DK955232 |
Clone id |
TST39A01NGRL0022_I18 |
Library |
TST39 |
Length |
555 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_I18. 5' end sequence. |
Accession |
DK955232 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GAGCTTGCTGTTCATGGCGCACGGCATTGCATGCCAGAAGATCGTTGGCTCTTATGTGGG CACTCCCAGTGACATTTGTTCTTCGAGCAATGCTGGAAACCTTTATAGAGGACAGCTGCC GCTATTTTCAAAGGCACAGGCTATGGCCAGGGAAAGCCATTGTGGGTATGTCGTACCATC AATGAATAAAGAGAGCTGCAACTTTTTTACAAAGCAGAAATTCAAGACTCAGAGAGTACC TGTAAGGTTAGTGGACGGCATGAAAACACAGAATGCACGAAGACTTAACATCGAAGCGGC TAGAAGGGAGCCCATCTCGCAAGCACAGCGGAATGCCGAGCTCGAAGAGGAGGCAAAGAA GATTGATCTTGCGCCTCACAAGCTCTTGGAAAGGGGAGAGCCTGGTACCATGCAGGGCAT CATTAAGGATGTGATTCCAGTAGGCTACTTTATTACTCTTCCTAATGGGAAAGATGGGTA CCTGCCTGCCCTTGATTTAGGGTTCACAGGGGGCATTATCATTCTAGAGCGCCTTTTCAA AGTAGGGCAAGAGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3AM38 |
Definition |
sp|Q3AM38|PNP_SYNSC Polyribonucleotide nucleotidyltransferase OS=Synechococcus sp. (strain CC9605) |
Align length |
103 |
Score (bit) |
33.1 |
E-value |
0.93 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B3QSU3 |
Definition |
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) |
Align length |
99 |
Score (bit) |
39.3 |
E-value |
0.14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955232|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_I18, 5' (555 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th... 39 0.14 tr|A8F7S1|A8F7S1_THELT RNA binding S1 domain protein OS=Thermoto... 39 0.14 tr|Q2RLT1|Q2RLT1_MOOTA Ribonuclease R OS=Moorella thermoacetica ... 38 0.41 tr|B5ERQ6|B5ERQ6_ACIF5 P-type conjugative transfer protein TrbL ... 37 0.54 tr|B5EKP7|B5EKP7_ACIF5 P-type conjugative transfer protein TrbL ... 37 0.54 tr|B7JAY1|B7JAY1_THIFE Conjugal transfer protein trbL, putative ... 37 0.54 tr|Q1MQB8|Q1MQB8_LAWIP Ribosomal protein S1 OS=Lawsonia intracel... 36 1.2 tr|Q2R2W5|Q2R2W5_ORYSJ Retrotransposon protein, putative, unclas... 36 1.2 tr|Q01L49|Q01L49_ORYSA H0502B11.2 protein OS=Oryza sativa GN=H05... 35 2.0 tr|Q95R61|Q95R61_DROME SD04909p OS=Drosophila melanogaster GN=In... 35 3.5 tr|B5CPU6|B5CPU6_9FIRM Putative uncharacterized protein OS=Rumin... 34 4.6 tr|B2EJI0|B2EJI0_9BACT Ribonuclease R OS=bacterium Ellin514 GN=C... 34 4.6 tr|A3YPK7|A3YPK7_CAMJE Polyribonucleotide nucleotidyltransferase... 34 4.6 tr|Q75ID0|Q75ID0_ORYSJ Putative gypsy type transposon protein (R... 34 4.6 tr|Q2QP54|Q2QP54_ORYSJ Elongation factor Ts OS=Oryza sativa subs... 34 4.6 tr|A2ZLC1|A2ZLC1_ORYSI Elongation factor Ts OS=Oryza sativa subs... 34 4.6 tr|B1X3J9|B1X3J9_PAUCH Polyribonucleotide nucleotidyltransferase... 34 4.6 tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo... 34 6.0 tr|B2RZJ3|B2RZJ3_BORHD SSU ribosomal protein S1P OS=Borrelia her... 34 6.0 tr|A3JBY3|A3JBY3_9ALTE Putative uncharacterized protein OS=Marin... 34 6.0 tr|Q6AVG9|Q6AVG9_ORYSJ Putative uncharacterized protein OSJNBa00... 34 6.0 tr|Q10FK4|Q10FK4_ORYSJ Retrotransposon protein, putative, unclas... 34 6.0 tr|Q01JT4|Q01JT4_ORYSA H0505F09.7 protein (OSIGBa0093K19.1 prote... 34 6.0 tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P OS=Prosthecochl... 33 7.8 tr|B6Y0Q5|B6Y0Q5_ANATH Ribonuclease R OS=Anaerocellum thermophil... 33 7.8 tr|Q9AUL5|Q9AUL5_ORYSA Putative uncharacterized protein OSJNBa00... 33 7.8 tr|Q94I60|Q94I60_ORYSJ Putative uncharacterized protein OSJNBa00... 33 7.8 tr|Q7XS77|Q7XS77_ORYSJ OSJNBa0020I02.3 protein OS=Oryza sativa s... 33 7.8 tr|Q7XP72|Q7XP72_ORYSJ OSJNBa0019D11.10 protein OS=Oryza sativa ... 33 7.8 tr|Q7XP08|Q7XP08_ORYSJ OSJNBb0013J13.12 protein OS=Oryza sativa ... 33 7.8
>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4 SV=1 Length = 616
Score = 39.3 bits (90), Expect = 0.14 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 16/99 (16%) Frame = +2
Query: 305 REPISQAQRNAELEEEAKKIDLAPHKLL---ERGEP------------GT-MQGIIKDVI 436 R P ++N EL+ + K D+ ++ ++ EP GT +G I +I Sbjct: 431 RHPSEIVKKNQELDVKVLKFDVKARRIALGHKQIEPDPWSDFENDYAVGTETKGKIAQII 490
Query: 437 PVGYFITLPNGKDGYLPALDLGFTGGIIILERLFKVGQE 553 G + LP+G DG++PA L GG+ + FKVG E Sbjct: 491 EKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDE 528
>tr|A8F7S1|A8F7S1_THELT RNA binding S1 domain protein OS=Thermotoga lettingae (strain ATCC BAA-301 / DSM 14385 / TMO) GN=Tlet_1651 PE=4 SV=1 Length = 539
Score = 39.3 bits (90), Expect = 0.14 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = +2
Query: 380 KLLERGEPGTM-QGIIKDVIPVGYFITLPNGKDGYLPALDLGFTGGIIILERLFKVGQ 550 K+ ER GT+ QG +K ++P G F+ L G DG + ++ +T L + FK+GQ Sbjct: 266 KVSERYSVGTVVQGTVKSIMPFGIFLNLEPGLDGLIHISEVFWTSKKADLHKYFKIGQ 323
>tr|Q2RLT1|Q2RLT1_MOOTA Ribonuclease R OS=Moorella thermoacetica (strain ATCC 39073) GN=Moth_0273 PE=3 SV=1 Length = 770
Score = 37.7 bits (86), Expect = 0.41 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = +2
Query: 320 QAQRNAELEEEAKK--IDLAPHKLLERGEPGTMQGIIKDVIPVGYFITLPNGKDG 478 QA +L EEA++ +D+ + +ER T G+I V+P G+F+ L N +G Sbjct: 593 QASEREKLAEEAERESLDMKKVQYMERHVGATFAGVISGVVPYGFFVELENTVEG 647
>tr|B5ERQ6|B5ERQ6_ACIF5 P-type conjugative transfer protein TrbL OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=Lferr_1343 PE=3 SV=1 Length = 589
Score = 37.4 bits (85), Expect = 0.54 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +2
Query: 377 HKLLERGEPGTMQGIIKDVIPVGYFITLPNGKDGYLPALDLGFTGG 514 H L +RG GIIK V+ +G+F+TL + ++P + G GG Sbjct: 71 HVLQKRGHEDLFAGIIKKVVTLGFFLTLLDNSGTWIPDIINGLAGG 116
>tr|B5EKP7|B5EKP7_ACIF5 P-type conjugative transfer protein TrbL OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=Lferr_0251 PE=3 SV=1 Length = 563
Score = 37.4 bits (85), Expect = 0.54 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +2
Query: 377 HKLLERGEPGTMQGIIKDVIPVGYFITLPNGKDGYLPALDLGFTGG 514 H L +RG GIIK V+ +G+F+TL + ++P + G GG Sbjct: 71 HVLQKRGHEDLFAGIIKKVVTLGFFLTLLDNSGTWIPDIINGLAGG 116
>tr|B7JAY1|B7JAY1_THIFE Conjugal transfer protein trbL, putative OS=Acidithiobacillus ferrooxidans ATCC 23270 GN=AFE_1642 PE=4 SV=1 Length = 589
Score = 37.4 bits (85), Expect = 0.54 Identities = 17/46 (36%), Positives = 26/46 (56%) Frame = +2
Query: 377 HKLLERGEPGTMQGIIKDVIPVGYFITLPNGKDGYLPALDLGFTGG 514 H L +RG GIIK V+ +G+F+TL + ++P + G GG Sbjct: 71 HVLQKRGHEDLFAGIIKKVVTLGFFLTLLDNSGTWIPDIINGLAGG 116
>tr|Q1MQB8|Q1MQB8_LAWIP Ribosomal protein S1 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=lytB PE=4 SV=1 Length = 574
Score = 36.2 bits (82), Expect = 1.2 Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 9/78 (11%) Frame = +2
Query: 341 LEEEAKKIDLA-------PHKLL-ERGEPGT-MQGIIKDVIPVGYFITLPNGKDGYLPAL 493 ++++ K+I L P +L+ E+ GT ++G++K++ G FI + +G DG + Sbjct: 350 IDQDKKRISLGMKQVKPNPWELVGEKYPEGTILEGVVKNITEFGMFIGIEDGIDGLIHVS 409
Query: 494 DLGFTGGIIILERLFKVG 547 D+ +T + LFKVG Sbjct: 410 DISWTKKVRHPNELFKVG 427
>tr|Q2R2W5|Q2R2W5_ORYSJ Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os11g34420 PE=4 SV=1 Length = 834
Score = 36.2 bits (82), Expect = 1.2 Identities = 20/44 (45%), Positives = 27/44 (61%) Frame = +2
Query: 248 LVDGMKTQNARRLNIEAARREPISQAQRNAELEEEAKKIDLAPH 379 L + + + ARR N+E AR E +Q QR AELE AK++D H Sbjct: 595 LREAAREEQARR-NLEGARAERAAQDQRAAELEARAKELDARAH 637
>tr|Q01L49|Q01L49_ORYSA H0502B11.2 protein OS=Oryza sativa GN=H0502B11.2 PE=4 SV=1 Length = 744
Score = 35.4 bits (80), Expect = 2.0 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 6/58 (10%) Frame = +2
Query: 224 KTQRVPVRLVDGM------KTQNARRLNIEAARREPISQAQRNAELEEEAKKIDLAPH 379 K + V RL D + + + ARR N+E AR E + QR AELE AK++D H Sbjct: 683 KAEAVAQRLADSLFLREAAREEQARR-NLEGARAERATLDQRAAELEARAKELDARAH 739
>tr|Q95R61|Q95R61_DROME SD04909p OS=Drosophila melanogaster GN=Incenp PE=2 SV=1 Length = 310
Score = 34.7 bits (78), Expect = 3.5 Identities = 27/111 (24%), Positives = 53/111 (47%) Frame = +2
Query: 62 TPSDICSSSNAGNLYRGQLPLFSKAQAMARESHCGYVVPSMNKESCNFFTKQKFKTQRVP 241 T + S N+G+ +R L ++ + RE + + +E+ K++ + +R+ Sbjct: 92 TSTKTLSRENSGDDFRKGLHNLAEERKKLREQK--HQQAAQQREA-----KERERAERMA 144
Query: 242 VRLVDGMKTQNARRLNIEAARREPISQAQRNAELEEEAKKIDLAPHKLLER 394 + K Q R+ IE +R+ + + QR +EEA+ + A HK LE+ Sbjct: 145 KLAAERAKKQEERK-RIEERKRQELEELQRKMRQQEEAEALKKAKHKELEQ 194
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