DK955255 |
Clone id |
TST39A01NGRL0022_J17 |
Library |
TST39 |
Length |
785 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_J17. 5' end sequence. |
Accession |
DK955255 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL241Contig1 |
Sequence |
ATCAGATGCAGCTGCAAGGGCCAAGGAATCTGCCAAGGACATTGTGAATGTGAAAGCCCT GATTGACAAGAAGGCCTGGCCATATGTGCAAAATGACTTGCGCCTCAAGGCATCCTACCT TCGCTTCGACATCAACACTGTGATTGCCTCGAAAAGCAAGGCGGAGAAGAAGGCTTTGAA GCCCCTTGTGGACAAGCTCTTCGATGAGATTAACAATCTTGATTACGCAGCCAGAAGTAA GAGTGTCCCCAATGCAAACAAGTACTACTCGACGACTGTATCATCGTTGAATGACGTGCT GGCAAAACTTGGTTGAGTGCTGGCCTCAAGAATCTGCCACCATGATGCTATTGTAATTGT GCGATTATGCTTTCCTAAGGAGCTCATACTTCTGTTCTTTGAAAAGTGCGGCACATATAA TCTTAACGCAATCCCGGGTCCTCGTGAGATTGTTCTTCTTCCTGTTTTANNAAAAAGAAT TATAAAATAAAAAATGCCCTTAAAGAAATCTTTGTGGGAATAAAAGGGCGCCCCCCCAAC TTTTCTTTGTAAAAGTGGGGATTTAAAGAAAAACATTTTCTTTTTCAATTTTTTTTGACC AAAAAGGGCCCTTTTCCTTTCAAAAAAAAAAATTTTTTTTTTCCCCCCCGGCCGGAAATC CCCCCAAAAGGGGGTTCGTATTTAACTGGGGGCCAAAGGTTGTTTTCCCGGGGACCCTCC TGGGCCCCCGGTGTCTCAAAAAATTCTTTGGAAGGTTTTCCTTTTCCGCCCAAAAAAAAA AAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q41932 |
Definition |
sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana |
Align length |
104 |
Score (bit) |
140.0 |
E-value |
1.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK955255|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0022_J17, 5' (771 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chlo... 140 1e-32 sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chlo... 135 3e-31 sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chlo... 120 8e-27 sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chlo... 119 2e-26 sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chlorop... 114 6e-25 sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chlorop... 113 1e-24 sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chlorop... 113 1e-24 sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chlorop... 100 1e-20 sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer protein 3, chlorop... 44 0.001 sp|Q41643|PSBQ_VOLCA Oxygen-evolving enhancer protein 3, chlorop... 41 0.006 sp|Q65QD4|ILVD_MANSM Dihydroxy-acid dehydratase OS=Mannheimia su... 37 0.12 sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1 33 1.7 sp|Q2IIW6|LIPA_ANADE Lipoyl synthase OS=Anaeromyxobacter dehalog... 31 8.7 sp|Q8RLE0|KITH_MYCGA Thymidine kinase OS=Mycoplasma gallisepticu... 31 8.7 sp|P53156|YGI1_YEAST Uncharacterized protein YGL081W OS=Saccharo... 31 8.7
>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2 Length = 230
Score = 140 bits (352), Expect = 1e-32 Identities = 71/104 (68%), Positives = 83/104 (79%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++AAARAK+SAK+I+NVK+ IDKKAWPYVQNDLRL+ASYLR+D+NTVI Sbjct: 127 TEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVISAKPKEEKQSLK 186
Query: 182 PLVDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 L KLF I+NLDYAARSKS P+A KYYS TVSSLN+VLAKLG Sbjct: 187 DLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230
>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3 Length = 224
Score = 135 bits (340), Expect = 3e-31 Identities = 68/104 (65%), Positives = 80/104 (76%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++AAARAKESAKDI+NVK LID+KAWPYVQNDLR KASYLR+D+NT+I Sbjct: 121 TEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPKDEKKSLK 180
Query: 182 PLVDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 L KLFD I+NLDYAA+ KS A KYY+ TVS+LN+VLAKLG Sbjct: 181 DLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224
>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1 Length = 217
Score = 120 bits (301), Expect = 8e-27 Identities = 60/104 (57%), Positives = 75/104 (72%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++AAAR K SA+DI+N+K LIDKKAWPYVQNDLRL+ASYLR+D+ TVI Sbjct: 114 AEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLK 173
Query: 182 PLVDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 L KLF I++LD+AA+ KS P A KY++ T +L DVLAKLG Sbjct: 174 ELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217
>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1 Length = 213
Score = 119 bits (298), Expect = 2e-26 Identities = 59/104 (56%), Positives = 74/104 (71%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++A AR K SA+DI+N+K LIDKKAWPYVQNDLRL+ASYLR+D+ TVI Sbjct: 110 AEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIASKPKEEKKSLK 169
Query: 182 PLVDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 L KLF I++LD+AA+ KS P A KY++ T +L DVLAKLG Sbjct: 170 ELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKLG 213
>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1 Length = 232
Score = 114 bits (285), Expect = 6e-25 Identities = 58/104 (55%), Positives = 73/104 (70%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++AA RAK SA +I+NVK ID+KAWP +QNDLRL+ASYLR+D+ TVI Sbjct: 129 TEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQ 188
Query: 182 PLVDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 L KLF I+NLD+AA+ KS A KYY TVS++N+VLAKLG Sbjct: 189 ELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 232
>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1 Length = 217
Score = 113 bits (283), Expect = 1e-24 Identities = 58/104 (55%), Positives = 75/104 (72%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++AAARAKESA+DI+N+K LI+KK WP+V++DLRL+ASYLR+D+ TVI Sbjct: 114 AEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLK 173
Query: 182 PLVDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 L KLF I+ LD+AA+ KS A KYY+ T S+L DVLAKLG Sbjct: 174 DLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217
>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2 Length = 217
Score = 113 bits (283), Expect = 1e-24 Identities = 58/104 (55%), Positives = 75/104 (72%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++AAARAKESA+DI+N+K LI+KK WP+V++DLRL+ASYLR+D+ TVI Sbjct: 114 AEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVINSKPKDEKKGLK 173
Query: 182 PLVDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 L KLF I+ LD+AA+ KS A KYY+ T S+L DVLAKLG Sbjct: 174 DLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217
>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1 Length = 231
Score = 100 bits (248), Expect = 1e-20 Identities = 55/105 (52%), Positives = 70/105 (66%), Gaps = 1/105 (0%) Frame = +2
Query: 2 SDAAARAKESAKDIVNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXX 181 ++AA R +ESAK+IV VK ID+K NDLRL+ASYLR+D+NTVI Sbjct: 127 TEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRYDLNTVISSKPKEQKQSLK 186
Query: 182 PL-VDKLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLAKLG 313 KLF +I+NLDYAA+ KS P A KYY+ VS+LNDVL+K+G Sbjct: 187 ESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLSKIG 231
>sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer protein 3, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBQ PE=2 SV=1 Length = 199
Score = 43.9 bits (102), Expect = 0.001 Identities = 29/97 (29%), Positives = 42/97 (43%), Gaps = 1/97 (1%) Frame = +2
Query: 17 RAKESAKDI-VNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVD 193 R KES I ++ I K W + LR + LRFD+NT+ L Sbjct: 100 RVKESEARIDADLDVFIQKSYWTEAREQLRRQVGTLRFDLNTLASTKEKEAKKAALGLRK 159
Query: 194 KLFDEINNLDYAARSKSVPNANKYYSTTVSSLNDVLA 304 + + +LD+A R K +A K T + L+ VLA Sbjct: 160 EFIQAVEDLDFALREKDQASAAKKLEITKAKLDSVLA 196
>sp|Q41643|PSBQ_VOLCA Oxygen-evolving enhancer protein 3, chloroplastic OS=Volvox carteri GN=PSBQ PE=2 SV=1 Length = 202
Score = 41.2 bits (95), Expect = 0.006 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 2/98 (2%) Frame = +2
Query: 17 RAKESAKDI-VNVKALIDKKAWPYVQNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVD 193 R KES I +++ I K W + LR + LRFD+NT+ + Sbjct: 102 RVKESETRIDADLEGFIKKNYWTEAREQLRRQVGTLRFDLNTLASAKGVKAEKKKALELK 161
Query: 194 KLF-DEINNLDYAARSKSVPNANKYYSTTVSSLNDVLA 304 K F ++ +LD+A R K +A K S+L+ VLA Sbjct: 162 KEFIQKVEDLDFALREKDETSALKKLEAAKSALDSVLA 199
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8CF48 |
Definition |
tr|A8CF48|A8CF48_BRACM Oxygen-evolving enhancer protein 3-2 OS=Brassica campestris |
Align length |
104 |
Score (bit) |
144.0 |
E-value |
5.0e-33 |
Report |
|