DK955229 |
Clone id |
TST39A01NGRL0022_I15 |
Library |
TST39 |
Length |
551 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_I15. 5' end sequence. |
Accession |
DK955229 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4263Contig1 |
Sequence |
GTCTCCTGCGCGAAGTGAAGGCTGATCTCTGCAGTGAACGCACATGTATACAACTTAGCG AGCCTCTATTTTATACAAAACGCCTAATGGCTGCAGAACGGGAGCCAGTAGAAGTTGCAT TACTGTAGGAGATCCCGCGTGCCCGAGGACCTGGTCTTGCTGCGGAGCGACGGCAGTGTC CTGATAATCGATCTGTCCAAGATTGAACCACACCCATACTCTTACAGTATTTGTAGAAAA TTGTGGTAGCCTACATCTTACACCAAGCAGCCATGAGTGGACACGATTCAAAATACTTTT CTACCACAAAGAAGGGAGAAATCCCCGAGCTTAAGGAAGAGCTCAATTCACAGTACAAGG ACAAAAAGAAAGATGCTGTGAAGAAGGTGATAGCAGCAATGACAGTGGGGAAGGATGTTT CCATGCTTTTCACAGATGTGGTGAATTGCATGCAAACTGAGAATCTCGAATTGAAGAAGC TTGTGTATCTGTACCTCATCAACTATGCAAAAAGCCAGCCTGATCTTGCCATTCTTGCAG TCAACACCTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P52303 |
Definition |
sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus |
Align length |
89 |
Score (bit) |
124.0 |
E-value |
4.0e-28 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SUS3 |
Definition |
tr|Q9SUS3|Q9SUS3_ARATH Beta-adaptin-like protein (At4g11380) OS=Arabidopsis thaliana |
Align length |
93 |
Score (bit) |
152.0 |
E-value |
1.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955229|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_I15, 5' (551 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9SUS3|Q9SUS3_ARATH Beta-adaptin-like protein (At4g11380) OS=... 152 1e-35 tr|Q9M650|Q9M650_ARATH Beta-adaptin-like protein B OS=Arabidopsi... 152 1e-35 tr|Q8VZF2|Q8VZF2_ARATH AT4g23460/F16G20_160 OS=Arabidopsis thali... 152 1e-35 tr|Q10LA0|Q10LA0_ORYSJ Adapter-related protein complex 1 beta 1 ... 152 1e-35 tr|O81742|O81742_ARATH Beta adaptin-like protein OS=Arabidopsis ... 152 1e-35 tr|B8APS8|B8APS8_ORYSI Putative uncharacterized protein OS=Oryza... 152 1e-35 tr|B2WSA1|B2WSA1_9BRAS Putative beta-adaptin OS=Capsella rubella... 152 1e-35 tr|A7QNL1|A7QNL1_VITVI Chromosome chr2 scaffold_132, whole genom... 152 1e-35 tr|B8LNI5|B8LNI5_PICSI Putative uncharacterized protein OS=Picea... 149 7e-35 tr|A9TVR6|A9TVR6_PHYPA Predicted protein OS=Physcomitrella paten... 146 6e-34 tr|A9TPL0|A9TPL0_PHYPA Predicted protein OS=Physcomitrella paten... 146 6e-34 tr|A9S2H0|A9S2H0_PHYPA Predicted protein OS=Physcomitrella paten... 146 6e-34 tr|Q9M649|Q9M649_ARATH Beta-adaptin-like protein C (Fragment) OS... 146 8e-34 tr|Q0DRT9|Q0DRT9_ORYSJ Os03g0355600 protein (Fragment) OS=Oryza ... 146 8e-34 tr|Q4RT04|Q4RT04_TETNG Chromosome 12 SCAF14999, whole genome sho... 124 4e-27 tr|B2GUA2|B2GUA2_XENTR LOC100158536 protein OS=Xenopus tropicali... 124 4e-27 tr|A5PMT0|A5PMT0_DANRE Novel protein similar to vertebrate adapt... 124 4e-27 tr|A5PMS9|A5PMS9_DANRE Novel protein similar to vertebrate adapt... 124 4e-27 tr|A1L2H5|A1L2H5_XENLA LOC100036849 protein OS=Xenopus laevis GN... 124 4e-27 tr|Q8CC13|Q8CC13_MOUSE Putative uncharacterized protein OS=Mus m... 124 4e-27 tr|Q5SVG5|Q5SVG5_MOUSE Adaptor protein complex AP-1, beta 1 subu... 124 4e-27 tr|Q5SVG4|Q5SVG4_MOUSE Adaptor protein complex AP-1, beta 1 subu... 124 4e-27 tr|Q3U1K9|Q3U1K9_MOUSE Putative uncharacterized protein OS=Mus m... 124 4e-27 tr|Q3TXG4|Q3TXG4_MOUSE Putative uncharacterized protein OS=Mus m... 124 4e-27 tr|Q3TVN4|Q3TVN4_MOUSE Putative uncharacterized protein OS=Mus m... 124 4e-27 tr|Q2KJB2|Q2KJB2_BOVIN Adaptor-related protein complex 1, beta 1... 124 4e-27 tr|Q9N4F3|Q9N4F3_CAEEL APB-1 protein, isoform a OS=Caenorhabditi... 124 4e-27 tr|Q7YZG9|Q7YZG9_CAEEL APB-1 protein, isoform b OS=Caenorhabditi... 124 4e-27 tr|Q7YZG8|Q7YZG8_CAEEL APB-1 protein, isoform c OS=Caenorhabditi... 124 4e-27 tr|A8X9Q7|A8X9Q7_CAEBR CBR-APB-1 protein OS=Caenorhabditis brigg... 124 4e-27
>tr|Q9SUS3|Q9SUS3_ARATH Beta-adaptin-like protein (At4g11380) OS=Arabidopsis thaliana GN=AT4g11380 PE=2 SV=1 Length = 894
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|Q9M650|Q9M650_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana PE=2 SV=1 Length = 894
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|Q8VZF2|Q8VZF2_ARATH AT4g23460/F16G20_160 OS=Arabidopsis thaliana PE=2 SV=1 Length = 893
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|Q10LA0|Q10LA0_ORYSJ Adapter-related protein complex 1 beta 1 subunit, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g23950 PE=4 SV=1 Length = 896
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|O81742|O81742_ARATH Beta adaptin-like protein OS=Arabidopsis thaliana GN=F16G20.160 PE=2 SV=1 Length = 719
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|B8APS8|B8APS8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11602 PE=4 SV=1 Length = 896
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|B2WSA1|B2WSA1_9BRAS Putative beta-adaptin OS=Capsella rubella GN=6J23.22 PE=4 SV=1 Length = 893
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|A7QNL1|A7QNL1_VITVI Chromosome chr2 scaffold_132, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002570001 PE=4 SV=1 Length = 903
Score = 152 bits (383), Expect = 1e-35 Identities = 78/93 (83%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELKEELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|B8LNI5|B8LNI5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 903
Score = 149 bits (377), Expect = 7e-35 Identities = 76/93 (81%), Positives = 78/93 (83%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHDSKYFSTTKKGEIPELK+ELNSQY MTVGKDVS LFTDVVNCM Sbjct: 1 MSGHDSKYFSTTKKGEIPELKDELNSQYKDKKKDAVKKVIAAMTVGKDVSSLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QT+NLELKKLVYLYLINYAKSQPDLAILAVNTF Sbjct: 61 QTDNLELKKLVYLYLINYAKSQPDLAILAVNTF 93
>tr|A9TVR6|A9TVR6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_225918 PE=4 SV=1 Length = 899
Score = 146 bits (369), Expect = 6e-34 Identities = 75/93 (80%), Positives = 77/93 (82%) Frame = +3
Query: 273 MSGHDSKYFSTTKKGEIPELKEELNSQYXXXXXXXXXXXXXXMTVGKDVSMLFTDVVNCM 452 MSGHD+KYF+TTKKGEI ELKEELNSQY MTVGKDVSMLFTDVVNCM Sbjct: 1 MSGHDAKYFTTTKKGEIHELKEELNSQYKDKKKDAVKKVIAAMTVGKDVSMLFTDVVNCM 60
Query: 453 QTENLELKKLVYLYLINYAKSQPDLAILAVNTF 551 QTENLELKKLVYLYLINYAKS PDLAILAVNTF Sbjct: 61 QTENLELKKLVYLYLINYAKSHPDLAILAVNTF 93
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