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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK955258
Clone id TST39A01NGRL0022_J20
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0022_J20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCTTGTACCAGCGAAAGCGTCGTCCTGCTTAGCACATTCTTGCAAAAATGACTTGATTT
TAGCTTACTAACACCGGCAGAAAGCTAGTTCTGCGTCAGCTTGTTCCTCACATTCTTTCT
AATGTCGGCGCCAATAAGTCCGGGCTGTCTATCCTCTAGGTACAATCACCCAATACAGCA
AAATAACAATGTTTGCATTACTTGGATTTGGTGAATCAAGCCACATCCATTTTGCTACCA
AAGCAAGCTTTCGACACAGATATCAGAATTGTATATAATTGCAGCTATCATCATCCCTTA
CATGGTGGGGCTTGAGGAAGCGCCGAACAATTAGGAGTGGAACGGCAAAGCTCTCGTACA
TATGGCTTGTTAAGCAAGGGAGCTGGAATAGACCACATATTTGAAGTGTACAAAAGTTTG
GAATGCGTTGTTTTTTGGTTAGCTTGGGAGTGGCCTCTCTCACTCCTAACATCAG
■■Homology search results ■■ -
sp_hit_id Q5TZ18
Definition sp|Q5TZ18|NAV3_DANRE Neuron navigator 3 OS=Danio rerio
Align length 49
Score (bit) 30.8
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955258|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_J20, 5'
         (475 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5TZ18|NAV3_DANRE Neuron navigator 3 OS=Danio rerio GN=nav3 P...    31   3.2  
sp|Q5VWK5|IL23R_HUMAN Interleukin-23 receptor OS=Homo sapiens GN...    30   5.5  
sp|Q8SPQ7|FMO3_MACMU Dimethylaniline monooxygenase [N-oxide-form...    30   5.5  
sp|Q7YS44|FMO3_PANTR Dimethylaniline monooxygenase [N-oxide-form...    30   7.2  
sp|P31513|FMO3_HUMAN Dimethylaniline monooxygenase [N-oxide-form...    30   7.2  

>sp|Q5TZ18|NAV3_DANRE Neuron navigator 3 OS=Danio rerio GN=nav3 PE=2
            SV=1
          Length = 2269

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -3

Query: 467  RSERGHSQANQKTTHS-----KLLYTSNMWSIPAPLLNKPYVRELCRST 336
            + +  H +  + T  S     KLL+ S   S P PLL+ P   ELC  T
Sbjct: 1652 KPQSSHDEIEEMTDSSLPSSPKLLHISRQASSPQPLLSSPSTTELCECT 1700


>sp|Q5VWK5|IL23R_HUMAN Interleukin-23 receptor OS=Homo sapiens
           GN=IL23R PE=1 SV=2
          Length = 629

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 253 RKLALVAKWMWLDSPNPSNANIVILL 176
           R L L+ KW++ D PN  N+N+V +L
Sbjct: 387 RILLLIPKWLYEDIPNMKNSNVVKML 412


>sp|Q8SPQ7|FMO3_MACMU Dimethylaniline monooxygenase
           [N-oxide-forming] 3 OS=Macaca mulatta GN=FMO3 PE=2 SV=3
          Length = 532

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 466 GVREATPKLTKKQRIPNFCTLQICGLFQLPCLTSHMYESFAVPLLIVRRFL 314
           G R A   LT+  R       ++ G  Q PC   H  + FA+P+L++  FL
Sbjct: 481 GARNAI--LTQWDRSLKPLQTRVVGRLQKPCFFFHWLKPFAIPILLIAVFL 529


>sp|Q7YS44|FMO3_PANTR Dimethylaniline monooxygenase
           [N-oxide-forming] 3 OS=Pan troglodytes GN=FMO3 PE=3 SV=3
          Length = 532

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 466 GVREATPKLTKKQRIPNFCTLQICGLFQLPCLTSHMYESFAVPLLIVRRFL 314
           G R A   LT+  R       ++ G  Q PC   H  + FA+P+L++  FL
Sbjct: 481 GARNAI--LTQWDRSLKPMQTRVVGRLQKPCFFFHWLKLFAIPILLIAVFL 529


>sp|P31513|FMO3_HUMAN Dimethylaniline monooxygenase
           [N-oxide-forming] 3 OS=Homo sapiens GN=FMO3 PE=1 SV=5
          Length = 532

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -1

Query: 466 GVREATPKLTKKQRIPNFCTLQICGLFQLPCLTSHMYESFAVPLLIVRRFL 314
           G R A   LT+  R       ++ G  Q PC   H  + FA+P+L++  FL
Sbjct: 481 GARNAI--LTQWDRSLKPMQTRVVGRLQKPCFFFHWLKLFAIPILLIAVFL 529
tr_hit_id A5IDN9
Definition tr|A5IDN9|A5IDN9_LEGPC Polyhydroxyalkanoic synthase OS=Legionella pneumophila (strain Corby)
Align length 83
Score (bit) 32.7
E-value 9.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK955258|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0022_J20, 5'
         (475 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5IDN9|A5IDN9_LEGPC Polyhydroxyalkanoic synthase OS=Legionell...    33   9.2  

>tr|A5IDN9|A5IDN9_LEGPC Polyhydroxyalkanoic synthase OS=Legionella
           pneumophila (strain Corby) GN=LPC_1543 PE=4 SV=1
          Length = 597

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
 Frame = +2

Query: 5   CTSESVVLLSTFLQK*LDFSLLTPAES*FCVSLFLTFFLM--------SAPISPGCLSSR 160
           C+ E ++  S  LQ+ +DFS   P ES    S F  F  +        +A ISP  + S 
Sbjct: 9   CSKERILTQSQELQEGVDFSCCVPVESTSSNSFFSFFTRLTQANLAKWTAGISPAAIGSS 68

Query: 161 YNHPIQQNNNVCITWIW*IKPHP 229
           Y+           TW+W +   P
Sbjct: 69  YS-----------TWLWQLAQSP 80