DK955221 |
Clone id |
TST39A01NGRL0022_I07 |
Library |
TST39 |
Length |
557 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_I07. 5' end sequence. |
Accession |
DK955221 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGATAAATAATGTCGAGTTTCGCTGGACTGAGCGTACTGGCGGCGTTTTGACACCACCAG GTCCACCCTCTCCTTGCACGCTCCCGCTCGTGCAGTAAATCTTCCCCTACGAGTTCGCCA TGTCAGCTGTGCCCGCCTCGTCCTTCCAGCAGCTCGATTTTGTTTCTCTTCTGCTCAGTT GGAGGAGCTTGTGAGTGAAGAAGGGGACGTTGCAATCACCCCATTTGAAGGTCGGCCTGC CCATCGCCAATTTCCTGTCCTTTCTCCTAAAGAGAAGAAAGACCTCCGTGCTTATGCACA CAGTCTTGGAAAGAAAATTGTTTCTCAGCAGATAGGGAAGGCAGGAGTCACTGAGTCTTT AGCAAAGGCTGTTAGCGATGCCTTGGAAGCAAAAGAGATACTGAAGTTAAAGGTTCTTGA TAACTGTCCTGACGAGTTAGAAGTCGTAATCTCAAAAATTGAGGAAGCAACACAAGGCCA GGTTGTGGGTAAGATTGGGAGTGTGATCACCCTGTAACAGACCCAGTCTTCGCAAACTTT CTGAAACGTCCAAGTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P54454 |
Definition |
sp|P54454|YQEI_BACSU Probable RNA-binding protein yqeI OS=Bacillus subtilis |
Align length |
81 |
Score (bit) |
57.8 |
E-value |
4.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955221|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_I07, 5' (557 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P54454|YQEI_BACSU Probable RNA-binding protein yqeI OS=Bacill... 58 4e-08 sp|P0AGK7|YHBY_SHIFL RNA-binding protein yhbY OS=Shigella flexne... 40 0.010 sp|P0AGK4|YHBY_ECOLI RNA-binding protein yhbY OS=Escherichia col... 40 0.010 sp|P0AGK5|YHBY_ECOL6 RNA-binding protein yhbY OS=Escherichia col... 40 0.010 sp|P0AGK6|YHBY_ECO57 RNA-binding protein yhbY OS=Escherichia col... 40 0.010 sp|A0M0J2|F16A1_GRAFK Fructose-1,6-bisphosphatase class 1 1 OS=G... 37 0.050 sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS... 35 0.19 sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysi... 35 0.32 sp|Q63ZL2|HOP2_XENLA Homologous-pairing protein 2 homolog OS=Xen... 32 2.7 sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS... 32 2.7 sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE... 31 3.6 sp|Q9LES9|FDL22_ARATH Putative F-box/FBD/LRR-repeat protein At3g... 31 3.6 sp|Q99MI1|RB6I2_MOUSE ELKS/RAB6-interacting/CAST family member 1... 30 6.1 sp|Q9RA51|METX_THET2 Homoserine O-acetyltransferase OS=Thermus t... 30 6.1 sp|Q8IUD2|RB6I2_HUMAN ELKS/RAB6-interacting/CAST family member 1... 30 8.0 sp|P20971|PGK_METFE Phosphoglycerate kinase (Fragment) OS=Methan... 30 8.0 sp|A1WW08|HIS7_HALHL Imidazoleglycerol-phosphate dehydratase OS=... 30 8.0 sp|Q84N49|CAF1P_MAIZE CRS2-associated factor 1, chloroplastic OS... 30 8.0 sp|A7GXA8|ARLY_CAMC5 Argininosuccinate lyase OS=Campylobacter cu... 30 8.0
>sp|P54454|YQEI_BACSU Probable RNA-binding protein yqeI OS=Bacillus subtilis GN=yqeI PE=4 SV=1 Length = 96
Score = 57.8 bits (138), Expect = 4e-08 Identities = 29/81 (35%), Positives = 52/81 (64%) Frame = +2
Query: 257 VLSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVLDNCPDE 436 +L+ K+K+ LR+ AH L Q+GK GV +++ K +++ALEA+E++K+ VL NC ++ Sbjct: 1 MLTGKQKRFLRSKAHHLTPIF---QVGKGGVNDNMIKQIAEALEARELIKVSVLQNCEED 57
Query: 437 LEVVISKIEEATQGQVVGKIG 499 V + + ++ Q+V IG Sbjct: 58 KNDVAEALVKGSRSQLVQTIG 78
>sp|P0AGK7|YHBY_SHIFL RNA-binding protein yhbY OS=Shigella flexneri GN=yhbY PE=4 SV=1 Length = 97
Score = 39.7 bits (91), Expect = 0.010 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Frame = +2
Query: 260 LSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVLDNCPDEL 439 LS K+K+ L+ AH L ++ +G G+TE + + ALE E++K+K+ + Sbjct: 3 LSTKQKQHLKGLAHPLKPVVL---LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 59
Query: 440 EVVISKIEEATQG---QVVGK 493 +++ I T QV+GK Sbjct: 60 TLIVEAIVRETGACNVQVIGK 80
>sp|P0AGK4|YHBY_ECOLI RNA-binding protein yhbY OS=Escherichia coli (strain K12) GN=yhbY PE=1 SV=1 Length = 97
Score = 39.7 bits (91), Expect = 0.010 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Frame = +2
Query: 260 LSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVLDNCPDEL 439 LS K+K+ L+ AH L ++ +G G+TE + + ALE E++K+K+ + Sbjct: 3 LSTKQKQHLKGLAHPLKPVVL---LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 59
Query: 440 EVVISKIEEATQG---QVVGK 493 +++ I T QV+GK Sbjct: 60 TLIVEAIVRETGACNVQVIGK 80
>sp|P0AGK5|YHBY_ECOL6 RNA-binding protein yhbY OS=Escherichia coli O6 GN=yhbY PE=4 SV=1 Length = 97
Score = 39.7 bits (91), Expect = 0.010 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Frame = +2
Query: 260 LSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVLDNCPDEL 439 LS K+K+ L+ AH L ++ +G G+TE + + ALE E++K+K+ + Sbjct: 3 LSTKQKQHLKGLAHPLKPVVL---LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 59
Query: 440 EVVISKIEEATQG---QVVGK 493 +++ I T QV+GK Sbjct: 60 TLIVEAIVRETGACNVQVIGK 80
>sp|P0AGK6|YHBY_ECO57 RNA-binding protein yhbY OS=Escherichia coli O157:H7 GN=yhbY PE=4 SV=1 Length = 97
Score = 39.7 bits (91), Expect = 0.010 Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Frame = +2
Query: 260 LSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVLDNCPDEL 439 LS K+K+ L+ AH L ++ +G G+TE + + ALE E++K+K+ + Sbjct: 3 LSTKQKQHLKGLAHPLKPVVL---LGSNGLTEGVLAEIEQALEHHELIKVKIATEDRETK 59
Query: 440 EVVISKIEEATQG---QVVGK 493 +++ I T QV+GK Sbjct: 60 TLIVEAIVRETGACNVQVIGK 80
>sp|A0M0J2|F16A1_GRAFK Fructose-1,6-bisphosphatase class 1 1 OS=Gramella forsetii (strain KT0803) GN=fbp1 PE=3 SV=1 Length = 332
Score = 37.4 bits (85), Expect = 0.050 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 2/77 (2%) Frame = +2
Query: 266 PKEKKDLRAYAHS--LGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVLDNCPDEL 439 P K +L A S L K+V+QQI KAG+ E L KA + ++ + KL VL N Sbjct: 19 PYAKGELSALLSSIRLAGKVVNQQINKAGLAEILGKAGKENVQGESQAKLDVLAN----- 73
Query: 440 EVVISKIEEATQGQVVG 490 E+ +S + +G++ G Sbjct: 74 EIFVSTLR--NRGEICG 88
>sp|Q9SL79|CAF1P_ARATH CRS2-associated factor 1, chloroplastic OS=Arabidopsis thaliana GN=At2g20020 PE=1 SV=2 Length = 701
Score = 35.4 bits (80), Expect = 0.19 Identities = 18/78 (23%), Positives = 39/78 (50%) Frame = +2
Query: 266 PKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVLDNCPDELEV 445 P K+++R S K +G+ G+T ++ + D + + + K+K C +++ Sbjct: 242 PLTKEEVRELVTSCLKTTRQLNMGRDGLTHNMLNNIHDLWKRRRVCKIKCKGVCTVDMDN 301
Query: 446 VISKIEEATQGQVVGKIG 499 V ++EE G+V+ + G Sbjct: 302 VCEQLEEKIGGKVIYRRG 319
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific OS=Homo sapiens GN=NSD1 PE=1 SV=1 Length = 2696
Score = 34.7 bits (78), Expect = 0.32 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +2
Query: 212 AITPFEGRPAHRQFPVLSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTE 355 AI FEGR + PVL + K+ + Y H + +KI+S+ G+ E Sbjct: 382 AIVMFEGRHQFEELPVLRRRGKQKEKGYRHKVPQKILSKWEASVGLAE 429
>sp|Q63ZL2|HOP2_XENLA Homologous-pairing protein 2 homolog OS=Xenopus laevis GN=psmc3ip PE=2 SV=1 Length = 214
Score = 31.6 bits (70), Expect = 2.7 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = +2
Query: 248 QFPVLSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILK-LKVLDN 424 QFP +S E KDL A L K+ S Q ES K ++ +L +E+LK + L Sbjct: 74 QFPSVSDSELKDLDAQVTELSSKLQSSQ-QSCRQLESELKDLTSSLTTEEMLKEVSCLKE 132
Query: 425 CPDELEVVISKIEEAT 472 D E ++ I+ AT Sbjct: 133 ECDRHEHKLTNIKSAT 148
>sp|Q5VMQ5|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0495900 PE=2 SV=1 Length = 701
Score = 31.6 bits (70), Expect = 2.7 Identities = 18/83 (21%), Positives = 40/83 (48%) Frame = +2
Query: 239 AHRQFPVLSPKEKKDLRAYAHSLGKKIVSQQIGKAGVTESLAKAVSDALEAKEILKLKVL 418 A R+ + P K+++ + K IG+ G+T ++ + + + K + K+K Sbjct: 175 ASREEVLGEPLTKEEVDELVKATLKTKRQLNIGRDGLTHNMLENIHSHWKRKRVCKIKCK 234
Query: 419 DNCPDELEVVISKIEEATQGQVV 487 C +++ V ++EE G+V+ Sbjct: 235 GVCTVDMDNVCQQLEEKVGGKVI 257
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6T8H1 |
Definition |
tr|B6T8H1|B6T8H1_MAIZE CRS1 / YhbY domain containing protein OS=Zea mays |
Align length |
82 |
Score (bit) |
91.7 |
E-value |
2.0e-17 |
Report |
|