frame = +2

Query: 188 ARMMDGKPYGY-HSLIFSWIDTKTDNFP---PLVDAHLVMSVMTLWTQMQPD*AANMWNE 355
A DG+P Y L+F+WI L+ L+MSV+ +W Q+ D + W
Sbjct: 88 AGAFDGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWAQLNRDLIVSFWFG 147

Query: 356 ALNKRWANP---LPMVRVVGKSFVSPAVG 433
K P L ++G S ++ +G
Sbjct: 148 TRFKACYLPWVILGFNYIIGGSVINELIG 176


>sp|Q5R9W3|DERL1_PONAB Derlin-1 OS=Pongo abelii GN=DERL1 PE=2 SV=1
Length = 251

Score = 29.6 bits (65), Expect = 6.4
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2

Query: 200 DGKPYGY-HSLIFSWIDTKTDNFP---PLVDAHLVMSVMTLWTQMQPD*AANMWNEALNK 367
DG+P Y L+F+WI L+ L+MSV+ +W Q+ D + W K
Sbjct: 92 DGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFK 151

Query: 368 RWANP---LPMVRVVGKSFVSPAVG 433
P L ++G S ++ +G
Sbjct: 152 ACYLPWVILGFNYIIGGSVINELIG 176


>sp|Q9BUN8|DERL1_HUMAN Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1
Length = 251

Score = 29.6 bits (65), Expect = 6.4
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2

Query: 200 DGKPYGY-HSLIFSWIDTKTDNFP---PLVDAHLVMSVMTLWTQMQPD*AANMWNEALNK 367
DG+P Y L+F+WI L+ L+MSV+ +W Q+ D + W K
Sbjct: 92 DGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFK 151

Query: 368 RWANP---LPMVRVVGKSFVSPAVG 433
P L ++G S ++ +G
Sbjct: 152 ACYLPWVILGFNYIIGGSVINELIG 176


>sp|Q71SS4|DERL1_BOVIN Derlin-1 OS=Bos taurus GN=DERL1 PE=2 SV=1
Length = 251

Score = 29.6 bits (65), Expect = 6.4
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Frame = +2

Query: 200 DGKPYGY-HSLIFSWIDTKTDNFP---PLVDAHLVMSVMTLWTQMQPD*AANMWNEALNK 367
DG+P Y L+F+WI L+ L+MSV+ +W Q+ D + W K
Sbjct: 92 DGRPADYLFMLLFNWICIVITGLAMDMQLLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFK 151

Query: 368 RWANP---LPMVRVVGKSFVSPAVG 433
P L ++G S ++ +G
Sbjct: 152 ACYLPWVILGFNYIIGGSVINELIG 176


tr_hit_id Q9SZ41
Definition tr|Q9SZ41|Q9SZ41_ARATH Putative uncharacterized protein F10M23.360 (At4g27020/F10M23_360) (Putative uncharacterized protein AT4g27020) OS=Arabidopsis thaliana
Align length 93
Score (bit) 145.0
E-value 8.0e-34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK955218|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_I04, 5'
(455 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q9SZ41|Q9SZ41_ARATH Putative uncharacterized protein F10M23.3... 145 8e-34
tr|B8LP81|B8LP81_PICSI Putative uncharacterized protein OS=Picea... 145 8e-34
tr|A9TA22|A9TA22_PHYPA Predicted protein OS=Physcomitrella paten... 145 8e-34
tr|Q9FFU3|Q9FFU3_ARATH Genomic DNA, chromosome 5, P1 clone:MBG8 ... 145 1e-33
tr|A9NVI8|A9NVI8_PICSI Putative uncharacterized protein OS=Picea... 143 5e-33
tr|Q9C5K0|Q9C5K0_ARATH Putative uncharacterized protein At1g7016... 142 6e-33
tr|Q56WL6|Q56WL6_ARATH Putative uncharacterized protein At1g7016... 142 6e-33
tr|O04530|O04530_ARATH F20P5.12 protein OS=Arabidopsis thaliana ... 142 6e-33
tr|A7Q2K1|A7Q2K1_VITVI Chromosome chr1 scaffold_46, whole genome... 142 8e-33
tr|A2WVX5|A2WVX5_ORYSI Putative uncharacterized protein OS=Oryza... 142 1e-32
tr|Q8S1L2|Q8S1L2_ORYSJ Putative uncharacterized protein P0684C02... 141 1e-32
tr|Q5ZBU1|Q5ZBU1_ORYSJ cDNA clone:J033024J15, full insert sequen... 141 1e-32
tr|Q0JIL6|Q0JIL6_ORYSJ Os01g0793500 protein (Fragment) OS=Oryza ... 141 1e-32
tr|A2ZYL2|A2ZYL2_ORYSJ Putative uncharacterized protein OS=Oryza... 141 1e-32
tr|B6TSK0|B6TSK0_MAIZE Putative uncharacterized protein OS=Zea m... 140 4e-32
tr|B6SW19|B6SW19_MAIZE Putative uncharacterized protein OS=Zea m... 140 4e-32
tr|B4G1X6|B4G1X6_MAIZE Putative uncharacterized protein OS=Zea m... 140 4e-32
tr|B4G0B4|B4G0B4_MAIZE Putative uncharacterized protein OS=Zea m... 140 4e-32
tr|Q6H416|Q6H416_ORYSJ Os09g0392000 protein OS=Oryza sativa subs... 139 5e-32
tr|B6SZ90|B6SZ90_MAIZE Putative uncharacterized protein OS=Zea m... 139 5e-32
tr|A7P0T1|A7P0T1_VITVI Chromosome chr19 scaffold_4, whole genome... 139 5e-32
tr|A2Z0X5|A2Z0X5_ORYSI Putative uncharacterized protein OS=Oryza... 139 5e-32
tr|Q7EZU2|Q7EZU2_ORYSJ Os08g0425000 protein OS=Oryza sativa subs... 137 2e-31
tr|B8BAZ5|B8BAZ5_ORYSI Putative uncharacterized protein OS=Oryza... 137 2e-31
tr|A3BT99|A3BT99_ORYSJ Putative uncharacterized protein OS=Oryza... 137 2e-31
tr|A7P0T4|A7P0T4_VITVI Chromosome chr19 scaffold_4, whole genome... 135 1e-30
tr|A5AXY6|A5AXY6_VITVI Putative uncharacterized protein OS=Vitis... 135 1e-30
tr|A9TSP9|A9TSP9_PHYPA Predicted protein OS=Physcomitrella paten... 131 1e-29
tr|A0DFG2|A0DFG2_PARTE Chromosome undetermined scaffold_49, whol... 78 2e-13
tr|A0CDJ5|A0CDJ5_PARTE Chromosome undetermined scaffold_17, whol... 76 7e-13

>tr|Q9SZ41|Q9SZ41_ARATH Putative uncharacterized protein F10M23.360
(At4g27020/F10M23_360) (Putative uncharacterized protein
AT4g27020) OS=Arabidopsis thaliana GN=F10M23.360 PE=2
SV=1
Length = 523

Score = 145 bits (367), Expect = 8e-34
Identities = 65/93 (69%), Positives = 80/93 (86%)
Frame = +2

Query: 92 QQLADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPP 271
+Q D+++ H+ALLPLHPD RAKFN +AAW +AR MDGKPYGYH+LIFSWIDT + N+PP
Sbjct: 289 EQTKDDSNPHIALLPLHPDYRAKFNVTAAWEYARSMDGKPYGYHNLIFSWIDTISGNYPP 348

Query: 272 LVDAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
+DA LV SVMT+W+++QPD AANMWNEALNKR
Sbjct: 349 PLDAQLVASVMTVWSKIQPDYAANMWNEALNKR 381


>tr|B8LP81|B8LP81_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 520

Score = 145 bits (367), Expect = 8e-34
Identities = 65/96 (67%), Positives = 81/96 (84%)
Frame = +2

Query: 83 FFHQQLADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDN 262
+F +Q D ++ HVALLPLH D+RAKFN++AAW + M G+PYGYH++IFSWIDT TDN
Sbjct: 283 WFDEQQKDISNPHVALLPLHSDLRAKFNATAAWAYVLNMSGEPYGYHNMIFSWIDTLTDN 342

Query: 263 FPPLVDAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
+PP +DAHLV+SVMT+W +MQPD AANMWNEALNKR
Sbjct: 343 YPPPLDAHLVVSVMTIWNRMQPDYAANMWNEALNKR 378


>tr|A9TA22|A9TA22_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_193010 PE=4 SV=1
Length = 525

Score = 145 bits (367), Expect = 8e-34
Identities = 64/92 (69%), Positives = 80/92 (86%)
Frame = +2

Query: 95 QLADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPPL 274
Q+AD A+ H+A+LPLHPDVRAKFN +AAW +AR M G PYGYH++IFSWIDT TDN+PP
Sbjct: 293 QIADVANCHLAVLPLHPDVRAKFNVTAAWEYARRMSGAPYGYHNMIFSWIDTPTDNYPPP 352

Query: 275 VDAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
+D++LV S +T+WT++QPD AANMWNEALNKR
Sbjct: 353 LDSNLVASAITMWTRLQPDFAANMWNEALNKR 384


>tr|Q9FFU3|Q9FFU3_ARATH Genomic DNA, chromosome 5, P1 clone:MBG8
OS=Arabidopsis thaliana PE=4 SV=1
Length = 531

Score = 145 bits (366), Expect = 1e-33
Identities = 64/93 (68%), Positives = 81/93 (87%)
Frame = +2

Query: 92 QQLADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPP 271
+Q D+++ +ALLPLHPDVRAKF+ +AAW +AR M+GKPYGYH+LIFSWIDT ++N+PP
Sbjct: 297 EQTKDDSNPQIALLPLHPDVRAKFDVAAAWKYARSMEGKPYGYHNLIFSWIDTVSENYPP 356

Query: 272 LVDAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
+DAHLV S MT+W+QMQP+ AANMWNEALNKR
Sbjct: 357 PLDAHLVASFMTVWSQMQPEYAANMWNEALNKR 389


>tr|A9NVI8|A9NVI8_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 521

Score = 143 bits (360), Expect = 5e-33
Identities = 62/92 (67%), Positives = 80/92 (86%)
Frame = +2

Query: 95 QLADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPPL 274
+L D ++ +ALLPL PD+RAKFN++AAW +AR M GKPYGYH++IFSWIDT TDN+PP
Sbjct: 288 ELKDSSNPQIALLPLDPDLRAKFNATAAWDYARNMSGKPYGYHNMIFSWIDTITDNYPPP 347

Query: 275 VDAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
+DAHLV+S+M +WT++QP+ AANMWNEALNKR
Sbjct: 348 LDAHLVLSIMAMWTRVQPNYAANMWNEALNKR 379


>tr|Q9C5K0|Q9C5K0_ARATH Putative uncharacterized protein At1g70160
OS=Arabidopsis thaliana GN=At1g70160 PE=2 SV=1
Length = 523

Score = 142 bits (359), Expect = 6e-33
Identities = 64/91 (70%), Positives = 79/91 (86%)
Frame = +2

Query: 98 LADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPPLV 277
L D ++ VALLPLHPD+RAKFN++AAW +AR M GKPYGYH++IFSWIDT DN+PP +
Sbjct: 292 LKDNSNPQVALLPLHPDIRAKFNNTAAWEYARSMLGKPYGYHNMIFSWIDTLGDNYPPPL 351

Query: 278 DAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
DAHLV+SVM++WT++QP AANMWNEALNKR
Sbjct: 352 DAHLVISVMSMWTRVQPAYAANMWNEALNKR 382


>tr|Q56WL6|Q56WL6_ARATH Putative uncharacterized protein At1g70160
(Fragment) OS=Arabidopsis thaliana GN=At1g70160 PE=2
SV=1
Length = 258

Score = 142 bits (359), Expect = 6e-33
Identities = 64/91 (70%), Positives = 79/91 (86%)
Frame = +2

Query: 98 LADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPPLV 277
L D ++ VALLPLHPD+RAKFN++AAW +AR M GKPYGYH++IFSWIDT DN+PP +
Sbjct: 27 LKDNSNPQVALLPLHPDIRAKFNNTAAWEYARSMLGKPYGYHNMIFSWIDTLGDNYPPPL 86

Query: 278 DAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
DAHLV+SVM++WT++QP AANMWNEALNKR
Sbjct: 87 DAHLVISVMSMWTRVQPAYAANMWNEALNKR 117


>tr|O04530|O04530_ARATH F20P5.12 protein OS=Arabidopsis thaliana
GN=F20P5.12 PE=4 SV=1
Length = 551

Score = 142 bits (359), Expect = 6e-33
Identities = 64/91 (70%), Positives = 79/91 (86%)
Frame = +2

Query: 98 LADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPPLV 277
L D ++ VALLPLHPD+RAKFN++AAW +AR M GKPYGYH++IFSWIDT DN+PP +
Sbjct: 320 LKDNSNPQVALLPLHPDIRAKFNNTAAWEYARSMLGKPYGYHNMIFSWIDTLGDNYPPPL 379

Query: 278 DAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
DAHLV+SVM++WT++QP AANMWNEALNKR
Sbjct: 380 DAHLVISVMSMWTRVQPAYAANMWNEALNKR 410


>tr|A7Q2K1|A7Q2K1_VITVI Chromosome chr1 scaffold_46, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028917001
PE=4 SV=1
Length = 520

Score = 142 bits (358), Expect = 8e-33
Identities = 63/91 (69%), Positives = 78/91 (85%)
Frame = +2

Query: 98 LADEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPPLV 277
L D ++ +ALLPLHPD+RAKFN++AAW +AR M GKPYGYH++IFSWIDT DN+PP +
Sbjct: 289 LKDNSNPQIALLPLHPDLRAKFNATAAWEYARSMAGKPYGYHNMIFSWIDTIADNYPPPL 348

Query: 278 DAHLVMSVMTLWTQMQPD*AANMWNEALNKR 370
DAHLV+SVM++WT+MQP A NMWNEALNKR
Sbjct: 349 DAHLVISVMSMWTRMQPAYAENMWNEALNKR 379


>tr|A2WVX5|A2WVX5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_04050 PE=4 SV=1
Length = 405

Score = 142 bits (357), Expect = 1e-32
Identities = 61/94 (64%), Positives = 79/94 (84%)
Frame = +2

Query: 104 DEAHSHVALLPLHPDVRAKFNSSAAW*HARMMDGKPYGYHSLIFSWIDTKTDNFPPLVDA 283
D+++ +ALLPLHPD+RAKFN +AAW +A+ MDGKPYGYH++IFSWIDT +DN+PP +DA
Sbjct: 309 DDSNPQIALLPLHPDLRAKFNETAAWEYAKSMDGKPYGYHNMIFSWIDTISDNYPPPLDA 368

Query: 284 HLVMSVMTLWTQMQPD*AANMWNEALNKRWANPL 385
H+V SVMT+W ++QP+ AANMW EALNKR L
Sbjct: 369 HVVASVMTMWNKLQPEYAANMWKEALNKRLGTKL 402