DK955247 |
Clone id |
TST39A01NGRL0022_J09 |
Library |
TST39 |
Length |
493 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_J09. 5' end sequence. |
Accession |
DK955247 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL31Contig1 |
Sequence |
GAGGCTAAGTACAAGCTATGCAAGGTCCGAGCTGCCTGCTGCGGCGAGAAGGGGATTCCC TACATCACTACATTTGATGGGCGCACCATTCGCTATCCAGATCCCCTTATCAAGGCCAAT GACACCATTAAAATTGAAATTGAGACTGGAAAGGTTGTAGAGTTCATCAAGTTTGACATT GGCAACATTGTTATGGTTACTGGAGGTCGAAACAGAGGCAGAATTGGGATTCTCAAGCAC CGTGAAAAGCATAAGGGAAGTTTTGAAATTGTGCACGTACAAGATGCTGCTGGTCAAGAG TTTGCCACCCGGCTTGGCAATGTGTTTACTATTGGTAAAGGAAGCAAGCCTTGGGTGACT CTACCGAGAGGCAAGGGTATTAAGCTGTCTATTGTTGAAGAAGCCAAGAAGAAAGCAGGA GCTCTGAAGGGAACTGTGGCTTGAGTTTCTTTTTTGAGCAGGCTTCTCTTTTTCAGATTG ATGCTCCCTTTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O81363 |
Definition |
sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca |
Align length |
134 |
Score (bit) |
231.0 |
E-value |
1.0e-60 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955247|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_J09, 5' (493 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca... 231 1e-60 sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsut... 230 2e-60 sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa sub... 229 7e-60 sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis t... 228 1e-59 sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4... 228 2e-59 sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis t... 228 2e-59 sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis t... 228 2e-59 sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosu... 226 3e-59 sp|Q6PBC4|RS4_XENTR 40S ribosomal protein S4 OS=Xenopus tropical... 203 4e-52 sp|P49401|RS4_XENLA 40S ribosomal protein S4 OS=Xenopus laevis G... 203 4e-52 sp|P47961|RS4_CRIGR 40S ribosomal protein S4 OS=Cricetulus grise... 202 5e-52 sp|P47836|RS4_CHICK 40S ribosomal protein S4 OS=Gallus gallus GN... 202 5e-52 sp|P79103|RS4_BOVIN 40S ribosomal protein S4 OS=Bos taurus GN=RP... 202 5e-52 sp|P62703|RS4X_RAT 40S ribosomal protein S4, X isoform OS=Rattus... 202 5e-52 sp|P62702|RS4X_MOUSE 40S ribosomal protein S4, X isoform OS=Mus ... 202 5e-52 sp|P62704|RS4X_MESAU 40S ribosomal protein S4, X isoform OS=Meso... 202 5e-52 sp|Q76MY1|RS4X_MACFU 40S ribosomal protein S4, X isoform OS=Maca... 202 5e-52 sp|P62701|RS4X_HUMAN 40S ribosomal protein S4, X isoform OS=Homo... 202 5e-52 sp|P62705|RS4X_FELCA 40S ribosomal protein S4, X isoform OS=Feli... 202 5e-52 sp|Q76N24|RS4X_CERAE 40S ribosomal protein S4, X isoform OS=Cerc... 202 5e-52 sp|O62738|RS4X_MONDO 40S ribosomal protein S4, X isoform OS=Mono... 201 2e-51 sp|Q642H9|RS4X_DANRE 40S ribosomal protein S4, X isoform OS=Dani... 201 2e-51 sp|O62739|RS4Y1_MONDO 40S ribosomal protein S4, Y isoform 1 OS=M... 200 3e-51 sp|Q90YS0|RS4_ICTPU 40S ribosomal protein S4 OS=Ictalurus puncta... 200 3e-51 sp|Q861U7|RS4Y1_PONPY 40S ribosomal protein S4, Y isoform 1 OS=P... 195 1e-49 sp|P22090|RS4Y1_HUMAN 40S ribosomal protein S4, Y isoform 1 OS=H... 194 2e-49 sp|P79183|RS4Y1_MACFU 40S ribosomal protein S4, Y isoform 1 OS=M... 193 4e-49 sp|Q861U8|RS4Y1_GORGO 40S ribosomal protein S4, Y isoform 1 OS=G... 193 4e-49 sp|Q861U9|RS4Y1_PANTR 40S ribosomal protein S4, Y isoform 1 OS=P... 191 1e-48 sp|Q861V0|RS4Y1_PANPA 40S ribosomal protein S4, Y isoform 1 OS=P... 191 1e-48
>sp|O81363|RS4_PRUAR 40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1 Length = 261
Score = 231 bits (589), Expect = 1e-60 Identities = 103/134 (76%), Positives = 125/134 (93%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 E+K+KLCKVR+ G+KGIPYI T+DGRTIRYPDPLIKANDTIK+++ET K+ +FIKFD+ Sbjct: 114 ESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDV 173
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRNRGR+G++K+REKHKGSFE +HVQDA G EFATRLGNVFTIGKG+KPWV+ Sbjct: 174 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVS 233
Query: 361 LPRGKGIKLSIVEE 402 LP+GKGIKL+I+EE Sbjct: 234 LPKGKGIKLTILEE 247
>sp|P46299|RS4_GOSHI 40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1 Length = 262
Score = 230 bits (587), Expect = 2e-60 Identities = 103/134 (76%), Positives = 125/134 (93%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 E K+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDTIK+++E+ K+V+FIKFD+ Sbjct: 118 ETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDV 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRNRGR+G++K+REKHKGSFE +HVQDAAG EFATRLGNVFTIGKG+KPWV+ Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVS 237
Query: 361 LPRGKGIKLSIVEE 402 LP+ KGIKLSI+EE Sbjct: 238 LPKRKGIKLSIIEE 251
>sp|P49398|RS4_ORYSJ 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3 Length = 265
Score = 229 bits (583), Expect = 7e-60 Identities = 101/134 (75%), Positives = 125/134 (93%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 +AK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDP+IKANDTIKI++ET K+V+FIKFD+ Sbjct: 118 DAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDV 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRN GR+G++K+REKHKGSFE +HV+DA G +FATRLGNVFTIGKG+KPWV+ Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVS 237
Query: 361 LPRGKGIKLSIVEE 402 LP+GKGIKLSI+EE Sbjct: 238 LPKGKGIKLSIIEE 251
>sp|Q8VYK6|RS43_ARATH 40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2 Length = 262
Score = 228 bits (581), Expect = 1e-59 Identities = 100/134 (74%), Positives = 124/134 (92%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 EAK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDTIK+++E K+VEFIKFD+ Sbjct: 118 EAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDV 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRNRGR+G++K+REKHKGSFE +H+QD+ G EFATRLGNV+TIGKG+KPWV+ Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 361 LPRGKGIKLSIVEE 402 LP+GKGIKL+I+EE Sbjct: 238 LPKGKGIKLTIIEE 251
>sp|O22424|RS4_MAIZE 40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1 Length = 265
Score = 228 bits (580), Expect = 2e-59 Identities = 100/134 (74%), Positives = 125/134 (93%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 +AK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDTIKI++ET K+V+FIKFD+ Sbjct: 118 DAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDV 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRN GR+G++K+REKHKGSFE +HV+D+ G +FATR+GNVFTIGKG+KPWV+ Sbjct: 178 GNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVS 237
Query: 361 LPRGKGIKLSIVEE 402 LP+GKGIKLSI+EE Sbjct: 238 LPKGKGIKLSIIEE 251
>sp|P49204|RS42_ARATH 40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4 Length = 262
Score = 228 bits (580), Expect = 2e-59 Identities = 100/134 (74%), Positives = 124/134 (92%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 EAK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDTIK+++E K+VEFIKFD+ Sbjct: 118 EAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDV 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRNRGR+G++K+REKHKGSFE +H+QD+ G EFATRLGNV+TIGKG+KPWV+ Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 361 LPRGKGIKLSIVEE 402 LP+GKGIKL+I+EE Sbjct: 238 LPKGKGIKLTIIEE 251
>sp|Q93VH9|RS41_ARATH 40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1 Length = 261
Score = 228 bits (580), Expect = 2e-59 Identities = 100/134 (74%), Positives = 124/134 (92%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 EAK+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIK NDTIK+++E K+VEFIKFD+ Sbjct: 118 EAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDV 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRNRGR+G++K+REKHKGSFE +H+QD+ G EFATRLGNV+TIGKG+KPWV+ Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVS 237
Query: 361 LPRGKGIKLSIVEE 402 LP+GKGIKL+I+EE Sbjct: 238 LPKGKGIKLTIIEE 251
>sp|P46300|RS4_SOLTU 40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1 Length = 264
Score = 226 bits (577), Expect = 3e-59 Identities = 98/134 (73%), Positives = 126/134 (94%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 E+K+KLCKVR+ G+KGIPY+ T+DGRTIRYPDPLIKANDTIK+++E+ K+V+FIKFD+ Sbjct: 118 ESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDV 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+VMVTGGRNRGR+G++K+REKHKGSFE +H+QD+ G EFATRLGNVFT+GKG+KPWV+ Sbjct: 178 GNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVS 237
Query: 361 LPRGKGIKLSIVEE 402 LP+GKGIKL+I+E+ Sbjct: 238 LPKGKGIKLTIIED 251
>sp|Q6PBC4|RS4_XENTR 40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3 Length = 263
Score = 203 bits (516), Expect = 4e-52 Identities = 91/134 (67%), Positives = 112/134 (83%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 EAKYKLCKVR G KGIP++ T D RTIRYPDPLIK NDTI+I++ETGK+ +FIKFD Sbjct: 118 EAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDT 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+ MVTGG N GRIG++ +RE+H GSF++VHV+DA G FATRL N+F IGKG+KPW++ Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWIS 237
Query: 361 LPRGKGIKLSIVEE 402 LPRGKGI+L+I EE Sbjct: 238 LPRGKGIRLTIAEE 251
>sp|P49401|RS4_XENLA 40S ribosomal protein S4 OS=Xenopus laevis GN=rps4 PE=2 SV=4 Length = 263
Score = 203 bits (516), Expect = 4e-52 Identities = 91/134 (67%), Positives = 112/134 (83%) Frame = +1
Query: 1 EAKYKLCKVRAACCGEKGIPYITTFDGRTIRYPDPLIKANDTIKIEIETGKVVEFIKFDI 180 EAKYKLCKVR G KGIP++ T D RTIRYPDPLIK NDTI+I++ETGK+ +FIKFD Sbjct: 118 EAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDT 177
Query: 181 GNIVMVTGGRNRGRIGILKHREKHKGSFEIVHVQDAAGQEFATRLGNVFTIGKGSKPWVT 360 GN+ MVTGG N GRIG++ +RE+H GSF++VHV+DA G FATRL N+F IGKG+KPW++ Sbjct: 178 GNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNNFATRLSNIFVIGKGNKPWIS 237
Query: 361 LPRGKGIKLSIVEE 402 LPRGKGI+L+I EE Sbjct: 238 LPRGKGIRLTIAEE 251
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S0Q0 |
Definition |
tr|A9S0Q0|A9S0Q0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
134 |
Score (bit) |
245.0 |
E-value |
7.0e-64 |
Report |
|