DK955220 |
Clone id |
TST39A01NGRL0022_I06 |
Library |
TST39 |
Length |
535 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_I06. 5' end sequence. |
Accession |
DK955220 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL71Contig1 |
Sequence |
AGCAGGCGTAGCGATGAGTCACCGCAAGTTCGAGCACCCTCGCCACGGATCCCTGGGTTT CCTACCTCGCAAGCGCGCTCGCCGCCACAGAGGAAAGGTGAAATCCTTCCCCAAGGATGA TCCTGCAAAGAAGCCCCACCTCACTGCTTTCCTTGGCTACAAAGCTGGCATGACCCACAT TGTGAGGGAGGTGGAGAAGCCTGGATCAAAACTCCACAAGAAGGAGACATGTGAGGCCGT CACAGTCATTGAGACTCCACCTATGATTGTTGTCGGTCTTGTTGCATATGTGAAGACTCC TCGTGGGCTGCGAACTTTGACTACCGTGTTTGCCCAGCATTTAAGTGATGAGTTGAGGAG GCGTTTCTACAAGAACTGGTACAAGTCCAAGAAGAAGGCATTCACCAAGTACTCCAAGAA GTTTGAACAGGAGGAGGGTAAGAAGGACATAGAATCTGAACTCGAGAAGATGAAGAAATA CGGGAGTGTCATCCGTGTGCTTGCACACACTCAAGTTAGGAAGCTGAAAGGAATC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P22738 |
Definition |
sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana |
Align length |
169 |
Score (bit) |
274.0 |
E-value |
2.0e-73 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TUZ9 |
Definition |
tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
169 |
Score (bit) |
281.0 |
E-value |
1.0e-74 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955220|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_I06, 5' (520 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella paten... 281 1e-74 tr|A9SGV3|A9SGV3_PHYPA Predicted protein OS=Physcomitrella paten... 281 2e-74 tr|A9T2B3|A9T2B3_PHYPA Predicted protein OS=Physcomitrella paten... 278 2e-73 tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea... 275 1e-72 tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromos... 273 3e-72 tr|A9NRB1|A9NRB1_PICSI Putative uncharacterized protein OS=Picea... 273 5e-72 tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2... 272 8e-72 tr|Q9SBR8|Q9SBR8_MEDVA L3 Ribosomal protein OS=Medicago varia GN... 271 1e-71 tr|B7FF74|B7FF74_MEDTR Putative uncharacterized protein (Fragmen... 271 1e-71 tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea m... 269 7e-71 tr|Q6TKR0|Q6TKR0_TOBAC Ribosomal protein L3A OS=Nicotiana tabacu... 268 9e-71 tr|A7R7U1|A7R7U1_VITVI Chromosome undetermined scaffold_2025, wh... 268 9e-71 tr|Q6SKP4|Q6SKP4_SOLLC Ribosomal protein L3 OS=Solanum lycopersi... 268 1e-70 tr|Q2VCJ2|Q2VCJ2_SOLTU Ribosomal protein L3-like OS=Solanum tube... 268 1e-70 tr|A9PB80|A9PB80_POPTR Putative uncharacterized protein OS=Popul... 268 2e-70 tr|A5BAZ0|A5BAZ0_VITVI Putative uncharacterized protein OS=Vitis... 267 2e-70 tr|A9PCQ3|A9PCQ3_POPTR Putative uncharacterized protein OS=Popul... 267 3e-70 tr|A9P806|A9P806_POPTR Putative uncharacterized protein OS=Popul... 267 3e-70 tr|Q6V959|Q6V959_WHEAT Ribosomal protein L3 (Ribosomal protein L... 266 5e-70 tr|Q7X748|Q7X748_WHEAT Ribosomal protein L3 (Ribosomal protein L... 266 6e-70 tr|A1YE28|A1YE28_WHEAT Ribosomal protein L3-A2-II OS=Triticum ae... 266 6e-70 tr|Q7X744|Q7X744_WHEAT Ribosomal protein L3 (Ribosomal protein L... 265 8e-70 tr|Q0IPU6|Q0IPU6_ORYSJ Os12g0167900 protein OS=Oryza sativa subs... 265 1e-69 tr|A2ZIF8|A2ZIF8_ORYSI Putative uncharacterized protein OS=Oryza... 265 1e-69 tr|A1YE34|A1YE34_WHEAT Ribosomal protein L3-B2 OS=Triticum aesti... 264 2e-69 tr|Q0WLE7|Q0WLE7_ARATH Putative uncharacterized protein At1g4317... 263 4e-69 tr|Q53JG0|Q53JG0_ORYSJ 60S ribosomal protein L3, putative, expre... 263 5e-69 tr|A5D934|A5D934_ORYSA Ribosomal protein L3B OS=Oryza sativa GN=... 263 5e-69 tr|A2ZBV5|A2ZBV5_ORYSI Putative uncharacterized protein OS=Oryza... 263 5e-69 tr|A7Y7Q9|A7Y7Q9_PRUDU Putative 60S ribosomal protein L3 (Fragme... 262 7e-69
>tr|A9TUZ9|A9TUZ9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_225706 PE=3 SV=1 Length = 392
Score = 281 bits (720), Expect = 1e-74 Identities = 134/169 (79%), Positives = 148/169 (87%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRA R RGKVK+FPKDDP KKPHLT+FLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRASRSRGKVKTFPKDDPVKKPHLTSFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT++ETPP+IVVGLVAY+KTPRGLR+L TV+AQHLSDE++RRFYK Sbjct: 61 EKPGSKLHKKETCEAVTIVETPPIIVVGLVAYIKTPRGLRSLNTVWAQHLSDEVKRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E EEGK+D++SELE+MKKY SVIRVLAHTQVR Sbjct: 121 NWYKSKKKAFSKYSKRYESEEGKRDLQSELERMKKYASVIRVLAHTQVR 169
>tr|A9SGV3|A9SGV3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_234838 PE=3 SV=1 Length = 392
Score = 281 bits (718), Expect = 2e-74 Identities = 135/169 (79%), Positives = 147/169 (86%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRA R RGKVK+FPKDD +K PHLT+FLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRAARSRGKVKTFPKDDASKAPHLTSFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT++ETPPMIVVGLVAY+KTPRGLR+L TV+AQHLSDE++RRFYK Sbjct: 61 EKPGSKLHKKETCEAVTIVETPPMIVVGLVAYIKTPRGLRSLNTVWAQHLSDEVKRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E EEGKKD+ESELE+MKKY SVIRVLAHTQVR Sbjct: 121 NWSKSKKKAFSNYSKRYESEEGKKDVESELERMKKYASVIRVLAHTQVR 169
>tr|A9T2B3|A9T2B3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_190959 PE=3 SV=1 Length = 392
Score = 278 bits (710), Expect = 2e-73 Identities = 133/169 (78%), Positives = 147/169 (86%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRA R RGKVK+FPKD +K+PHLT+FLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRAARSRGKVKTFPKDVASKEPHLTSFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT++ETPPM+VVGLVAY+KTPRGLR+L TV+AQHLSDE++RRFYK Sbjct: 61 EKPGSKLHKKETCEAVTIVETPPMVVVGLVAYIKTPRGLRSLNTVWAQHLSDEVKRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E EEGKKD+ESELE+MKKY SVIRVLAHTQVR Sbjct: 121 NWYKSKKKAFSKYSKRYESEEGKKDVESELERMKKYASVIRVLAHTQVR 169
>tr|A9NZI7|A9NZI7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 389
Score = 275 bits (702), Expect = 1e-72 Identities = 131/169 (77%), Positives = 147/169 (86%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFP+DD +K LTAFLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDQSKPCKLTAFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT+IETPPM++VG+VAY+KTPRGLRTL TV+AQHLS+E+RRRFYK Sbjct: 61 EKPGSKLHKKETCEAVTLIETPPMVIVGVVAYIKTPRGLRTLNTVWAQHLSEEVRRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW + EEGKKDI++ELEKMKKY +VIRVLAHTQ++ Sbjct: 121 NWYRAKKKAFTKYAKKYDSEEGKKDIQTELEKMKKYATVIRVLAHTQIK 169
>tr|A5BU35|A5BU35_VITVI Putative uncharacterized protein (Chromosome chr18 scaffold_59, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00031743001 PE=3 SV=1 Length = 389
Score = 273 bits (699), Expect = 3e-72 Identities = 130/169 (76%), Positives = 146/169 (86%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRA RHRGKVK+FPKDDP+K LTAFLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCRLTAFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT++ETPPM++VG+VAYVKTPRGLR+L TV+AQHLS+E++RRFYK Sbjct: 61 EKPGSKLHKKETCEAVTIVETPPMVIVGVVAYVKTPRGLRSLNTVWAQHLSEEVKRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E EEGKK I+++LEKMKKY SVIRVLAHTQ+R Sbjct: 121 NWCKSKKKAFTKYSKQYETEEGKKSIQAQLEKMKKYASVIRVLAHTQIR 169
>tr|A9NRB1|A9NRB1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 389
Score = 273 bits (697), Expect = 5e-72 Identities = 129/169 (76%), Positives = 146/169 (86%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFP+DDP+K LTAFLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPRDDPSKPCKLTAFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT+IETPPM++VG+V Y+KTPRGLRTL V+AQHLS+E+RRRFYK Sbjct: 61 EKPGSKLHKKETCEAVTLIETPPMVIVGVVGYIKTPRGLRTLNAVWAQHLSEEVRRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW + EEGKK+I++ELEKMKKY +VIRVLAHTQ++ Sbjct: 121 NWYRAKKKAFTKYAKKYDSEEGKKEIQTELEKMKKYATVIRVLAHTQIK 169
>tr|B4FFZ6|B4FFZ6_MAIZE 60S ribosomal protein L3 OS=Zea mays PE=2 SV=1 Length = 389
Score = 272 bits (695), Expect = 8e-72 Identities = 129/169 (76%), Positives = 145/169 (85%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKR+ RHRGKVKSFP+DDP K HLTAFLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDPKKPCHLTAFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT+IETPP+++VGLVAYVKTPRGLRTL +V+AQHLS+E+RRRFYK Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E + GKK+I+ +LEKMKKY SVIRV+AHTQ+R Sbjct: 121 NWCKSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR 169
>tr|Q9SBR8|Q9SBR8_MEDVA L3 Ribosomal protein OS=Medicago varia GN=rl3 PE=2 SV=1 Length = 388
Score = 271 bits (694), Expect = 1e-71 Identities = 128/169 (75%), Positives = 144/169 (85%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRA RHRGKVK+FPKDDP K P LTAFLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCE VT+IETPPM+VVG+V YVKTPRGLRTL TV+ QHLS+E++RRFYK Sbjct: 61 EKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E +EGKK+I+++LEK+KKY +VIRVLAHTQ+R Sbjct: 121 NWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIR 169
>tr|B7FF74|B7FF74_MEDTR Putative uncharacterized protein (Fragment) OS=Medicago truncatula PE=2 SV=1 Length = 177
Score = 271 bits (694), Expect = 1e-71 Identities = 128/169 (75%), Positives = 144/169 (85%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKRA RHRGKVK+FPKDDP K P LTAFLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPTKPPKLTAFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCE VT+IETPPM+VVG+V YVKTPRGLRTL TV+ QHLS+E++RRFYK Sbjct: 61 EKPGSKLHKKETCEPVTIIETPPMVVVGVVGYVKTPRGLRTLNTVWTQHLSEEIKRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E +EGKK+I+++LEK+KKY +VIRVLAHTQ+R Sbjct: 121 NWCKSKKKAFSKYSKQYESDEGKKNIQTQLEKLKKYATVIRVLAHTQIR 169
>tr|B4FBM9|B4FBM9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 389
Score = 269 bits (687), Expect = 7e-71 Identities = 128/169 (75%), Positives = 144/169 (85%) Frame = +2
Query: 14 MSHRKFEHPRHGSLGFLPRKRARRHRGKVKSFPKDDPAKKPHLTAFLGYKAGMTHIVREV 193 MSHRKFEHPRHGSLGFLPRKR+ RHRGKVKSFP+DD K HLTAFLGYKAGMTHIVREV Sbjct: 1 MSHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPRDDAKKPCHLTAFLGYKAGMTHIVREV 60
Query: 194 EKPGSKLHKKETCEAVTVIETPPMIVVGLVAYVKTPRGLRTLTTVFAQHLSDELRRRFYK 373 EKPGSKLHKKETCEAVT+IETPP+++VGLVAYVKTPRGLRTL +V+AQHLS+E+RRRFYK Sbjct: 61 EKPGSKLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRTLNSVWAQHLSEEVRRRFYK 120
Query: 374 NWXXXXXXXXXXXXXXXEQEEGKKDIESELEKMKKYGSVIRVLAHTQVR 520 NW E + GKK+I+ +LEKMKKY SVIRV+AHTQ+R Sbjct: 121 NWCKSKKKAFTKYALKYENDAGKKEIQLQLEKMKKYASVIRVIAHTQIR 169
|